Wall clock time and date at job start Tue Mar 31 2020 23:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34665 * 125.80618 * 2 1 4 4 H 0.97002 * 124.84732 * 0.02562 * 3 2 1 5 5 C 1.36438 * 110.29895 * 180.29780 * 3 2 1 6 6 C 1.34486 * 108.86154 * 359.72877 * 5 3 2 7 7 C 1.36778 * 125.80253 * 179.83333 * 2 1 3 8 8 C 1.47266 * 126.93947 * 359.97438 * 7 2 1 9 9 O 1.21627 * 119.99743 * 359.71911 * 8 7 2 10 10 N 1.34773 * 119.99819 * 179.71261 * 8 7 2 11 11 C 1.46496 * 119.99909 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47459 * 35.00135 * 11 10 8 13 13 C 1.53006 * 109.46995 * 275.00159 * 11 10 8 14 14 C 1.52997 * 109.47194 * 155.00140 * 11 10 8 15 15 N 1.46495 * 109.46909 * 304.99599 * 14 11 10 16 16 C 1.46502 * 120.00163 * 269.99690 * 15 14 11 17 17 C 1.34774 * 120.00242 * 90.00555 * 15 14 11 18 18 O 1.21286 * 119.99601 * 359.97438 * 17 15 14 19 19 C 1.50697 * 120.00803 * 179.97438 * 17 15 14 20 20 S 1.80998 * 109.47579 * 179.97438 * 19 17 15 21 21 C 1.76204 * 99.99925 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00063 * 359.97438 * 21 20 19 23 23 C 1.38799 * 119.99619 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00456 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99619 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46961 * 90.00402 * 25 23 21 27 27 H 1.48502 * 109.47191 * 209.99706 * 25 23 21 28 28 H 1.48497 * 109.47511 * 330.00342 * 25 23 21 29 29 H 1.09001 * 109.47000 * 270.16891 * 1 2 3 30 30 H 1.09000 * 109.46591 * 30.16864 * 1 2 3 31 31 H 1.09000 * 109.46818 * 150.16685 * 1 2 3 32 32 H 1.08005 * 125.57245 * 179.74525 * 5 3 2 33 33 H 1.07999 * 126.83820 * 179.97438 * 6 5 3 34 34 H 0.97003 * 120.00265 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.47002 * 299.99701 * 13 11 10 36 36 H 1.08993 * 109.46955 * 60.00138 * 13 11 10 37 37 H 1.09000 * 109.47050 * 179.97438 * 13 11 10 38 38 H 1.08994 * 109.47510 * 64.99985 * 14 11 10 39 39 H 1.09001 * 109.47096 * 184.99848 * 14 11 10 40 40 H 1.09006 * 109.46878 * 90.00324 * 16 15 14 41 41 H 1.09000 * 109.47249 * 209.99908 * 16 15 14 42 42 H 1.08998 * 109.47277 * 330.00800 * 16 15 14 43 43 H 1.09005 * 109.46648 * 300.00169 * 19 17 15 44 44 H 1.09005 * 109.46985 * 59.98988 * 19 17 15 45 45 H 0.96996 * 120.00528 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0074 0.0004 5 6 3.6095 0.7274 -0.0067 6 6 3.6883 -0.6152 -0.0050 7 6 2.3071 -1.1093 0.0032 8 6 1.8702 -2.5157 0.0078 9 8 0.6839 -2.7839 0.0143 10 7 2.7850 -3.5055 0.0048 11 6 2.3504 -4.9045 0.0088 12 1 1.4358 -5.0026 -0.5761 13 6 2.0859 -5.3522 1.4478 14 6 3.4446 -5.7802 -0.6048 15 7 3.7818 -5.2772 -1.9388 16 6 3.0638 -5.7778 -3.1136 17 6 4.7527 -4.3540 -2.0853 18 8 5.3469 -3.9393 -1.1127 19 6 5.1000 -3.8369 -3.4575 20 16 6.4310 -2.6176 -3.3238 21 6 6.6295 -2.1938 -5.0226 22 1 6.0108 -2.6644 -5.7724 23 6 7.5818 -1.2561 -5.3971 24 7 8.3361 -0.6829 -4.4834 25 14 7.7927 -0.8074 -7.1981 26 1 6.9004 0.3316 -7.5323 27 1 9.2042 -0.4206 -7.4499 28 1 7.4412 -1.9762 -8.0440 29 1 -0.3633 0.0030 1.0277 30 1 -0.3632 0.8885 -0.5165 31 1 -0.3633 -0.8915 -0.5112 32 1 4.4498 1.4059 -0.0120 33 1 4.5890 -1.2110 -0.0095 34 1 3.7311 -3.2915 -0.0001 35 1 3.0005 -5.2542 2.0327 36 1 1.3064 -4.7283 1.8849 37 1 1.7621 -6.3930 1.4508 38 1 4.3309 -5.7518 0.0290 39 1 3.0869 -6.8068 -0.6834 40 1 2.1897 -5.1532 -3.2985 41 1 3.7220 -5.7478 -3.9818 42 1 2.7451 -6.8046 -2.9344 43 1 5.4274 -4.6653 -4.0858 44 1 4.2219 -3.3686 -3.9023 45 1 9.0013 -0.0273 -4.7451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280980703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:49 Heat of formation + Delta-G solvation = -32.626382 kcal Electronic energy + Delta-G solvation = -27845.777225 eV Core-core repulsion = 23990.205524 eV Total energy + Delta-G solvation = -3855.571701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.04370 -39.89623 -38.59563 -36.02994 -34.50538 -32.43439 -31.76521 -31.38160 -30.22490 -29.36619 -27.23648 -26.22093 -25.65541 -25.17724 -23.07950 -20.98859 -20.25740 -19.57085 -19.06288 -17.66835 -17.49744 -16.67757 -16.31280 -15.95404 -15.61668 -14.94001 -14.89920 -14.80885 -14.15979 -13.95662 -13.78812 -13.40486 -13.25810 -13.13608 -12.92937 -12.84404 -12.68283 -12.55517 -12.48789 -12.47777 -12.29171 -12.16830 -11.81265 -11.66808 -11.40107 -11.10266 -11.07422 -11.02153 -10.76525 -9.81128 -9.56771 -9.41252 -9.07020 -8.89681 -8.59330 -8.47061 -8.23649 -7.97205 -6.48881 -6.22622 -3.91818 1.94654 2.70557 2.90174 3.00094 3.21189 3.22475 3.26211 3.29499 3.58713 3.74013 3.86227 4.19850 4.78729 4.83737 4.93673 5.09107 5.12964 5.15494 5.21081 5.26568 5.30608 5.35951 5.45457 5.47919 5.58689 5.59329 5.66342 5.73453 5.74354 5.75591 5.91115 5.99185 6.04103 6.14519 6.16156 6.18058 6.44476 6.56344 6.85962 6.99043 7.13941 7.49179 7.59203 7.59291 7.97788 8.34599 8.49814 8.67414 9.23348 10.84687 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.004095 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.194471 B = 6836.450708 C = 8791.541125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.097 3.903 3 N -0.554 5.554 4 H 0.413 0.587 5 C -0.018 4.018 6 C -0.151 4.151 7 C -0.239 4.239 8 C 0.595 3.405 9 O -0.566 6.566 10 N -0.717 5.717 11 C 0.128 3.872 12 H 0.085 0.915 13 C -0.160 4.160 14 C 0.107 3.893 15 N -0.621 5.621 16 C 0.080 3.920 17 C 0.541 3.459 18 O -0.522 6.522 19 C -0.152 4.152 20 S -0.055 6.055 21 C -0.534 4.534 22 H 0.071 0.929 23 C 0.075 3.925 24 N -0.868 5.868 25 Si 0.916 3.084 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.171 0.829 33 H 0.151 0.849 34 H 0.413 0.587 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.114 -4.534 9.148 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 N -0.150 5.150 4 H 0.249 0.751 5 C -0.144 4.144 6 C -0.175 4.175 7 C -0.249 4.249 8 C 0.385 3.615 9 O -0.448 6.448 10 N -0.373 5.373 11 C 0.021 3.979 12 H 0.103 0.897 13 C -0.219 4.219 14 C -0.017 4.017 15 N -0.356 5.356 16 C -0.064 4.064 17 C 0.330 3.670 18 O -0.398 6.398 19 C -0.302 4.302 20 S 0.172 5.828 21 C -0.683 4.683 22 H 0.089 0.911 23 C -0.134 4.134 24 N -0.503 5.503 25 Si 0.742 3.258 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.188 0.812 33 H 0.169 0.831 34 H 0.254 0.746 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.880 -3.891 10.607 17.897 hybrid contribution -0.128 0.354 -2.472 2.501 sum -14.008 -3.538 8.134 16.580 Atomic orbital electron populations 1.20513 0.87373 1.03927 1.02979 1.20246 0.93427 0.85834 1.02586 1.41572 1.06398 1.08113 1.58919 0.75131 1.21770 0.85336 0.96718 1.10598 1.22224 0.95985 0.93807 1.05446 1.20115 0.93516 0.91887 1.19391 1.17368 0.85093 0.84328 0.74744 1.90661 1.16815 1.84708 1.52601 1.46104 1.11311 1.04850 1.75000 1.21322 0.98277 0.81593 0.96676 0.89662 1.22124 1.02363 1.01248 0.96191 1.21816 0.98811 0.96883 0.84216 1.47818 1.37684 1.42918 1.07143 1.21798 0.97143 0.99149 0.88266 1.20309 0.77795 0.77598 0.91320 1.90584 1.51224 1.57141 1.40810 1.23562 1.06057 1.04655 0.95935 1.85256 1.39585 1.46590 1.11389 1.22865 1.24241 1.28599 0.92555 0.91070 1.24948 0.94775 0.95140 0.98529 1.70004 1.20890 1.26313 1.33089 0.86214 0.77583 0.78837 0.83158 1.20326 1.20761 1.19697 0.90868 0.92146 0.88247 0.81214 0.83109 0.74648 0.92226 0.91790 0.91811 0.89198 0.89301 0.92718 0.90611 0.91242 0.89356 0.89357 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.88 36.01 0.36 -0.68 16 2 C 0.10 1.36 7.18 -81.88 -0.59 0.77 16 3 N -0.55 -6.56 5.90 -9.10 -0.05 -6.61 16 4 H 0.41 3.32 8.96 -40.82 -0.37 2.96 16 5 C -0.02 -0.24 11.89 -16.83 -0.20 -0.44 16 6 C -0.15 -2.47 10.56 -37.50 -0.40 -2.87 16 7 C -0.24 -3.94 6.29 -103.35 -0.65 -4.59 16 8 C 0.59 10.14 7.77 -12.59 -0.10 10.04 16 9 O -0.57 -10.27 14.48 5.25 0.08 -10.20 16 10 N -0.72 -11.14 4.48 -54.93 -0.25 -11.38 16 11 C 0.13 1.61 2.88 -67.93 -0.20 1.42 16 12 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 13 C -0.16 -1.71 9.48 37.16 0.35 -1.36 16 14 C 0.11 1.23 5.19 -4.05 -0.02 1.20 16 15 N -0.62 -8.49 2.77 -181.58 -0.50 -9.00 16 16 C 0.08 0.85 10.29 59.85 0.62 1.47 16 17 C 0.54 9.74 6.99 -10.99 -0.08 9.66 16 18 O -0.52 -10.62 13.18 5.55 0.07 -10.54 16 19 C -0.15 -3.03 4.71 36.00 0.17 -2.86 16 20 S -0.05 -1.44 20.57 -107.50 -2.21 -3.65 16 21 C -0.53 -14.98 9.50 30.94 0.29 -14.68 16 22 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 23 C 0.08 2.11 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -25.57 13.22 55.49 0.73 -24.84 16 25 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 1.33 6.47 -51.93 -0.34 1.00 16 32 H 0.17 1.93 8.06 -52.48 -0.42 1.51 16 33 H 0.15 2.64 7.70 -52.49 -0.40 2.23 16 34 H 0.41 6.96 4.95 -40.82 -0.20 6.76 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 1.13 7.42 -51.93 -0.39 0.74 16 39 H 0.09 0.73 7.89 -51.93 -0.41 0.32 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.81 6.44 -51.93 -0.33 0.48 16 42 H 0.07 0.54 7.89 -51.93 -0.41 0.13 16 43 H 0.09 1.65 7.40 -51.91 -0.38 1.26 16 44 H 0.09 1.72 8.11 -51.91 -0.42 1.30 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 387.39 15.07 5.84 5.84 Total: -1.00 -35.16 387.39 -8.40 -43.56 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -6.55 Total: 11.56 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -0.53 Total: -0.91 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.07 Total: -51.83 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: 0.15 Total: -20.74 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.21 Total: -3.65 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.16 -8.40 -43.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280980703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.934 kcal (2) G-P(sol) polarization free energy of solvation -35.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds