Wall clock time and date at job start Tue Mar 31 2020 23:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33819 * 124.52188 * 2 1 4 4 C 1.37465 * 115.10096 * 179.70695 * 3 2 1 5 5 C 1.36650 * 113.29832 * 0.49246 * 4 3 2 6 6 C 1.46580 * 125.45811 * 179.80215 * 5 4 3 7 7 O 1.21701 * 120.00014 * 359.72024 * 6 5 4 8 8 N 1.34778 * 119.99823 * 179.71993 * 6 5 4 9 9 C 1.46499 * 119.99679 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.46886 * 180.02562 * 9 8 6 11 11 O 1.21281 * 120.00050 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00110 * 179.97438 * 10 9 8 13 13 C 1.46507 * 120.00020 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.47109 * 325.00326 * 13 12 10 15 15 C 1.53006 * 109.46661 * 85.00514 * 13 12 10 16 16 C 1.52997 * 109.46993 * 204.99906 * 13 12 10 17 17 H 1.09005 * 109.47159 * 300.00253 * 16 13 12 18 18 C 1.52999 * 109.47264 * 60.00253 * 16 13 12 19 19 N 1.46498 * 109.47167 * 180.02562 * 16 13 12 20 20 C 1.36935 * 120.00239 * 154.99975 * 19 16 13 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 S 1.70617 * 124.52643 * 179.97438 * 2 1 3 29 29 H 1.09008 * 109.47214 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47226 * 299.99744 * 1 2 3 31 31 H 1.09000 * 109.47666 * 60.00093 * 1 2 3 32 32 H 1.08002 * 122.44962 * 359.95400 * 3 2 1 33 33 H 1.08005 * 123.35125 * 180.29576 * 4 3 2 34 34 H 0.96995 * 120.00114 * 359.97438 * 8 6 5 35 35 H 1.08996 * 109.47786 * 60.00245 * 9 8 6 36 36 H 1.09001 * 109.47119 * 299.99685 * 9 8 6 37 37 H 0.97004 * 120.00037 * 359.97438 * 12 10 9 38 38 H 1.09004 * 109.46812 * 299.99473 * 15 13 12 39 39 H 1.08993 * 109.47512 * 60.00060 * 15 13 12 40 40 H 1.09003 * 109.46879 * 180.02562 * 15 13 12 41 41 H 1.08994 * 109.47214 * 179.97438 * 18 16 13 42 42 H 1.08994 * 109.47102 * 299.99987 * 18 16 13 43 43 H 1.09005 * 109.47033 * 59.99923 * 18 16 13 44 44 H 0.97004 * 119.99747 * 335.00715 * 19 16 13 45 45 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6214 0.8775 0.0064 5 6 3.9492 -0.4490 0.0008 6 6 5.3123 -0.9881 0.0013 7 8 6.2658 -0.2319 0.0019 8 7 5.5096 -2.3214 0.0012 9 6 6.8719 -2.8602 0.0023 10 6 6.8165 -4.3662 0.0012 11 8 5.7446 -4.9335 0.0001 12 7 7.9581 -5.0826 0.0014 13 6 7.9041 -6.5466 0.0009 14 1 7.0493 -6.8789 0.5898 15 6 7.7604 -7.0511 -1.4365 16 6 9.1916 -7.1046 0.6108 17 1 10.0465 -6.7722 0.0218 18 6 9.3354 -6.6001 2.0480 19 7 9.1379 -8.5686 0.6098 20 6 10.2979 -9.2963 0.6099 21 1 11.2524 -8.7909 0.6112 22 6 10.2472 -10.6834 0.6084 23 7 9.0839 -11.2993 0.6123 24 14 11.8296 -11.6761 0.6092 25 1 11.5049 -13.1252 0.6141 26 1 12.6193 -11.3498 -0.6054 27 1 12.6225 -11.3424 1.8196 28 16 2.4740 -1.4057 0.0006 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8428 2.0965 -0.0007 33 1 4.3549 1.6704 0.0118 34 1 4.7497 -2.9241 0.0010 35 1 7.3980 -2.5163 0.8928 36 1 7.3996 -2.5158 -0.8872 37 1 8.8154 -4.6288 0.0019 38 1 6.8432 -6.6536 -1.8710 39 1 8.6152 -6.7188 -2.0254 40 1 7.7198 -8.1404 -1.4368 41 1 10.2524 -6.9979 2.4827 42 1 9.3755 -5.5109 2.0484 43 1 8.4806 -6.9324 2.6370 44 1 8.2807 -9.0225 0.6089 45 1 8.2622 -10.7839 0.6122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282228427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:35 Heat of formation + Delta-G solvation = -36.047057 kcal Electronic energy + Delta-G solvation = -26025.828980 eV Core-core repulsion = 22170.108948 eV Total energy + Delta-G solvation = -3855.720032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.46149 -39.55516 -38.11196 -37.01911 -34.74900 -34.25584 -32.55295 -32.01457 -30.05931 -28.76643 -28.18290 -26.74304 -24.01056 -23.87284 -22.92998 -21.70448 -20.68000 -20.30883 -19.70567 -18.48176 -17.60626 -17.04530 -16.61349 -16.18592 -16.03108 -15.64255 -15.14640 -14.88174 -14.62313 -14.35946 -14.11963 -13.76767 -13.65307 -13.54262 -13.34666 -13.30244 -12.95734 -12.80746 -12.67710 -12.38591 -12.25222 -12.01672 -11.80351 -11.34385 -11.30695 -11.02244 -10.72752 -10.60457 -10.47147 -10.15869 -10.08492 -9.97276 -9.58967 -9.27246 -9.12210 -9.04559 -8.99401 -8.89603 -7.11309 -6.14249 -3.15731 0.09569 1.04230 1.45969 1.97573 2.44689 2.52770 2.87147 3.25333 3.49350 3.52373 3.70036 4.28695 4.40295 4.57474 4.64976 4.69870 4.89743 4.99372 5.02481 5.06737 5.13480 5.14729 5.40786 5.42521 5.47453 5.57206 5.64771 5.70238 5.73571 5.87685 5.94983 5.96309 6.03170 6.21692 6.26385 6.34731 6.44624 6.64975 6.75229 6.88878 7.08272 7.41093 7.74948 7.78240 8.06548 8.70477 9.15443 10.01833 10.15744 11.33609 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029462 B = 0.001799 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.147829 B =15556.387230 C =16145.441393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.194 4.194 3 C -0.160 4.160 4 C -0.047 4.047 5 C -0.275 4.275 6 C 0.595 3.405 7 O -0.531 6.531 8 N -0.714 5.714 9 C 0.100 3.900 10 C 0.507 3.493 11 O -0.540 6.540 12 N -0.709 5.709 13 C 0.135 3.865 14 H 0.085 0.915 15 C -0.152 4.152 16 C 0.174 3.826 17 H 0.053 0.947 18 C -0.164 4.164 19 N -0.729 5.729 20 C -0.332 4.332 21 H 0.065 0.935 22 C -0.043 4.043 23 N -0.941 5.941 24 Si 1.080 2.920 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.295 1.295 28 S 0.213 5.787 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.410 0.590 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.402 0.598 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.037 0.963 43 H 0.045 0.955 44 H 0.368 0.632 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.417 25.449 -2.066 29.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.314 4.314 3 C -0.191 4.191 4 C -0.080 4.080 5 C -0.395 4.395 6 C 0.382 3.618 7 O -0.410 6.410 8 N -0.369 5.369 9 C -0.027 4.027 10 C 0.292 3.708 11 O -0.418 6.418 12 N -0.360 5.360 13 C 0.030 3.970 14 H 0.103 0.897 15 C -0.210 4.210 16 C 0.063 3.937 17 H 0.071 0.929 18 C -0.225 4.225 19 N -0.372 5.372 20 C -0.462 4.462 21 H 0.083 0.917 22 C -0.241 4.241 23 N -0.586 5.586 24 Si 0.911 3.089 25 H -0.210 1.210 26 H -0.223 1.223 27 H -0.223 1.223 28 S 0.481 5.519 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.163 0.837 33 H 0.171 0.829 34 H 0.248 0.752 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.236 0.764 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.202 0.798 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.948 22.486 -2.072 26.542 hybrid contribution -0.445 3.003 0.079 3.037 sum -14.394 25.489 -1.993 29.340 Atomic orbital electron populations 1.20415 0.87271 1.03375 1.03473 1.24338 1.01733 0.97919 1.07362 1.19942 0.92582 0.99715 1.06856 1.20745 0.96224 0.95037 0.95998 1.24461 0.96702 0.98227 1.20128 1.16873 0.87063 0.81684 0.76225 1.90839 1.41797 1.58009 1.50332 1.45546 1.09022 1.06681 1.75666 1.21118 0.85144 0.91196 1.05245 1.20376 0.84780 0.89078 0.76540 1.90703 1.28923 1.72021 1.50115 1.45965 1.08190 1.07925 1.73899 1.21411 1.00669 0.77296 0.97622 0.89663 1.22044 1.00757 1.02829 0.95402 1.20331 0.93586 0.86079 0.93697 0.92920 1.22438 1.02025 0.98249 0.99740 1.42286 1.06017 0.98988 1.89921 1.19984 0.86118 0.91323 1.48818 0.91705 1.25769 1.04236 0.93780 1.00313 1.70886 0.97138 1.37395 1.53206 0.83244 0.73544 0.76329 0.75831 1.21040 1.22266 1.22286 1.83287 0.94021 1.07093 1.67518 0.91107 0.90095 0.90101 0.83726 0.82874 0.75176 0.87941 0.87968 0.76371 0.93290 0.92813 0.90404 0.92481 0.94400 0.93552 0.79819 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 10.33 36.00 0.37 -0.01 16 2 C -0.19 -1.35 6.28 -35.86 -0.23 -1.58 16 3 C -0.16 -1.15 9.99 -41.41 -0.41 -1.56 16 4 C -0.05 -0.42 10.01 -40.44 -0.40 -0.82 16 5 C -0.27 -2.80 6.45 -36.79 -0.24 -3.04 16 6 C 0.60 7.17 7.78 -12.90 -0.10 7.07 16 7 O -0.53 -7.73 16.84 5.19 0.09 -7.64 16 8 N -0.71 -7.98 5.52 -62.83 -0.35 -8.33 16 9 C 0.10 1.03 6.15 -5.19 -0.03 1.00 16 10 C 0.51 6.43 7.86 -10.99 -0.09 6.35 16 11 O -0.54 -8.63 15.33 5.56 0.09 -8.55 16 12 N -0.71 -8.74 4.38 -53.80 -0.24 -8.97 16 13 C 0.13 2.15 2.21 -67.92 -0.15 2.00 16 14 H 0.09 1.54 7.58 -51.93 -0.39 1.14 16 15 C -0.15 -2.49 9.33 37.16 0.35 -2.15 16 16 C 0.17 3.20 2.52 -67.93 -0.17 3.03 16 17 H 0.05 0.97 8.08 -51.93 -0.42 0.56 16 18 C -0.16 -2.82 9.34 37.16 0.35 -2.47 16 19 N -0.73 -17.23 4.43 -53.43 -0.24 -17.47 16 20 C -0.33 -8.93 9.93 -15.06 -0.15 -9.08 16 21 H 0.06 1.72 7.83 -52.48 -0.41 1.31 16 22 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 23 N -0.94 -28.50 13.70 55.49 0.76 -27.74 16 24 Si 1.08 25.38 29.92 -169.99 -5.09 20.29 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.30 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.30 -6.66 7.11 56.52 0.40 -6.25 16 28 S 0.21 1.74 22.08 -107.50 -2.37 -0.64 16 29 H 0.07 0.28 8.11 -51.92 -0.42 -0.15 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 33 H 0.15 1.27 8.06 -52.48 -0.42 0.84 16 34 H 0.41 4.56 6.55 -40.82 -0.27 4.29 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.40 3.89 8.39 -40.82 -0.34 3.54 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.46 7.44 -51.93 -0.39 1.07 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.04 0.52 7.44 -51.93 -0.39 0.13 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.37 9.14 6.41 -40.82 -0.26 8.87 16 45 H 0.26 7.62 6.77 -40.82 -0.28 7.34 16 LS Contribution 393.07 15.07 5.92 5.92 Total: -1.00 -33.81 393.07 -9.01 -42.82 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -6.59 Total: 12.86 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.00 Total: -2.57 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -0.06 Total: -62.50 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.17 Total: -16.18 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.09 Total: 20.29 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.37 Total: -0.64 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.81 -9.01 -42.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282228427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.775 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds