Wall clock time and date at job start Tue Mar 31 2020 23:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33819 * 124.52188 * 2 1 4 4 C 1.37465 * 115.10096 * 179.70695 * 3 2 1 5 5 C 1.36650 * 113.29832 * 0.49246 * 4 3 2 6 6 C 1.46580 * 125.45811 * 179.80215 * 5 4 3 7 7 O 1.21701 * 120.00014 * 359.72024 * 6 5 4 8 8 N 1.34778 * 119.99823 * 179.71993 * 6 5 4 9 9 C 1.46499 * 119.99679 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.46886 * 180.02562 * 9 8 6 11 11 O 1.21281 * 120.00050 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00110 * 179.97438 * 10 9 8 13 13 C 1.46507 * 120.00020 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.47109 * 325.00326 * 13 12 10 15 15 C 1.53006 * 109.46661 * 85.00514 * 13 12 10 16 16 C 1.52997 * 109.46993 * 204.99906 * 13 12 10 17 17 H 1.09005 * 109.47159 * 300.00253 * 16 13 12 18 18 C 1.52999 * 109.47264 * 60.00253 * 16 13 12 19 19 N 1.46498 * 109.47167 * 180.02562 * 16 13 12 20 20 C 1.36935 * 120.00239 * 154.99975 * 19 16 13 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 S 1.70617 * 124.52643 * 179.97438 * 2 1 3 29 29 H 1.09008 * 109.47214 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47226 * 299.99744 * 1 2 3 31 31 H 1.09000 * 109.47666 * 60.00093 * 1 2 3 32 32 H 1.08002 * 122.44962 * 359.95400 * 3 2 1 33 33 H 1.08005 * 123.35125 * 180.29576 * 4 3 2 34 34 H 0.96995 * 120.00114 * 359.97438 * 8 6 5 35 35 H 1.08996 * 109.47786 * 60.00245 * 9 8 6 36 36 H 1.09001 * 109.47119 * 299.99685 * 9 8 6 37 37 H 0.97004 * 120.00037 * 359.97438 * 12 10 9 38 38 H 1.09004 * 109.46812 * 299.99473 * 15 13 12 39 39 H 1.08993 * 109.47512 * 60.00060 * 15 13 12 40 40 H 1.09003 * 109.46879 * 180.02562 * 15 13 12 41 41 H 1.08994 * 109.47214 * 179.97438 * 18 16 13 42 42 H 1.08994 * 109.47102 * 299.99987 * 18 16 13 43 43 H 1.09005 * 109.47033 * 59.99923 * 18 16 13 44 44 H 0.97004 * 119.99747 * 335.00715 * 19 16 13 45 45 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6214 0.8775 0.0064 5 6 3.9492 -0.4490 0.0008 6 6 5.3123 -0.9881 0.0013 7 8 6.2658 -0.2319 0.0019 8 7 5.5096 -2.3214 0.0012 9 6 6.8719 -2.8602 0.0023 10 6 6.8165 -4.3662 0.0012 11 8 5.7446 -4.9335 0.0001 12 7 7.9581 -5.0826 0.0014 13 6 7.9041 -6.5466 0.0009 14 1 7.0493 -6.8789 0.5898 15 6 7.7604 -7.0511 -1.4365 16 6 9.1916 -7.1046 0.6108 17 1 10.0465 -6.7722 0.0218 18 6 9.3354 -6.6001 2.0480 19 7 9.1379 -8.5686 0.6098 20 6 10.2979 -9.2963 0.6099 21 1 11.2524 -8.7909 0.6112 22 6 10.2472 -10.6834 0.6084 23 7 9.0839 -11.2993 0.6123 24 14 11.8296 -11.6761 0.6092 25 1 11.5049 -13.1252 0.6141 26 1 12.6193 -11.3498 -0.6054 27 1 12.6225 -11.3424 1.8196 28 16 2.4740 -1.4057 0.0006 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8428 2.0965 -0.0007 33 1 4.3549 1.6704 0.0118 34 1 4.7497 -2.9241 0.0010 35 1 7.3980 -2.5163 0.8928 36 1 7.3996 -2.5158 -0.8872 37 1 8.8154 -4.6288 0.0019 38 1 6.8432 -6.6536 -1.8710 39 1 8.6152 -6.7188 -2.0254 40 1 7.7198 -8.1404 -1.4368 41 1 10.2524 -6.9979 2.4827 42 1 9.3755 -5.5109 2.0484 43 1 8.4806 -6.9324 2.6370 44 1 8.2807 -9.0225 0.6089 45 1 8.2622 -10.7839 0.6122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282228427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:34 Heat of formation + Delta-G solvation = -59.666651 kcal Electronic energy + Delta-G solvation = -26026.853202 eV Core-core repulsion = 22170.108948 eV Total energy + Delta-G solvation = -3856.744255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.47397 -40.55303 -38.80059 -38.42855 -35.99523 -35.59120 -33.70944 -33.06579 -31.40852 -30.03555 -29.51931 -27.48322 -25.80684 -24.69174 -24.25633 -22.57369 -21.76485 -21.68793 -20.56207 -19.50669 -19.21883 -18.05086 -17.67365 -17.16077 -16.95307 -16.65394 -16.38147 -15.95592 -15.88828 -15.55397 -15.19848 -14.96064 -14.84917 -14.75508 -14.39451 -14.25447 -14.00682 -13.86051 -13.49804 -13.34285 -13.23744 -12.95001 -12.93093 -12.74829 -12.60170 -12.48516 -12.28512 -11.89405 -11.88212 -11.67625 -11.39750 -11.30759 -11.10943 -10.96961 -10.49154 -10.21944 -9.67255 -9.60307 -9.12022 -8.34928 -5.30029 -0.56679 0.41567 0.85278 1.31853 1.41139 1.57572 1.61225 1.69979 1.85750 2.06598 2.25994 2.74493 3.43546 3.44803 3.68209 3.73839 3.84013 3.86358 4.08710 4.24162 4.24357 4.25727 4.28896 4.36296 4.49807 4.66294 4.68347 4.72846 4.77501 4.85571 4.93099 5.01436 5.04488 5.07185 5.08577 5.15539 5.22167 5.39077 5.39767 5.43667 5.64215 6.20271 6.38393 6.52028 6.89554 7.04276 7.11063 7.99852 8.11743 9.16412 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029462 B = 0.001799 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.147829 B =15556.387230 C =16145.441393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.183 4.183 3 C -0.168 4.168 4 C -0.044 4.044 5 C -0.309 4.309 6 C 0.595 3.405 7 O -0.564 6.564 8 N -0.715 5.715 9 C 0.105 3.895 10 C 0.512 3.488 11 O -0.573 6.573 12 N -0.697 5.697 13 C 0.151 3.849 14 H 0.064 0.936 15 C -0.144 4.144 16 C 0.171 3.829 17 H 0.060 0.940 18 C -0.155 4.155 19 N -0.741 5.741 20 C -0.322 4.322 21 H 0.071 0.929 22 C -0.106 4.106 23 N -0.977 5.977 24 Si 1.126 2.874 25 H -0.298 1.298 26 H -0.277 1.277 27 H -0.279 1.279 28 S 0.211 5.789 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.170 0.830 33 H 0.155 0.845 34 H 0.410 0.590 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.419 0.581 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.040 0.960 42 H 0.077 0.923 43 H 0.032 0.968 44 H 0.358 0.642 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.418 27.798 -2.179 31.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.303 4.303 3 C -0.197 4.197 4 C -0.078 4.078 5 C -0.429 4.429 6 C 0.384 3.616 7 O -0.445 6.445 8 N -0.369 5.369 9 C -0.021 4.021 10 C 0.299 3.701 11 O -0.453 6.453 12 N -0.349 5.349 13 C 0.045 3.955 14 H 0.082 0.918 15 C -0.202 4.202 16 C 0.062 3.938 17 H 0.078 0.922 18 C -0.215 4.215 19 N -0.384 5.384 20 C -0.454 4.454 21 H 0.089 0.911 22 C -0.297 4.297 23 N -0.625 5.625 24 Si 0.951 3.049 25 H -0.224 1.224 26 H -0.203 1.203 27 H -0.205 1.205 28 S 0.479 5.521 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.187 0.813 33 H 0.172 0.828 34 H 0.248 0.752 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.257 0.743 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.051 0.949 44 H 0.190 0.810 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.923 24.906 -2.184 28.617 hybrid contribution -0.547 2.400 0.110 2.464 sum -14.470 27.307 -2.073 30.973 Atomic orbital electron populations 1.20567 0.85188 1.04168 1.04829 1.24756 1.03051 0.97120 1.05409 1.20167 0.91769 1.00986 1.06819 1.20972 0.97268 0.94670 0.94908 1.24414 0.96583 0.99103 1.22787 1.17099 0.87545 0.81531 0.75469 1.90807 1.42908 1.58594 1.52171 1.45591 1.09380 1.06575 1.75341 1.21181 0.85173 0.88852 1.06905 1.20742 0.84016 0.90002 0.75351 1.90700 1.30232 1.72871 1.51501 1.45698 1.09242 1.06207 1.73764 1.20925 0.98432 0.79393 0.96709 0.91785 1.21935 1.01472 1.00900 0.95901 1.20519 0.94982 0.83396 0.94853 0.92173 1.22296 1.00505 1.00698 0.97965 1.42468 1.04740 1.01185 1.89996 1.20322 0.87288 0.91663 1.46105 0.91114 1.27111 1.06030 0.95661 1.00924 1.70993 0.97523 1.37599 1.56433 0.82638 0.70870 0.74253 0.77093 1.22393 1.20301 1.20528 1.83278 0.93487 1.07716 1.67659 0.90665 0.88646 0.88622 0.81285 0.82764 0.75187 0.86256 0.86180 0.74348 0.92822 0.91712 0.93319 0.94125 0.90417 0.94864 0.80962 0.94629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 10.33 71.23 0.74 0.20 16 2 C -0.18 -2.20 6.28 24.68 0.15 -2.05 16 3 C -0.17 -2.08 9.99 21.08 0.21 -1.87 16 4 C -0.04 -0.75 10.01 21.72 0.22 -0.53 16 5 C -0.31 -6.17 6.45 24.08 0.16 -6.01 16 6 C 0.60 14.11 7.78 86.42 0.67 14.78 16 7 O -0.56 -16.16 16.84 -4.35 -0.07 -16.23 16 8 N -0.71 -15.42 5.52 -470.91 -2.60 -18.02 16 9 C 0.11 1.97 6.15 85.63 0.53 2.50 16 10 C 0.51 12.22 7.86 87.66 0.69 12.91 16 11 O -0.57 -18.03 15.33 -3.03 -0.05 -18.08 16 12 N -0.70 -15.79 4.38 -442.52 -1.94 -17.73 16 13 C 0.15 4.74 2.21 44.99 0.10 4.84 16 14 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 15 C -0.14 -4.68 9.33 71.98 0.67 -4.01 16 16 C 0.17 6.15 2.52 44.99 0.11 6.27 16 17 H 0.06 2.10 8.08 -2.38 -0.02 2.08 16 18 C -0.15 -5.07 9.34 71.98 0.67 -4.40 16 19 N -0.74 -35.40 4.43 -322.94 -1.43 -36.83 16 20 C -0.32 -17.32 9.93 84.03 0.83 -16.48 16 21 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 22 C -0.11 -6.03 5.50 84.86 0.47 -5.57 16 23 N -0.98 -60.64 13.70 21.65 0.30 -60.34 16 24 Si 1.13 51.09 29.92 68.60 2.05 53.14 16 25 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 26 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 27 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 28 S 0.21 3.27 22.08 -56.49 -1.25 2.02 16 29 H 0.07 0.41 8.11 -2.38 -0.02 0.39 16 30 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.41 8.97 6.55 -92.71 -0.61 8.37 16 35 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.42 6.79 8.39 -92.71 -0.78 6.02 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.05 1.87 7.44 -2.39 -0.02 1.85 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.08 1.91 7.44 -2.39 -0.02 1.89 16 43 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.36 18.41 6.41 -92.71 -0.59 17.81 16 45 H 0.24 15.10 6.77 -92.71 -0.63 14.47 16 Total: -1.00 -74.20 393.07 0.43 -73.78 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: -0.80 Total: 37.71 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 6.22 Total: 0.57 kcal Atomic # 7 Polarization: -127.24 SS G_CDS: -5.67 Total: -132.91 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.12 Total: -34.31 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 2.05 Total: 53.14 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.25 Total: 2.02 kcal Total: -74.20 0.43 -73.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282228427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.109 kcal (2) G-P(sol) polarization free energy of solvation -74.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds