Wall clock time and date at job start Tue Mar 31 2020 23:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33814 * 124.52152 * 2 1 4 4 C 1.37477 * 115.09811 * 180.02562 * 3 2 1 5 5 C 1.36641 * 113.29948 * 0.02562 * 4 3 2 6 6 C 1.46585 * 125.45971 * 180.02562 * 5 4 3 7 7 O 1.21702 * 119.99829 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99848 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99807 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47274 * 179.97438 * 9 8 6 11 11 O 1.21281 * 119.99836 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99950 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99746 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47303 * 35.00169 * 13 12 10 15 15 C 1.53003 * 109.46964 * 274.99939 * 13 12 10 16 16 C 1.53007 * 109.46912 * 155.00031 * 13 12 10 17 17 H 1.08998 * 109.47023 * 59.99967 * 16 13 12 18 18 C 1.52991 * 109.47028 * 299.99535 * 16 13 12 19 19 N 1.46497 * 109.46546 * 179.97438 * 16 13 12 20 20 C 1.36937 * 119.99862 * 204.99633 * 19 16 13 21 21 H 1.08004 * 120.00093 * 0.02562 * 20 19 16 22 22 C 1.38813 * 120.00404 * 180.02562 * 20 19 16 23 23 N 1.31620 * 119.99892 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00302 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47002 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47119 * 119.99811 * 24 22 20 27 27 H 1.48501 * 109.47495 * 240.00163 * 24 22 20 28 28 S 1.70620 * 124.52019 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47225 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46903 * 299.98324 * 1 2 3 31 31 H 1.09004 * 109.47160 * 59.98089 * 1 2 3 32 32 H 1.08001 * 122.45277 * 0.03913 * 3 2 1 33 33 H 1.08006 * 123.34712 * 180.02562 * 4 3 2 34 34 H 0.96996 * 120.00545 * 359.97438 * 8 6 5 35 35 H 1.09004 * 109.47405 * 299.99702 * 9 8 6 36 36 H 1.09004 * 109.47489 * 59.99882 * 9 8 6 37 37 H 0.97003 * 120.00073 * 359.97438 * 12 10 9 38 38 H 1.09006 * 109.47004 * 300.00248 * 15 13 12 39 39 H 1.08998 * 109.46959 * 60.00101 * 15 13 12 40 40 H 1.08997 * 109.47153 * 180.02562 * 15 13 12 41 41 H 1.09003 * 109.47118 * 60.00328 * 18 16 13 42 42 H 1.08994 * 109.47472 * 180.02562 * 18 16 13 43 43 H 1.08999 * 109.47666 * 300.00639 * 18 16 13 44 44 H 0.97003 * 120.00394 * 25.00480 * 19 16 13 45 45 H 0.96998 * 120.00358 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8774 -0.0006 5 6 3.9493 -0.4491 -0.0016 6 6 5.3123 -0.9883 -0.0018 7 8 6.2659 -0.2321 -0.0016 8 7 5.5096 -2.3216 -0.0034 9 6 6.8718 -2.8605 -0.0031 10 6 6.8163 -4.3665 -0.0044 11 8 5.7444 -4.9338 -0.0050 12 7 7.9579 -5.0829 -0.0049 13 6 7.9039 -6.5469 -0.0067 14 1 7.0496 -6.8783 -0.5969 15 6 7.7590 -7.0537 1.4296 16 6 9.1919 -7.1040 -0.6166 17 1 10.0463 -6.7726 -0.0264 18 6 9.3368 -6.5972 -2.0529 19 7 9.1381 -8.5679 -0.6179 20 6 10.2980 -9.2957 -0.6183 21 1 11.2526 -8.7904 -0.6173 22 6 10.2472 -10.6829 -0.6201 23 7 9.0839 -11.2988 -0.6218 24 14 11.8295 -11.6756 -0.6200 25 1 12.9928 -10.7527 -0.6185 26 1 11.8758 -12.5331 0.5916 27 1 11.8779 -12.5302 -1.8335 28 16 2.4739 -1.4058 -0.0006 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5136 0.8902 31 1 -0.3634 0.5141 -0.8898 32 1 1.8429 2.0965 0.0006 33 1 4.3550 1.6703 -0.0002 34 1 4.7496 -2.9243 -0.0040 35 1 7.3994 -2.5152 -0.8922 36 1 7.3981 -2.5175 0.8878 37 1 8.8153 -4.6291 -0.0047 38 1 8.6134 -6.7223 2.0198 39 1 6.8415 -6.6568 1.8640 40 1 7.7192 -8.1430 1.4283 41 1 9.3769 -5.5079 -2.0515 42 1 10.2540 -6.9944 -2.4875 43 1 8.4823 -6.9285 -2.6431 44 1 8.2808 -9.0218 -0.6185 45 1 9.0483 -12.2681 -0.6226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282228430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:43 Heat of formation + Delta-G solvation = -36.597977 kcal Electronic energy + Delta-G solvation = -25981.074267 eV Core-core repulsion = 22125.330345 eV Total energy + Delta-G solvation = -3855.743922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41330 -39.50392 -38.08432 -36.89852 -34.69281 -34.04223 -32.52550 -31.88845 -30.04777 -28.71544 -28.38695 -26.71878 -24.05019 -23.94773 -22.87953 -21.65392 -20.60120 -20.18504 -19.62633 -18.44791 -17.55311 -16.90132 -16.57788 -16.11476 -15.92786 -15.59735 -15.02820 -14.84186 -14.61633 -14.33678 -14.06349 -13.68023 -13.62456 -13.49725 -13.29809 -13.13533 -12.85939 -12.78440 -12.47585 -12.36022 -12.23085 -11.90289 -11.75686 -11.28336 -11.24124 -11.01176 -10.87841 -10.74609 -10.44568 -10.22689 -10.04981 -9.91986 -9.70855 -9.55392 -9.10931 -9.02345 -8.97096 -8.86678 -7.03692 -5.81883 -3.11724 0.11931 1.06573 1.48256 1.99822 2.50817 2.57243 2.89891 3.30828 3.40116 3.46178 3.48025 4.30753 4.44201 4.55007 4.64088 4.71908 4.91858 5.01093 5.06832 5.10781 5.16680 5.23006 5.42597 5.44427 5.59238 5.61411 5.68971 5.75762 5.83095 5.91493 5.97165 6.05216 6.12423 6.31847 6.36103 6.45070 6.54465 6.75590 6.85757 6.97224 7.11697 7.48042 7.65216 7.81440 8.13153 8.35576 9.47227 10.01871 10.36753 11.40447 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029393 B = 0.001795 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.388921 B =15593.027375 C =16184.656848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.194 4.194 3 C -0.160 4.160 4 C -0.047 4.047 5 C -0.274 4.274 6 C 0.595 3.405 7 O -0.532 6.532 8 N -0.714 5.714 9 C 0.100 3.900 10 C 0.507 3.493 11 O -0.540 6.540 12 N -0.709 5.709 13 C 0.135 3.865 14 H 0.087 0.913 15 C -0.153 4.153 16 C 0.168 3.832 17 H 0.052 0.948 18 C -0.165 4.165 19 N -0.718 5.718 20 C -0.239 4.239 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.930 5.930 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 S 0.214 5.786 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.410 0.590 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.401 0.599 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.055 0.945 43 H 0.047 0.953 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.748 25.115 2.095 29.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.314 4.314 3 C -0.191 4.191 4 C -0.081 4.081 5 C -0.395 4.395 6 C 0.381 3.619 7 O -0.410 6.410 8 N -0.369 5.369 9 C -0.027 4.027 10 C 0.292 3.708 11 O -0.418 6.418 12 N -0.360 5.360 13 C 0.031 3.969 14 H 0.105 0.895 15 C -0.211 4.211 16 C 0.058 3.942 17 H 0.070 0.930 18 C -0.225 4.225 19 N -0.360 5.360 20 C -0.370 4.370 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.578 5.578 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 S 0.481 5.519 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.162 0.838 33 H 0.171 0.829 34 H 0.248 0.752 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.236 0.764 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.220 0.780 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.954 23.545 2.104 27.971 hybrid contribution 0.970 0.726 -0.082 1.214 sum -13.984 24.270 2.022 28.084 Atomic orbital electron populations 1.20414 0.87288 1.03370 1.03454 1.24337 1.01726 0.97939 1.07396 1.19941 0.92587 0.99702 1.06869 1.20743 0.96214 0.95044 0.96049 1.24468 0.96721 0.98217 1.20059 1.16873 0.87046 0.81707 0.76243 1.90838 1.41792 1.58023 1.50365 1.45547 1.09067 1.06658 1.75603 1.21127 0.85088 0.91319 1.05206 1.20359 0.84831 0.89019 0.76612 1.90704 1.28919 1.72005 1.50128 1.45988 1.08115 1.08049 1.73825 1.21414 1.00752 0.77050 0.97699 0.89528 1.22054 1.00555 1.03181 0.95306 1.20396 0.93564 0.86666 0.93618 0.93047 1.22455 1.02040 0.98154 0.99868 1.42291 1.06775 0.98247 1.88667 1.19236 0.86245 0.88565 1.43000 0.91058 1.24748 0.96700 0.96523 1.02836 1.69669 1.22614 1.08133 1.57396 0.86124 0.82646 0.80232 0.77187 1.20569 1.21864 1.21887 1.83296 0.94013 1.07059 1.67503 0.91105 0.90119 0.90113 0.83751 0.82887 0.75169 0.87967 0.88011 0.76434 0.92966 0.93444 0.89972 0.94540 0.92561 0.93415 0.78046 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 10.33 36.01 0.37 -0.01 16 2 C -0.19 -1.36 6.28 -35.86 -0.23 -1.59 16 3 C -0.16 -1.16 10.00 -41.41 -0.41 -1.57 16 4 C -0.05 -0.42 10.01 -40.44 -0.40 -0.83 16 5 C -0.27 -2.81 6.45 -36.79 -0.24 -3.05 16 6 C 0.59 7.19 7.78 -12.90 -0.10 7.09 16 7 O -0.53 -7.75 16.84 5.19 0.09 -7.66 16 8 N -0.71 -8.00 5.52 -62.83 -0.35 -8.35 16 9 C 0.10 1.03 6.15 -5.19 -0.03 0.99 16 10 C 0.51 6.44 7.86 -10.98 -0.09 6.36 16 11 O -0.54 -8.67 15.33 5.56 0.09 -8.58 16 12 N -0.71 -8.72 4.39 -53.80 -0.24 -8.95 16 13 C 0.14 2.16 2.21 -67.92 -0.15 2.01 16 14 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 15 C -0.15 -2.51 9.33 37.16 0.35 -2.16 16 16 C 0.17 3.06 2.52 -67.93 -0.17 2.89 16 17 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 18 C -0.16 -2.79 9.33 37.15 0.35 -2.44 16 19 N -0.72 -16.92 4.43 -53.43 -0.24 -17.16 16 20 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 21 H 0.07 1.84 7.83 -52.48 -0.41 1.42 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 24 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 S 0.21 1.75 22.08 -107.50 -2.37 -0.63 16 29 H 0.07 0.28 8.11 -51.93 -0.42 -0.14 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.41 4.58 6.55 -40.82 -0.27 4.31 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.40 3.85 8.39 -40.82 -0.34 3.51 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.56 7.44 -51.93 -0.39 1.17 16 41 H 0.04 0.49 7.44 -51.93 -0.39 0.11 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.39 9.82 7.58 -40.82 -0.31 9.51 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 394.77 15.07 5.95 5.95 Total: -1.00 -32.74 394.77 -9.07 -41.81 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -6.70 Total: 12.59 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.00 Total: 0.79 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.09 Total: -61.11 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.17 Total: -16.25 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.37 Total: -0.63 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.74 -9.07 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282228430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.211 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds