Wall clock time and date at job start Tue Mar 31 2020 23:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33814 * 124.52152 * 2 1 4 4 C 1.37477 * 115.09811 * 180.02562 * 3 2 1 5 5 C 1.36641 * 113.29948 * 0.02562 * 4 3 2 6 6 C 1.46585 * 125.45971 * 180.02562 * 5 4 3 7 7 O 1.21702 * 119.99829 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99848 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99807 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47274 * 179.97438 * 9 8 6 11 11 O 1.21281 * 119.99836 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99950 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99746 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47303 * 35.00169 * 13 12 10 15 15 C 1.53003 * 109.46964 * 274.99939 * 13 12 10 16 16 C 1.53007 * 109.46912 * 155.00031 * 13 12 10 17 17 H 1.08998 * 109.47023 * 59.99967 * 16 13 12 18 18 C 1.52991 * 109.47028 * 299.99535 * 16 13 12 19 19 N 1.46497 * 109.46546 * 179.97438 * 16 13 12 20 20 C 1.36937 * 119.99862 * 204.99633 * 19 16 13 21 21 H 1.08004 * 120.00093 * 0.02562 * 20 19 16 22 22 C 1.38813 * 120.00404 * 180.02562 * 20 19 16 23 23 N 1.31620 * 119.99892 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00302 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47002 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47119 * 119.99811 * 24 22 20 27 27 H 1.48501 * 109.47495 * 240.00163 * 24 22 20 28 28 S 1.70620 * 124.52019 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47225 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46903 * 299.98324 * 1 2 3 31 31 H 1.09004 * 109.47160 * 59.98089 * 1 2 3 32 32 H 1.08001 * 122.45277 * 0.03913 * 3 2 1 33 33 H 1.08006 * 123.34712 * 180.02562 * 4 3 2 34 34 H 0.96996 * 120.00545 * 359.97438 * 8 6 5 35 35 H 1.09004 * 109.47405 * 299.99702 * 9 8 6 36 36 H 1.09004 * 109.47489 * 59.99882 * 9 8 6 37 37 H 0.97003 * 120.00073 * 359.97438 * 12 10 9 38 38 H 1.09006 * 109.47004 * 300.00248 * 15 13 12 39 39 H 1.08998 * 109.46959 * 60.00101 * 15 13 12 40 40 H 1.08997 * 109.47153 * 180.02562 * 15 13 12 41 41 H 1.09003 * 109.47118 * 60.00328 * 18 16 13 42 42 H 1.08994 * 109.47472 * 180.02562 * 18 16 13 43 43 H 1.08999 * 109.47666 * 300.00639 * 18 16 13 44 44 H 0.97003 * 120.00394 * 25.00480 * 19 16 13 45 45 H 0.96998 * 120.00358 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8774 -0.0006 5 6 3.9493 -0.4491 -0.0016 6 6 5.3123 -0.9883 -0.0018 7 8 6.2659 -0.2321 -0.0016 8 7 5.5096 -2.3216 -0.0034 9 6 6.8718 -2.8605 -0.0031 10 6 6.8163 -4.3665 -0.0044 11 8 5.7444 -4.9338 -0.0050 12 7 7.9579 -5.0829 -0.0049 13 6 7.9039 -6.5469 -0.0067 14 1 7.0496 -6.8783 -0.5969 15 6 7.7590 -7.0537 1.4296 16 6 9.1919 -7.1040 -0.6166 17 1 10.0463 -6.7726 -0.0264 18 6 9.3368 -6.5972 -2.0529 19 7 9.1381 -8.5679 -0.6179 20 6 10.2980 -9.2957 -0.6183 21 1 11.2526 -8.7904 -0.6173 22 6 10.2472 -10.6829 -0.6201 23 7 9.0839 -11.2988 -0.6218 24 14 11.8295 -11.6756 -0.6200 25 1 12.9928 -10.7527 -0.6185 26 1 11.8758 -12.5331 0.5916 27 1 11.8779 -12.5302 -1.8335 28 16 2.4739 -1.4058 -0.0006 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5136 0.8902 31 1 -0.3634 0.5141 -0.8898 32 1 1.8429 2.0965 0.0006 33 1 4.3550 1.6703 -0.0002 34 1 4.7496 -2.9243 -0.0040 35 1 7.3994 -2.5152 -0.8922 36 1 7.3981 -2.5175 0.8878 37 1 8.8153 -4.6291 -0.0047 38 1 8.6134 -6.7223 2.0198 39 1 6.8415 -6.6568 1.8640 40 1 7.7192 -8.1430 1.4283 41 1 9.3769 -5.5079 -2.0515 42 1 10.2540 -6.9944 -2.4875 43 1 8.4823 -6.9285 -2.6431 44 1 8.2808 -9.0218 -0.6185 45 1 9.0483 -12.2681 -0.6226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282228430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:42 Heat of formation + Delta-G solvation = -59.371493 kcal Electronic energy + Delta-G solvation = -25982.061801 eV Core-core repulsion = 22125.330345 eV Total energy + Delta-G solvation = -3856.731456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.41943 -40.50452 -38.75955 -38.29493 -35.77630 -35.49965 -33.62014 -33.04729 -31.41047 -30.14281 -29.51802 -27.45799 -25.91032 -24.64434 -24.16949 -22.51611 -21.67376 -21.55330 -20.51033 -19.38188 -19.17823 -17.88091 -17.62468 -17.06270 -16.78483 -16.73605 -16.40290 -15.99048 -15.73479 -15.35204 -15.11191 -14.91487 -14.78227 -14.71881 -14.30799 -14.08342 -13.98895 -13.82336 -13.41077 -13.32617 -13.18035 -12.94760 -12.92494 -12.75007 -12.72991 -12.57844 -12.26189 -12.09103 -11.87346 -11.73713 -11.47201 -11.36293 -11.09533 -10.98724 -10.45583 -10.14763 -9.65296 -9.58297 -9.00482 -7.91777 -5.20323 -0.54582 0.43626 0.87271 1.34025 1.47102 1.49535 1.49788 1.59260 1.64082 2.08942 2.30708 2.59985 3.42715 3.51598 3.73880 3.82305 3.87610 4.04177 4.18840 4.26016 4.30685 4.32761 4.36712 4.38155 4.60752 4.68006 4.74251 4.78897 4.89015 4.95608 5.02716 5.05104 5.08766 5.09000 5.16944 5.18181 5.33390 5.41115 5.48667 5.53171 5.58476 6.23411 6.29494 6.45413 6.92482 7.11999 7.36076 8.09796 8.32361 9.31799 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029393 B = 0.001795 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.388921 B =15593.027375 C =16184.656848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.184 4.184 3 C -0.168 4.168 4 C -0.044 4.044 5 C -0.308 4.308 6 C 0.595 3.405 7 O -0.564 6.564 8 N -0.715 5.715 9 C 0.105 3.895 10 C 0.512 3.488 11 O -0.574 6.574 12 N -0.696 5.696 13 C 0.151 3.849 14 H 0.063 0.937 15 C -0.144 4.144 16 C 0.166 3.834 17 H 0.063 0.937 18 C -0.156 4.156 19 N -0.730 5.730 20 C -0.231 4.231 21 H 0.081 0.919 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.969 3.031 25 H -0.264 1.264 26 H -0.297 1.297 27 H -0.298 1.298 28 S 0.211 5.789 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.169 0.831 33 H 0.155 0.845 34 H 0.410 0.590 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.419 0.581 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.032 0.968 44 H 0.372 0.628 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.751 27.534 2.211 31.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.304 4.304 3 C -0.197 4.197 4 C -0.079 4.079 5 C -0.428 4.428 6 C 0.383 3.617 7 O -0.445 6.445 8 N -0.369 5.369 9 C -0.021 4.021 10 C 0.298 3.702 11 O -0.454 6.454 12 N -0.349 5.349 13 C 0.046 3.954 14 H 0.082 0.918 15 C -0.202 4.202 16 C 0.057 3.943 17 H 0.081 0.919 18 C -0.216 4.216 19 N -0.370 5.370 20 C -0.362 4.362 21 H 0.099 0.901 22 C -0.269 4.269 23 N -0.621 5.621 24 Si 0.799 3.201 25 H -0.188 1.188 26 H -0.224 1.224 27 H -0.226 1.226 28 S 0.479 5.521 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.187 0.813 33 H 0.172 0.828 34 H 0.248 0.752 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.256 0.744 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.204 0.796 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.916 26.026 2.218 30.079 hybrid contribution 0.869 0.099 -0.113 0.882 sum -14.048 26.125 2.105 29.737 Atomic orbital electron populations 1.20566 0.85206 1.04163 1.04809 1.24754 1.03045 0.97140 1.05446 1.20165 0.91776 1.00971 1.06834 1.20970 0.97257 0.94677 0.94961 1.24422 0.96605 0.99092 1.22714 1.17097 0.87526 0.81554 0.75490 1.90806 1.42901 1.58606 1.52202 1.45594 1.09434 1.06552 1.75275 1.21189 0.85109 0.88976 1.06873 1.20726 0.84079 0.89951 0.75426 1.90701 1.30258 1.72869 1.51544 1.45712 1.09163 1.06336 1.73656 1.20935 0.98601 0.79148 0.96757 0.91833 1.21937 1.01293 1.01161 0.95855 1.20586 0.94964 0.83887 0.94829 0.91927 1.22314 1.00601 1.00578 0.98071 1.42471 1.05413 1.00524 1.88638 1.19628 0.87397 0.88912 1.40309 0.90142 1.25515 0.99380 0.97857 1.04154 1.69826 1.24629 1.07771 1.59838 0.85126 0.79897 0.78725 0.76322 1.18797 1.22429 1.22599 1.83288 0.93482 1.07682 1.67644 0.90663 0.88640 0.88666 0.81313 0.82777 0.75187 0.86275 0.86213 0.74361 0.91691 0.93096 0.93014 0.90608 0.93949 0.94861 0.79614 0.94223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 10.33 71.24 0.74 0.19 16 2 C -0.18 -2.23 6.28 24.68 0.15 -2.07 16 3 C -0.17 -2.10 10.00 21.08 0.21 -1.89 16 4 C -0.04 -0.76 10.01 21.72 0.22 -0.54 16 5 C -0.31 -6.18 6.45 24.08 0.16 -6.02 16 6 C 0.60 14.14 7.78 86.42 0.67 14.81 16 7 O -0.56 -16.20 16.84 -4.36 -0.07 -16.27 16 8 N -0.71 -15.47 5.52 -470.90 -2.60 -18.07 16 9 C 0.11 1.97 6.15 85.63 0.53 2.49 16 10 C 0.51 12.23 7.86 87.66 0.69 12.92 16 11 O -0.57 -18.15 15.33 -3.03 -0.05 -18.20 16 12 N -0.70 -15.69 4.39 -442.51 -1.94 -17.63 16 13 C 0.15 4.73 2.21 44.99 0.10 4.83 16 14 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 15 C -0.14 -4.69 9.33 71.98 0.67 -4.02 16 16 C 0.17 5.86 2.52 44.99 0.11 5.98 16 17 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 18 C -0.16 -5.00 9.33 71.98 0.67 -4.33 16 19 N -0.73 -34.62 4.43 -322.95 -1.43 -36.05 16 20 C -0.23 -12.15 9.93 84.03 0.83 -11.31 16 21 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 22 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 23 N -0.97 -58.51 13.06 21.65 0.28 -58.23 16 24 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 25 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 28 S 0.21 3.29 22.08 -56.49 -1.25 2.04 16 29 H 0.07 0.42 8.11 -2.39 -0.02 0.40 16 30 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 33 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.41 9.02 6.55 -92.71 -0.61 8.41 16 35 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.42 6.67 8.39 -92.71 -0.78 5.89 16 38 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.05 2.01 7.44 -2.39 -0.02 1.99 16 41 H 0.08 1.82 7.44 -2.39 -0.02 1.80 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.37 19.52 7.58 -92.71 -0.70 18.82 16 45 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -71.75 394.77 0.14 -71.61 By element: Atomic # 1 Polarization: 37.37 SS G_CDS: -1.05 Total: 36.32 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 6.22 Total: 7.21 kcal Atomic # 7 Polarization: -124.29 SS G_CDS: -5.69 Total: -129.98 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.12 Total: -34.47 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.25 Total: 2.04 kcal Total: -71.75 0.14 -71.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282228430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.239 kcal (2) G-P(sol) polarization free energy of solvation -71.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds