Wall clock time and date at job start Tue Mar 31 2020 23:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33812 * 124.52085 * 2 1 4 4 C 1.37474 * 115.09850 * 179.70927 * 3 2 1 5 5 C 1.36643 * 113.29694 * 0.49457 * 4 3 2 6 6 C 1.46582 * 125.45897 * 179.80274 * 5 4 3 7 7 O 1.21704 * 120.00286 * 359.71692 * 6 5 4 8 8 N 1.34779 * 120.00026 * 179.71969 * 6 5 4 9 9 C 1.46499 * 119.99730 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46870 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.47130 * 294.99812 * 10 9 8 12 12 C 1.53006 * 109.47203 * 174.99853 * 10 9 8 13 13 N 1.46906 * 109.47132 * 54.99989 * 10 9 8 14 14 C 1.46893 * 111.00136 * 66.04414 * 13 10 9 15 15 C 1.46901 * 110.99853 * 190.00109 * 13 10 9 16 16 C 1.50701 * 109.46921 * 169.99766 * 15 13 10 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 13 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 13 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47268 * 89.99721 * 23 21 19 25 25 H 1.48498 * 109.47211 * 209.99980 * 23 21 19 26 26 H 1.48505 * 109.46734 * 329.99774 * 23 21 19 27 27 S 1.70611 * 124.52184 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46970 * 299.99760 * 1 2 3 30 30 H 1.09004 * 109.47347 * 59.99671 * 1 2 3 31 31 H 1.08001 * 122.45017 * 359.95707 * 3 2 1 32 32 H 1.08004 * 123.35177 * 180.29916 * 4 3 2 33 33 H 0.97000 * 120.00024 * 359.97438 * 8 6 5 34 34 H 1.08999 * 109.47772 * 59.99986 * 9 8 6 35 35 H 1.08995 * 109.47198 * 299.99666 * 9 8 6 36 36 H 1.09002 * 109.46733 * 60.00059 * 12 10 9 37 37 H 1.09001 * 109.47141 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.47044 * 300.00012 * 12 10 9 39 39 H 1.08999 * 109.47439 * 183.95618 * 14 13 10 40 40 H 1.08997 * 109.47257 * 303.95746 * 14 13 10 41 41 H 1.09006 * 109.46808 * 63.95302 * 14 13 10 42 42 H 1.09002 * 109.47401 * 49.99794 * 15 13 10 43 43 H 1.09001 * 109.46874 * 289.99807 * 15 13 10 44 44 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 45 45 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6215 0.8775 0.0063 5 6 3.9492 -0.4491 0.0007 6 6 5.3123 -0.9883 0.0011 7 8 6.2659 -0.2321 0.0017 8 7 5.5096 -2.3215 0.0009 9 6 6.8719 -2.8604 0.0019 10 6 6.8155 -4.3894 0.0020 11 1 6.3675 -4.7364 0.9331 12 6 8.2329 -4.9520 -0.1227 13 7 6.0044 -4.8496 -1.1331 14 6 6.6532 -4.5238 -2.4101 15 6 5.7296 -6.2892 -1.0343 16 6 4.7028 -6.6766 -2.0672 17 8 4.2454 -5.8361 -2.8126 18 7 4.2936 -7.9572 -2.1633 19 6 3.3599 -8.3097 -3.1033 20 1 2.9521 -7.5611 -3.7665 21 6 2.9377 -9.6297 -3.2021 22 7 3.4336 -10.5404 -2.3949 23 14 1.6660 -10.1102 -4.4833 24 1 2.3529 -10.4962 -5.7421 25 1 0.8682 -11.2582 -3.9827 26 1 0.7660 -8.9580 -4.7438 27 16 2.4739 -1.4057 0.0006 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8429 2.0964 -0.0007 32 1 4.3550 1.6702 0.0118 33 1 4.7496 -2.9243 0.0007 34 1 7.3980 -2.5165 0.8924 35 1 7.3995 -2.5160 -0.8875 36 1 8.8347 -4.6105 0.7196 37 1 8.1928 -6.0413 -0.1222 38 1 8.6809 -4.6050 -1.0538 39 1 5.9999 -4.8121 -3.2336 40 1 6.8454 -3.4520 -2.4570 41 1 7.5959 -5.0657 -2.4873 42 1 5.3485 -6.5190 -0.0393 43 1 6.6493 -6.8475 -1.2091 44 1 4.6597 -8.6293 -1.5675 45 1 3.1390 -11.4620 -2.4641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282343686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:14 Heat of formation + Delta-G solvation = -35.297067 kcal Electronic energy + Delta-G solvation = -26865.601388 eV Core-core repulsion = 23009.913878 eV Total energy + Delta-G solvation = -3855.687510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.88470 -38.91780 -37.87907 -37.20111 -34.36236 -33.81925 -32.25567 -31.29542 -30.95412 -28.04894 -27.81757 -26.01264 -25.33506 -23.90066 -23.49189 -21.35425 -20.21724 -19.16322 -19.03696 -17.92847 -17.85125 -16.60633 -16.32342 -15.77026 -15.64942 -15.04823 -14.87800 -14.81757 -14.56589 -14.14617 -14.06120 -13.79694 -13.51438 -13.32122 -13.17988 -13.02029 -12.85113 -12.51860 -12.31764 -12.17089 -11.97487 -11.83870 -11.75755 -11.46144 -11.24273 -11.23199 -10.97190 -10.94231 -10.76068 -10.40971 -10.23771 -10.06994 -9.49548 -9.11247 -8.72139 -8.67129 -8.50117 -8.00189 -7.87898 -6.43813 -3.84562 0.41384 1.36914 1.78720 2.27395 3.14050 3.15898 3.24029 3.24900 3.30400 3.88056 3.93436 4.22388 4.57342 4.68344 4.81456 4.96336 4.99198 5.10611 5.17790 5.19066 5.24289 5.24540 5.41014 5.43896 5.50639 5.56253 5.66685 5.71722 5.76479 5.84785 5.87963 5.90243 5.97842 6.04075 6.13316 6.23492 6.25684 6.41621 6.57448 7.20642 7.32232 7.53271 7.53470 8.04378 8.18337 8.59782 9.16345 9.52559 10.04323 10.73918 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010086 B = 0.003045 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.399964 B = 9192.525629 C =11507.935088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.200 4.200 3 C -0.162 4.162 4 C -0.055 4.055 5 C -0.272 4.272 6 C 0.590 3.410 7 O -0.543 6.543 8 N -0.709 5.709 9 C 0.133 3.867 10 C 0.062 3.938 11 H 0.089 0.911 12 C -0.184 4.184 13 N -0.512 5.512 14 C 0.017 3.983 15 C 0.044 3.956 16 C 0.444 3.556 17 O -0.576 6.576 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 S 0.227 5.773 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.409 0.591 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.021 0.979 42 H 0.087 0.913 43 H 0.050 0.950 44 H 0.391 0.609 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 15.944 8.919 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.320 4.320 3 C -0.192 4.192 4 C -0.089 4.089 5 C -0.392 4.392 6 C 0.376 3.624 7 O -0.423 6.423 8 N -0.360 5.360 9 C 0.009 3.991 10 C -0.047 4.047 11 H 0.107 0.893 12 C -0.244 4.244 13 N -0.236 5.236 14 C -0.131 4.131 15 C -0.087 4.087 16 C 0.229 3.771 17 O -0.460 6.460 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 S 0.495 5.505 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.159 0.841 32 H 0.168 0.832 33 H 0.246 0.754 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.040 0.960 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.903 15.487 8.437 17.659 hybrid contribution 0.331 0.026 -0.290 0.441 sum 1.234 15.513 8.148 17.566 Atomic orbital electron populations 1.20393 0.87458 1.03375 1.03213 1.24337 1.01708 0.98198 1.07803 1.19891 0.92629 0.99516 1.07197 1.20686 0.96074 0.95097 0.97018 1.24603 0.97176 0.98197 1.19258 1.16941 0.86752 0.82318 0.76388 1.90798 1.41931 1.58292 1.51260 1.45712 1.09930 1.06034 1.74333 1.21407 0.83235 0.92188 1.02268 1.22062 0.93009 0.93856 0.95820 0.89334 1.22392 0.97294 1.01894 1.02776 1.61803 1.44862 1.14962 1.01934 1.22599 0.97472 1.00154 0.92839 1.21896 0.98360 0.88215 1.00241 1.19726 0.86446 0.83424 0.87495 1.90491 1.59829 1.49636 1.46085 1.41865 1.37996 1.07202 1.33045 1.19686 1.16839 0.94019 1.12215 0.87921 1.25247 0.98830 0.95504 0.98331 1.69611 1.43988 1.02681 1.38085 0.85878 0.80202 0.78223 0.80115 1.20454 1.20942 1.19397 1.83461 0.93785 1.06531 1.66709 0.91073 0.90341 0.90246 0.84055 0.83222 0.75439 0.91008 0.91167 0.91886 0.91709 0.91702 0.88524 0.92205 0.96049 0.89470 0.93188 0.77544 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 10.33 36.01 0.37 -0.26 16 2 C -0.20 -2.02 6.28 -35.86 -0.23 -2.24 16 3 C -0.16 -1.62 10.00 -41.41 -0.41 -2.03 16 4 C -0.06 -0.65 10.01 -40.44 -0.40 -1.06 16 5 C -0.27 -3.57 6.45 -36.80 -0.24 -3.81 16 6 C 0.59 8.73 7.78 -12.89 -0.10 8.63 16 7 O -0.54 -9.42 16.84 5.19 0.09 -9.34 16 8 N -0.71 -9.50 5.38 -61.65 -0.33 -9.83 16 9 C 0.13 1.61 4.85 -4.04 -0.02 1.59 16 10 C 0.06 0.72 2.47 -67.70 -0.17 0.55 16 11 H 0.09 0.95 7.93 -51.93 -0.41 0.54 16 12 C -0.18 -1.86 8.44 37.16 0.31 -1.54 16 13 N -0.51 -7.69 3.89 -236.32 -0.92 -8.61 16 14 C 0.02 0.26 8.32 60.06 0.50 0.76 16 15 C 0.04 0.73 5.02 -4.97 -0.02 0.70 16 16 C 0.44 9.90 7.51 -10.98 -0.08 9.82 16 17 O -0.58 -14.71 13.88 5.55 0.08 -14.63 16 18 N -0.56 -13.76 5.29 -10.96 -0.06 -13.82 16 19 C -0.30 -8.08 9.68 -14.94 -0.14 -8.22 16 20 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.08 13.05 55.50 0.72 -23.35 16 23 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 S 0.23 2.62 22.08 -107.50 -2.37 0.25 16 28 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.41 5.48 7.25 -40.82 -0.30 5.18 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.91 6.71 -51.93 -0.35 0.56 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.67 6.91 -51.93 -0.36 0.31 16 38 H 0.06 0.68 6.42 -51.93 -0.33 0.34 16 39 H 0.10 1.87 5.88 -51.93 -0.31 1.56 16 40 H 0.06 0.88 6.41 -51.93 -0.33 0.54 16 41 H 0.02 0.30 6.46 -51.93 -0.34 -0.03 16 42 H 0.09 1.28 7.93 -51.93 -0.41 0.87 16 43 H 0.05 0.76 7.06 -51.93 -0.37 0.40 16 44 H 0.39 9.17 7.90 -40.82 -0.32 8.84 16 45 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -31.81 383.05 -9.07 -40.87 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -6.29 Total: 13.64 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -0.73 Total: 3.39 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.59 Total: -55.61 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.16 Total: -23.97 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.37 Total: 0.25 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.81 -9.07 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282343686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.577 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds