Wall clock time and date at job start Tue Mar 31 2020 23:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33812 * 124.52085 * 2 1 4 4 C 1.37474 * 115.09850 * 179.70927 * 3 2 1 5 5 C 1.36643 * 113.29694 * 0.49457 * 4 3 2 6 6 C 1.46582 * 125.45897 * 179.80274 * 5 4 3 7 7 O 1.21704 * 120.00286 * 359.71692 * 6 5 4 8 8 N 1.34779 * 120.00026 * 179.71969 * 6 5 4 9 9 C 1.46499 * 119.99730 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46870 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.47130 * 294.99812 * 10 9 8 12 12 C 1.53006 * 109.47203 * 174.99853 * 10 9 8 13 13 N 1.46906 * 109.47132 * 54.99989 * 10 9 8 14 14 C 1.46893 * 111.00136 * 66.04414 * 13 10 9 15 15 C 1.46901 * 110.99853 * 190.00109 * 13 10 9 16 16 C 1.50701 * 109.46921 * 169.99766 * 15 13 10 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 13 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 13 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47268 * 89.99721 * 23 21 19 25 25 H 1.48498 * 109.47211 * 209.99980 * 23 21 19 26 26 H 1.48505 * 109.46734 * 329.99774 * 23 21 19 27 27 S 1.70611 * 124.52184 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46970 * 299.99760 * 1 2 3 30 30 H 1.09004 * 109.47347 * 59.99671 * 1 2 3 31 31 H 1.08001 * 122.45017 * 359.95707 * 3 2 1 32 32 H 1.08004 * 123.35177 * 180.29916 * 4 3 2 33 33 H 0.97000 * 120.00024 * 359.97438 * 8 6 5 34 34 H 1.08999 * 109.47772 * 59.99986 * 9 8 6 35 35 H 1.08995 * 109.47198 * 299.99666 * 9 8 6 36 36 H 1.09002 * 109.46733 * 60.00059 * 12 10 9 37 37 H 1.09001 * 109.47141 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.47044 * 300.00012 * 12 10 9 39 39 H 1.08999 * 109.47439 * 183.95618 * 14 13 10 40 40 H 1.08997 * 109.47257 * 303.95746 * 14 13 10 41 41 H 1.09006 * 109.46808 * 63.95302 * 14 13 10 42 42 H 1.09002 * 109.47401 * 49.99794 * 15 13 10 43 43 H 1.09001 * 109.46874 * 289.99807 * 15 13 10 44 44 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 45 45 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6215 0.8775 0.0063 5 6 3.9492 -0.4491 0.0007 6 6 5.3123 -0.9883 0.0011 7 8 6.2659 -0.2321 0.0017 8 7 5.5096 -2.3215 0.0009 9 6 6.8719 -2.8604 0.0019 10 6 6.8155 -4.3894 0.0020 11 1 6.3675 -4.7364 0.9331 12 6 8.2329 -4.9520 -0.1227 13 7 6.0044 -4.8496 -1.1331 14 6 6.6532 -4.5238 -2.4101 15 6 5.7296 -6.2892 -1.0343 16 6 4.7028 -6.6766 -2.0672 17 8 4.2454 -5.8361 -2.8126 18 7 4.2936 -7.9572 -2.1633 19 6 3.3599 -8.3097 -3.1033 20 1 2.9521 -7.5611 -3.7665 21 6 2.9377 -9.6297 -3.2021 22 7 3.4336 -10.5404 -2.3949 23 14 1.6660 -10.1102 -4.4833 24 1 2.3529 -10.4962 -5.7421 25 1 0.8682 -11.2582 -3.9827 26 1 0.7660 -8.9580 -4.7438 27 16 2.4739 -1.4057 0.0006 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8429 2.0964 -0.0007 32 1 4.3550 1.6702 0.0118 33 1 4.7496 -2.9243 0.0007 34 1 7.3980 -2.5165 0.8924 35 1 7.3995 -2.5160 -0.8875 36 1 8.8347 -4.6105 0.7196 37 1 8.1928 -6.0413 -0.1222 38 1 8.6809 -4.6050 -1.0538 39 1 5.9999 -4.8121 -3.2336 40 1 6.8454 -3.4520 -2.4570 41 1 7.5959 -5.0657 -2.4873 42 1 5.3485 -6.5190 -0.0393 43 1 6.6493 -6.8475 -1.2091 44 1 4.6597 -8.6293 -1.5675 45 1 3.1390 -11.4620 -2.4641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282343686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:14 Heat of formation + Delta-G solvation = -57.782253 kcal Electronic energy + Delta-G solvation = -26866.576419 eV Core-core repulsion = 23009.913878 eV Total energy + Delta-G solvation = -3856.662541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.01822 -40.35769 -38.98331 -38.45145 -35.96549 -35.32502 -33.24469 -33.06427 -32.04346 -29.32003 -28.83517 -27.04573 -26.83137 -25.32570 -24.38750 -22.34859 -21.43999 -20.76961 -20.02697 -19.77737 -18.87939 -17.96831 -17.33875 -17.03106 -16.75433 -16.56882 -16.26946 -16.05881 -15.82571 -15.70621 -15.05801 -14.89931 -14.78546 -14.59197 -14.16826 -13.98924 -13.90189 -13.67506 -13.44930 -13.33200 -13.08619 -12.95577 -12.84518 -12.80241 -12.69534 -12.42778 -12.37738 -12.27283 -12.10646 -11.83612 -11.75528 -11.41576 -11.22028 -10.23981 -10.19659 -9.95443 -9.61125 -9.54581 -9.17870 -8.43301 -5.90970 -0.49705 0.47984 0.92031 1.38793 1.39187 1.43132 1.55185 2.10469 2.11452 2.19717 2.30426 2.76687 3.24309 3.46557 3.71150 3.81680 3.90393 4.06490 4.25429 4.27724 4.29341 4.37441 4.40058 4.55312 4.57158 4.61705 4.67750 4.68393 4.73708 4.74987 4.85772 4.99401 5.06376 5.08860 5.18804 5.20152 5.29053 5.38541 5.43416 5.44755 5.89847 6.08370 6.19930 6.44176 6.65476 7.08181 7.17849 7.62340 8.18562 8.74127 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010086 B = 0.003045 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.399964 B = 9192.525629 C =11507.935088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.190 4.190 3 C -0.166 4.166 4 C -0.052 4.052 5 C -0.303 4.303 6 C 0.586 3.414 7 O -0.577 6.577 8 N -0.706 5.706 9 C 0.133 3.867 10 C 0.069 3.931 11 H 0.105 0.895 12 C -0.180 4.180 13 N -0.525 5.525 14 C 0.026 3.974 15 C 0.058 3.942 16 C 0.443 3.557 17 O -0.611 6.611 18 N -0.576 5.576 19 C -0.328 4.328 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.988 3.012 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.273 1.273 27 S 0.209 5.791 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.170 0.830 32 H 0.153 0.847 33 H 0.409 0.591 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.395 0.605 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 16.227 9.979 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.310 4.310 3 C -0.195 4.195 4 C -0.087 4.087 5 C -0.423 4.423 6 C 0.374 3.626 7 O -0.460 6.460 8 N -0.356 5.356 9 C 0.009 3.991 10 C -0.040 4.040 11 H 0.123 0.877 12 C -0.239 4.239 13 N -0.249 5.249 14 C -0.121 4.121 15 C -0.073 4.073 16 C 0.230 3.770 17 O -0.497 6.497 18 N -0.214 5.214 19 C -0.458 4.458 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.563 5.563 23 Si 0.812 3.188 24 H -0.199 1.199 25 H -0.197 1.197 26 H -0.197 1.197 27 S 0.477 5.523 28 H 0.090 0.910 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.188 0.812 32 H 0.171 0.829 33 H 0.246 0.754 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.131 0.869 43 H 0.088 0.912 44 H 0.229 0.771 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.496 15.750 9.518 18.409 hybrid contribution 0.439 0.044 -0.601 0.746 sum 0.935 15.794 8.917 18.162 Atomic orbital electron populations 1.20544 0.85312 1.03971 1.04792 1.24742 1.03024 0.97201 1.06032 1.20140 0.91742 1.00847 1.06811 1.20945 0.97196 0.94706 0.95811 1.24558 0.96926 0.99032 1.21802 1.17205 0.87153 0.82468 0.75773 1.90763 1.43077 1.58986 1.53202 1.45761 1.10476 1.05722 1.73637 1.21498 0.82652 0.92509 1.02424 1.22106 0.93775 0.93265 0.94805 0.87666 1.22351 0.96153 1.01840 1.03526 1.61708 1.46440 1.14081 1.02717 1.22394 0.97079 1.00642 0.92027 1.21760 0.97158 0.89323 0.99091 1.20784 0.86324 0.82267 0.87587 1.90478 1.61115 1.50474 1.47651 1.41926 1.38209 1.08159 1.33076 1.19624 1.18547 0.94200 1.13385 0.90362 1.25961 1.00275 0.95030 0.99959 1.69670 1.44721 1.02980 1.38935 0.84992 0.77945 0.77880 0.77937 1.19907 1.19685 1.19742 1.83482 0.93778 1.07716 1.67324 0.91027 0.88321 0.88880 0.81242 0.82942 0.75448 0.89647 0.92193 0.89719 0.91512 0.92184 0.92614 0.91643 0.94465 0.86929 0.91238 0.77105 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 10.33 71.24 0.74 -0.35 16 2 C -0.19 -3.52 6.28 24.68 0.15 -3.37 16 3 C -0.17 -3.02 10.00 21.08 0.21 -2.81 16 4 C -0.05 -1.21 10.01 21.72 0.22 -0.99 16 5 C -0.30 -8.03 6.45 24.07 0.16 -7.87 16 6 C 0.59 17.63 7.78 86.42 0.67 18.30 16 7 O -0.58 -20.42 16.84 -4.36 -0.07 -20.49 16 8 N -0.71 -18.83 5.38 -467.17 -2.52 -21.35 16 9 C 0.13 3.08 4.85 86.38 0.42 3.50 16 10 C 0.07 1.45 2.47 44.92 0.11 1.56 16 11 H 0.11 1.93 7.93 -2.39 -0.02 1.91 16 12 C -0.18 -3.12 8.44 71.98 0.61 -2.51 16 13 N -0.53 -15.26 3.89 -901.59 -3.51 -18.76 16 14 C 0.03 0.83 8.32 127.69 1.06 1.89 16 15 C 0.06 1.81 5.02 85.56 0.43 2.24 16 16 C 0.44 19.96 7.51 87.66 0.66 20.62 16 17 O -0.61 -32.15 13.88 -3.07 -0.04 -32.20 16 18 N -0.58 -28.46 5.29 -306.98 -1.62 -30.08 16 19 C -0.33 -18.16 9.68 84.04 0.81 -17.35 16 20 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 21 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 22 N -0.92 -48.93 13.05 21.66 0.28 -48.64 16 23 Si 0.99 42.36 29.55 68.60 2.03 44.38 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 S 0.21 4.79 22.08 -56.49 -1.25 3.54 16 28 H 0.07 0.89 8.11 -2.39 -0.02 0.87 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.41 10.94 7.25 -92.71 -0.67 10.27 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 1.53 6.71 -2.39 -0.02 1.51 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.16 6.91 -2.39 -0.02 1.15 16 38 H 0.06 1.12 6.42 -2.39 -0.02 1.10 16 39 H 0.06 2.22 5.88 -2.39 -0.01 2.20 16 40 H 0.06 1.93 6.41 -2.39 -0.02 1.91 16 41 H 0.04 1.02 6.46 -2.38 -0.02 1.01 16 42 H 0.11 3.02 7.93 -2.39 -0.02 3.00 16 43 H 0.07 1.96 7.06 -2.39 -0.02 1.95 16 44 H 0.40 18.57 7.90 -92.71 -0.73 17.84 16 45 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -70.35 383.05 -0.35 -70.70 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: -0.37 Total: 40.24 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 6.71 Total: 12.66 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -7.36 Total: -118.84 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.12 Total: -52.69 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.25 Total: 3.54 kcal Total: -70.35 -0.35 -70.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282343686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.919 kcal (2) G-P(sol) polarization free energy of solvation -70.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds