Wall clock time and date at job start Tue Mar 31 2020 23:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33807 * 124.52560 * 2 1 4 4 C 1.37469 * 115.10437 * 179.70464 * 3 2 1 5 5 C 1.36648 * 113.29368 * 0.49940 * 4 3 2 6 6 C 1.46591 * 125.45759 * 179.79738 * 5 4 3 7 7 O 1.21701 * 119.99910 * 359.72123 * 6 5 4 8 8 N 1.34771 * 119.99644 * 179.72222 * 6 5 4 9 9 C 1.46505 * 119.99622 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.47196 * 64.99810 * 10 9 8 12 12 C 1.52997 * 109.47504 * 184.99959 * 10 9 8 13 13 N 1.46905 * 109.47150 * 305.00258 * 10 9 8 14 14 C 1.46902 * 110.99582 * 298.95140 * 13 10 9 15 15 C 1.46900 * 111.00052 * 175.00054 * 13 10 9 16 16 C 1.50701 * 109.46959 * 189.99593 * 15 13 10 17 17 O 1.21286 * 120.00205 * 359.97438 * 16 15 13 18 18 N 1.34779 * 119.99829 * 179.97438 * 16 15 13 19 19 C 1.37099 * 119.99889 * 179.97438 * 18 16 15 20 20 H 1.07995 * 120.00048 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99660 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00572 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99576 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47245 * 59.99837 * 23 21 19 25 25 H 1.48503 * 109.46735 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46811 * 299.99775 * 23 21 19 27 27 S 1.70623 * 124.52039 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47227 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46919 * 299.99569 * 1 2 3 30 30 H 1.08998 * 109.47667 * 59.99615 * 1 2 3 31 31 H 1.08001 * 122.44828 * 359.96701 * 3 2 1 32 32 H 1.07997 * 123.35585 * 180.29793 * 4 3 2 33 33 H 0.96996 * 120.00772 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47068 * 299.99729 * 9 8 6 35 35 H 1.09001 * 109.47372 * 59.99816 * 9 8 6 36 36 H 1.09004 * 109.46881 * 300.00361 * 12 10 9 37 37 H 1.09002 * 109.47016 * 59.99741 * 12 10 9 38 38 H 1.09000 * 109.47400 * 180.02562 * 12 10 9 39 39 H 1.08999 * 109.47144 * 60.00259 * 14 13 10 40 40 H 1.08999 * 109.46960 * 180.02562 * 14 13 10 41 41 H 1.09005 * 109.46988 * 299.99976 * 14 13 10 42 42 H 1.09005 * 109.47080 * 309.99637 * 15 13 10 43 43 H 1.08999 * 109.47125 * 69.99595 * 15 13 10 44 44 H 0.96998 * 119.99918 * 0.02562 * 18 16 15 45 45 H 0.96996 * 120.00499 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1024 0.0000 4 6 3.6215 0.8774 0.0064 5 6 3.9492 -0.4492 0.0007 6 6 5.3123 -0.9885 0.0012 7 8 6.2658 -0.2322 0.0019 8 7 5.5095 -2.3217 0.0009 9 6 6.8718 -2.8606 0.0019 10 6 6.8154 -4.3895 0.0019 11 1 6.3687 -4.7367 -0.9298 12 6 8.2325 -4.9522 0.1286 13 7 6.0026 -4.8496 1.1358 14 6 6.5893 -4.4204 2.4124 15 6 5.8274 -6.3077 1.1007 16 6 4.7979 -6.7147 2.1232 17 8 4.2632 -5.8730 2.8136 18 7 4.4715 -8.0140 2.2705 19 6 3.5353 -8.3843 3.2011 20 1 3.0591 -7.6349 3.8159 21 6 3.1991 -9.7239 3.3533 22 7 3.7789 -10.6359 2.6057 23 14 1.9230 -10.2284 4.6209 24 1 0.6299 -9.5668 4.3118 25 1 1.7464 -11.7025 4.5858 26 1 2.3788 -9.8170 5.9730 27 16 2.4739 -1.4058 0.0006 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8429 2.0964 -0.0005 32 1 4.3549 1.6701 0.0119 33 1 4.7495 -2.9244 0.0007 34 1 7.3995 -2.5161 -0.8875 35 1 7.3979 -2.5168 0.8924 36 1 8.8356 -4.6108 -0.7127 37 1 8.6793 -4.6051 1.0603 38 1 8.1924 -6.0415 0.1282 39 1 6.6433 -3.3321 2.4398 40 1 5.9681 -4.7746 3.2350 41 1 7.5921 -4.8366 2.5095 42 1 5.4929 -6.6096 0.1082 43 1 6.7766 -6.7932 1.3276 44 1 4.8994 -8.6871 1.7186 45 1 3.5445 -11.5711 2.7122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282343687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:18 Heat of formation + Delta-G solvation = -34.759605 kcal Electronic energy + Delta-G solvation = -26852.625913 eV Core-core repulsion = 22996.961709 eV Total energy + Delta-G solvation = -3855.664204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.90731 -38.92650 -37.88902 -37.20517 -34.36012 -33.81824 -32.26321 -31.28930 -30.94798 -28.13528 -27.77458 -25.97599 -25.34336 -23.91366 -23.50145 -21.36424 -20.23197 -19.16144 -19.02156 -17.93677 -17.84565 -16.62984 -16.33565 -15.77702 -15.64622 -15.07506 -14.87525 -14.79577 -14.56506 -14.15770 -14.07489 -13.80573 -13.53079 -13.33231 -13.17643 -13.02076 -12.87229 -12.52448 -12.29783 -12.17629 -11.98417 -11.81813 -11.78019 -11.46757 -11.22807 -11.21902 -10.97947 -10.92788 -10.75322 -10.45938 -10.23191 -10.08096 -9.48317 -9.12717 -8.73152 -8.68213 -8.49146 -7.99990 -7.88229 -6.43532 -3.84360 0.40341 1.35902 1.77648 2.26436 3.12871 3.18257 3.22697 3.24288 3.28369 3.88260 3.94109 4.22561 4.56402 4.66951 4.81109 4.95862 4.98659 5.10904 5.16869 5.19138 5.23647 5.24290 5.40161 5.43770 5.51136 5.54884 5.65770 5.71280 5.76406 5.84204 5.88327 5.90574 5.97998 6.03159 6.15425 6.22570 6.25931 6.40489 6.56487 7.20690 7.32230 7.52200 7.53233 8.04335 8.17091 8.59985 9.16389 9.52715 10.04516 10.74135 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.002973 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.941447 B = 9414.962981 C =11664.601023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.200 4.200 3 C -0.162 4.162 4 C -0.055 4.055 5 C -0.272 4.272 6 C 0.590 3.410 7 O -0.543 6.543 8 N -0.710 5.710 9 C 0.132 3.868 10 C 0.062 3.938 11 H 0.089 0.911 12 C -0.186 4.186 13 N -0.512 5.512 14 C 0.016 3.984 15 C 0.044 3.956 16 C 0.443 3.557 17 O -0.577 6.577 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.274 1.274 27 S 0.227 5.773 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.410 0.590 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.021 0.979 42 H 0.087 0.913 43 H 0.051 0.949 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.811 16.228 -9.155 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.320 4.320 3 C -0.192 4.192 4 C -0.089 4.089 5 C -0.393 4.393 6 C 0.376 3.624 7 O -0.422 6.422 8 N -0.361 5.361 9 C 0.008 3.992 10 C -0.047 4.047 11 H 0.107 0.893 12 C -0.245 4.245 13 N -0.235 5.235 14 C -0.132 4.132 15 C -0.087 4.087 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 S 0.495 5.505 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.160 0.840 32 H 0.168 0.832 33 H 0.246 0.754 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.039 0.961 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.320 15.730 -8.724 17.990 hybrid contribution 0.395 0.087 0.358 0.540 sum 0.715 15.818 -8.366 17.908 Atomic orbital electron populations 1.20394 0.87455 1.03372 1.03220 1.24337 1.01706 0.98194 1.07791 1.19890 0.92630 0.99524 1.07187 1.20686 0.96079 0.95099 0.96988 1.24606 0.97171 0.98197 1.19286 1.16942 0.86758 0.82313 0.76383 1.90799 1.41935 1.58282 1.51222 1.45724 1.09936 1.06053 1.74377 1.21427 0.83257 0.92190 1.02349 1.22061 0.92930 0.93765 0.95940 0.89276 1.22397 0.97332 1.02000 1.02752 1.61827 1.47672 1.11677 1.02365 1.22608 0.97486 1.00278 0.92803 1.21884 0.98433 0.88039 1.00355 1.19727 0.86777 0.83387 0.87224 1.90489 1.56502 1.50259 1.48819 1.41859 1.37418 1.05800 1.34997 1.19639 1.16416 0.92596 1.14202 0.87972 1.25246 0.98716 0.95485 0.98420 1.69597 1.43124 1.01803 1.39853 0.85939 0.80643 0.77195 0.80572 1.19878 1.21002 1.19934 1.83459 0.93784 1.06532 1.66731 0.91076 0.90242 0.90337 0.84050 0.83217 0.75399 0.90970 0.91118 0.91863 0.91766 0.91591 0.92108 0.88566 0.96099 0.89461 0.93139 0.77538 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.33 36.01 0.37 -0.25 16 2 C -0.20 -1.99 6.28 -35.86 -0.23 -2.22 16 3 C -0.16 -1.60 9.99 -41.42 -0.41 -2.01 16 4 C -0.06 -0.64 10.01 -40.44 -0.40 -1.05 16 5 C -0.27 -3.55 6.45 -36.79 -0.24 -3.78 16 6 C 0.59 8.67 7.78 -12.89 -0.10 8.57 16 7 O -0.54 -9.37 16.84 5.19 0.09 -9.28 16 8 N -0.71 -9.43 5.38 -61.64 -0.33 -9.76 16 9 C 0.13 1.59 4.69 -4.04 -0.02 1.57 16 10 C 0.06 0.72 2.50 -67.71 -0.17 0.55 16 11 H 0.09 0.96 8.03 -51.93 -0.42 0.54 16 12 C -0.19 -1.88 8.50 37.16 0.32 -1.56 16 13 N -0.51 -7.70 3.93 -236.32 -0.93 -8.63 16 14 C 0.02 0.25 8.46 60.07 0.51 0.76 16 15 C 0.04 0.73 4.89 -4.98 -0.02 0.70 16 16 C 0.44 9.92 7.47 -10.98 -0.08 9.84 16 17 O -0.58 -14.73 13.91 5.55 0.08 -14.65 16 18 N -0.56 -13.78 5.29 -10.97 -0.06 -13.83 16 19 C -0.30 -8.11 9.68 -14.93 -0.14 -8.26 16 20 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16 23 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 27 S 0.23 2.59 22.08 -107.50 -2.37 0.21 16 28 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.41 5.44 7.25 -40.82 -0.30 5.14 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.91 6.70 -51.93 -0.35 0.57 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.68 6.39 -51.93 -0.33 0.34 16 38 H 0.07 0.68 6.75 -51.93 -0.35 0.33 16 39 H 0.06 0.91 6.44 -51.93 -0.33 0.57 16 40 H 0.10 1.86 5.82 -51.93 -0.30 1.56 16 41 H 0.02 0.29 6.28 -51.93 -0.33 -0.03 16 42 H 0.09 1.29 8.00 -51.93 -0.42 0.87 16 43 H 0.05 0.77 6.94 -51.93 -0.36 0.41 16 44 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -31.78 382.65 -9.06 -40.84 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -6.27 Total: 13.69 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -0.72 Total: 3.36 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.59 Total: -55.61 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: 0.16 Total: -23.93 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.37 Total: 0.21 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.78 -9.06 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282343687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.076 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds