Wall clock time and date at job start Tue Mar 31 2020 23:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33807 * 124.52560 * 2 1 4 4 C 1.37469 * 115.10437 * 179.70464 * 3 2 1 5 5 C 1.36648 * 113.29368 * 0.49940 * 4 3 2 6 6 C 1.46591 * 125.45759 * 179.79738 * 5 4 3 7 7 O 1.21701 * 119.99910 * 359.72123 * 6 5 4 8 8 N 1.34771 * 119.99644 * 179.72222 * 6 5 4 9 9 C 1.46505 * 119.99622 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.47196 * 64.99810 * 10 9 8 12 12 C 1.52997 * 109.47504 * 184.99959 * 10 9 8 13 13 N 1.46905 * 109.47150 * 305.00258 * 10 9 8 14 14 C 1.46902 * 110.99582 * 298.95140 * 13 10 9 15 15 C 1.46900 * 111.00052 * 175.00054 * 13 10 9 16 16 C 1.50701 * 109.46959 * 189.99593 * 15 13 10 17 17 O 1.21286 * 120.00205 * 359.97438 * 16 15 13 18 18 N 1.34779 * 119.99829 * 179.97438 * 16 15 13 19 19 C 1.37099 * 119.99889 * 179.97438 * 18 16 15 20 20 H 1.07995 * 120.00048 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99660 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00572 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99576 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47245 * 59.99837 * 23 21 19 25 25 H 1.48503 * 109.46735 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46811 * 299.99775 * 23 21 19 27 27 S 1.70623 * 124.52039 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47227 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46919 * 299.99569 * 1 2 3 30 30 H 1.08998 * 109.47667 * 59.99615 * 1 2 3 31 31 H 1.08001 * 122.44828 * 359.96701 * 3 2 1 32 32 H 1.07997 * 123.35585 * 180.29793 * 4 3 2 33 33 H 0.96996 * 120.00772 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47068 * 299.99729 * 9 8 6 35 35 H 1.09001 * 109.47372 * 59.99816 * 9 8 6 36 36 H 1.09004 * 109.46881 * 300.00361 * 12 10 9 37 37 H 1.09002 * 109.47016 * 59.99741 * 12 10 9 38 38 H 1.09000 * 109.47400 * 180.02562 * 12 10 9 39 39 H 1.08999 * 109.47144 * 60.00259 * 14 13 10 40 40 H 1.08999 * 109.46960 * 180.02562 * 14 13 10 41 41 H 1.09005 * 109.46988 * 299.99976 * 14 13 10 42 42 H 1.09005 * 109.47080 * 309.99637 * 15 13 10 43 43 H 1.08999 * 109.47125 * 69.99595 * 15 13 10 44 44 H 0.96998 * 119.99918 * 0.02562 * 18 16 15 45 45 H 0.96996 * 120.00499 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1024 0.0000 4 6 3.6215 0.8774 0.0064 5 6 3.9492 -0.4492 0.0007 6 6 5.3123 -0.9885 0.0012 7 8 6.2658 -0.2322 0.0019 8 7 5.5095 -2.3217 0.0009 9 6 6.8718 -2.8606 0.0019 10 6 6.8154 -4.3895 0.0019 11 1 6.3687 -4.7367 -0.9298 12 6 8.2325 -4.9522 0.1286 13 7 6.0026 -4.8496 1.1358 14 6 6.5893 -4.4204 2.4124 15 6 5.8274 -6.3077 1.1007 16 6 4.7979 -6.7147 2.1232 17 8 4.2632 -5.8730 2.8136 18 7 4.4715 -8.0140 2.2705 19 6 3.5353 -8.3843 3.2011 20 1 3.0591 -7.6349 3.8159 21 6 3.1991 -9.7239 3.3533 22 7 3.7789 -10.6359 2.6057 23 14 1.9230 -10.2284 4.6209 24 1 0.6299 -9.5668 4.3118 25 1 1.7464 -11.7025 4.5858 26 1 2.3788 -9.8170 5.9730 27 16 2.4739 -1.4058 0.0006 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8429 2.0964 -0.0005 32 1 4.3549 1.6701 0.0119 33 1 4.7495 -2.9244 0.0007 34 1 7.3995 -2.5161 -0.8875 35 1 7.3979 -2.5168 0.8924 36 1 8.8356 -4.6108 -0.7127 37 1 8.6793 -4.6051 1.0603 38 1 8.1924 -6.0415 0.1282 39 1 6.6433 -3.3321 2.4398 40 1 5.9681 -4.7746 3.2350 41 1 7.5921 -4.8366 2.5095 42 1 5.4929 -6.6096 0.1082 43 1 6.7766 -6.7932 1.3276 44 1 4.8994 -8.6871 1.7186 45 1 3.5445 -11.5711 2.7122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282343687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:18 Heat of formation + Delta-G solvation = -57.264743 kcal Electronic energy + Delta-G solvation = -26853.601809 eV Core-core repulsion = 22996.961709 eV Total energy + Delta-G solvation = -3856.640100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.03710 -40.36258 -38.99209 -38.45313 -35.96632 -35.31891 -33.24457 -33.06294 -32.03214 -29.38236 -28.81503 -27.00476 -26.84320 -25.34177 -24.38900 -22.35157 -21.46269 -20.74918 -20.02586 -19.76806 -18.88077 -17.99317 -17.33777 -17.02799 -16.75775 -16.56615 -16.28264 -16.05199 -15.81841 -15.72032 -15.06198 -14.90428 -14.79486 -14.58097 -14.20185 -13.99119 -13.91270 -13.65561 -13.44595 -13.32590 -13.07367 -12.95939 -12.86186 -12.80201 -12.69175 -12.43559 -12.38197 -12.26519 -12.11423 -11.83924 -11.75533 -11.40752 -11.22319 -10.23679 -10.20576 -9.95564 -9.61166 -9.54724 -9.18022 -8.43185 -5.90989 -0.49870 0.47935 0.91891 1.38635 1.41104 1.42979 1.53223 2.10060 2.11444 2.19078 2.30430 2.76920 3.24371 3.46594 3.69620 3.81620 3.90395 4.06384 4.26176 4.27681 4.29173 4.35953 4.39955 4.55670 4.57275 4.61120 4.66674 4.67859 4.73749 4.74210 4.85448 5.00836 5.06360 5.08848 5.18699 5.19410 5.28903 5.38312 5.43320 5.44414 5.89267 6.07993 6.19554 6.43657 6.65406 7.07697 7.17627 7.62248 8.18420 8.74030 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.002973 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.941447 B = 9414.962981 C =11664.601023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.190 4.190 3 C -0.166 4.166 4 C -0.052 4.052 5 C -0.303 4.303 6 C 0.587 3.413 7 O -0.577 6.577 8 N -0.707 5.707 9 C 0.132 3.868 10 C 0.069 3.931 11 H 0.106 0.894 12 C -0.181 4.181 13 N -0.525 5.525 14 C 0.026 3.974 15 C 0.058 3.942 16 C 0.443 3.557 17 O -0.611 6.611 18 N -0.576 5.576 19 C -0.329 4.329 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.922 5.922 23 Si 0.988 3.012 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.274 1.274 27 S 0.210 5.790 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.170 0.830 32 H 0.153 0.847 33 H 0.410 0.590 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.395 0.605 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.377 16.528 -10.196 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.310 4.310 3 C -0.196 4.196 4 C -0.087 4.087 5 C -0.423 4.423 6 C 0.374 3.626 7 O -0.460 6.460 8 N -0.357 5.357 9 C 0.008 3.992 10 C -0.039 4.039 11 H 0.124 0.876 12 C -0.240 4.240 13 N -0.249 5.249 14 C -0.122 4.122 15 C -0.073 4.073 16 C 0.230 3.770 17 O -0.497 6.497 18 N -0.214 5.214 19 C -0.459 4.459 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.563 5.563 23 Si 0.812 3.188 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.199 1.199 27 S 0.478 5.522 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.187 0.813 32 H 0.170 0.830 33 H 0.246 0.754 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.131 0.869 43 H 0.088 0.912 44 H 0.229 0.771 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.099 16.012 -9.787 18.766 hybrid contribution 0.503 0.102 0.660 0.836 sum 0.404 16.115 -9.127 18.524 Atomic orbital electron populations 1.20544 0.85306 1.03983 1.04789 1.24743 1.03026 0.97204 1.06007 1.20136 0.91741 1.00854 1.06821 1.20944 0.97200 0.94711 0.95802 1.24560 0.96929 0.99031 1.21829 1.17205 0.87159 0.82453 0.75758 1.90764 1.43089 1.58978 1.53169 1.45769 1.10461 1.05743 1.73687 1.21512 0.82704 0.92466 1.02507 1.22109 0.93682 0.93226 0.94896 0.87641 1.22358 0.96206 1.01956 1.03484 1.61740 1.49310 1.10763 1.03072 1.22397 0.97398 1.00384 0.92029 1.21747 0.97160 0.89114 0.99299 1.20785 0.86710 0.82278 0.87223 1.90475 1.57870 1.51075 1.50300 1.41923 1.37590 1.06752 1.35086 1.19595 1.18010 0.92786 1.15502 0.90333 1.25965 1.00220 0.95036 0.99974 1.69658 1.43886 1.02083 1.40676 0.85056 0.78260 0.77301 0.78146 1.19658 1.19696 1.19901 1.83477 0.93744 1.07685 1.67318 0.91003 0.88878 0.88336 0.81256 0.82963 0.75404 0.89628 0.92118 0.89685 0.92275 0.91379 0.91802 0.92599 0.94413 0.86936 0.91204 0.77105 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 10.33 71.24 0.74 -0.32 16 2 C -0.19 -3.47 6.28 24.68 0.15 -3.32 16 3 C -0.17 -2.99 9.99 21.08 0.21 -2.78 16 4 C -0.05 -1.20 10.01 21.72 0.22 -0.98 16 5 C -0.30 -7.97 6.45 24.08 0.16 -7.81 16 6 C 0.59 17.51 7.78 86.42 0.67 18.18 16 7 O -0.58 -20.31 16.84 -4.35 -0.07 -20.38 16 8 N -0.71 -18.70 5.38 -467.16 -2.52 -21.21 16 9 C 0.13 3.04 4.69 86.38 0.40 3.44 16 10 C 0.07 1.46 2.50 44.91 0.11 1.58 16 11 H 0.11 1.95 8.03 -2.39 -0.02 1.93 16 12 C -0.18 -3.16 8.50 71.98 0.61 -2.55 16 13 N -0.52 -15.26 3.93 -901.59 -3.54 -18.80 16 14 C 0.03 0.81 8.46 127.69 1.08 1.89 16 15 C 0.06 1.82 4.89 85.56 0.42 2.24 16 16 C 0.44 19.98 7.47 87.66 0.66 20.63 16 17 O -0.61 -32.16 13.91 -3.05 -0.04 -32.20 16 18 N -0.58 -28.50 5.29 -306.99 -1.62 -30.13 16 19 C -0.33 -18.26 9.68 84.04 0.81 -17.45 16 20 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 22 N -0.92 -49.00 13.05 21.66 0.28 -48.72 16 23 Si 0.99 42.36 29.55 68.60 2.03 44.39 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 S 0.21 4.75 22.08 -56.49 -1.25 3.50 16 28 H 0.07 0.88 8.11 -2.39 -0.02 0.86 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.41 10.86 7.25 -92.71 -0.67 10.19 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 1.54 6.70 -2.39 -0.02 1.52 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.11 6.39 -2.39 -0.02 1.09 16 38 H 0.07 1.19 6.75 -2.39 -0.02 1.17 16 39 H 0.06 1.93 6.44 -2.39 -0.02 1.91 16 40 H 0.06 2.23 5.82 -2.39 -0.01 2.21 16 41 H 0.04 1.03 6.28 -2.38 -0.01 1.02 16 42 H 0.11 3.04 8.00 -2.38 -0.02 3.02 16 43 H 0.07 1.98 6.94 -2.39 -0.02 1.96 16 44 H 0.40 18.61 7.90 -92.71 -0.73 17.88 16 45 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -70.25 382.65 -0.39 -70.64 By element: Atomic # 1 Polarization: 40.71 SS G_CDS: -0.37 Total: 40.34 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 6.71 Total: 12.58 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -7.40 Total: -118.87 kcal Atomic # 8 Polarization: -52.47 SS G_CDS: -0.12 Total: -52.58 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.25 Total: 3.50 kcal Total: -70.25 -0.39 -70.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282343687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.377 kcal (2) G-P(sol) polarization free energy of solvation -70.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds