Wall clock time and date at job start Tue Mar 31 2020 22:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99449 * 2 1 4 4 H 1.48507 * 109.46810 * 239.99570 * 3 2 1 5 5 H 1.48495 * 109.47252 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47211 * 120.00119 * 3 2 1 7 7 C 1.38807 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00118 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00271 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47702 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47420 * 179.97438 * 11 10 9 13 13 O 1.42897 * 109.46996 * 179.97438 * 12 11 10 14 14 C 1.42901 * 113.99811 * 179.97438 * 13 12 11 15 15 C 1.53039 * 109.45890 * 149.99920 * 14 13 12 16 16 C 1.53193 * 109.31085 * 181.38652 * 15 14 13 17 17 N 1.46920 * 108.77778 * 305.36541 * 16 15 14 18 18 C 1.34777 * 120.63614 * 233.58575 * 17 16 15 19 19 O 1.21684 * 120.00556 * 183.60421 * 18 17 16 20 20 C 1.46686 * 119.99675 * 3.60379 * 18 17 16 21 21 C 1.35659 * 126.13219 * 136.21737 * 20 18 17 22 22 N 1.30938 * 114.19282 * 179.73766 * 21 20 18 23 23 C 1.29429 * 117.36668 * 359.97438 * 22 21 20 24 24 S 1.70954 * 110.39078 * 0.02562 * 23 22 21 25 25 C 1.46924 * 118.73916 * 53.86461 * 17 16 15 26 26 C 1.53041 * 109.46357 * 270.07046 * 14 13 12 27 27 H 0.96996 * 119.99924 * 0.02562 * 1 2 3 28 28 H 0.97007 * 120.00455 * 359.97438 * 9 7 2 29 29 H 1.09006 * 109.47191 * 59.99282 * 10 9 7 30 30 H 1.09000 * 109.47059 * 300.00322 * 10 9 7 31 31 H 1.08993 * 109.46842 * 59.99623 * 11 10 9 32 32 H 1.09001 * 109.46824 * 299.99897 * 11 10 9 33 33 H 1.08998 * 109.46986 * 59.99799 * 12 11 10 34 34 H 1.08998 * 109.46800 * 300.00243 * 12 11 10 35 35 H 1.09007 * 109.46141 * 30.02959 * 14 13 12 36 36 H 1.09000 * 109.49837 * 61.44008 * 15 14 13 37 37 H 1.08999 * 109.52476 * 301.35265 * 15 14 13 38 38 H 1.09007 * 109.58480 * 185.57788 * 16 15 14 39 39 H 1.08997 * 109.70346 * 65.22487 * 16 15 14 40 40 H 1.08003 * 122.90214 * 359.76974 * 21 20 18 41 41 H 1.08002 * 124.80565 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.58753 * 65.92302 * 25 17 16 43 43 H 1.09001 * 109.59227 * 186.34950 * 25 17 16 44 44 H 1.08999 * 109.49487 * 298.56740 * 26 14 13 45 45 H 1.09007 * 109.49603 * 58.66254 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0641 -4.8197 0.0021 12 6 1.8292 -6.1447 0.0026 13 8 0.9006 -7.2308 0.0036 14 6 1.5152 -8.5209 0.0036 15 6 0.6069 -9.5184 0.7260 16 6 1.2844 -10.8921 0.7544 17 7 1.6304 -11.2773 -0.6206 18 6 1.2266 -12.4602 -1.1247 19 8 1.5745 -12.7964 -2.2413 20 6 0.3678 -13.3424 -0.3274 21 6 -0.7214 -14.0163 -0.7745 22 7 -1.3147 -14.7434 0.1386 23 6 -0.8063 -14.7350 1.3288 24 16 0.5707 -13.7232 1.3812 25 6 2.4302 -10.3510 -1.4336 26 6 1.7352 -8.9810 -1.4394 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3881 0.0005 29 1 2.6844 -3.7140 0.8921 30 1 2.6856 -3.7148 -0.8878 31 1 0.4378 -4.7626 -0.8881 32 1 0.4372 -4.7614 0.8918 33 1 2.4558 -6.2020 0.8926 34 1 2.4559 -6.2027 -0.8873 35 1 2.4751 -8.4659 0.5172 36 1 -0.3441 -9.5927 0.1985 37 1 0.4312 -9.1783 1.7466 38 1 0.6012 -11.6278 1.1790 39 1 2.1900 -10.8428 1.3589 40 1 -1.0687 -13.9585 -1.7955 41 1 -1.1972 -15.2881 2.1701 42 1 3.4277 -10.2560 -1.0045 43 1 2.5035 -10.7295 -2.4532 44 1 0.7736 -9.0602 -1.9465 45 1 2.3632 -8.2579 -1.9600 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282580821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:00 Heat of formation + Delta-G solvation = -20.216931 kcal Electronic energy + Delta-G solvation = -26045.475364 eV Core-core repulsion = 22190.441777 eV Total energy + Delta-G solvation = -3855.033587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.95697 -39.92887 -38.68867 -36.86768 -35.15156 -32.98143 -32.23207 -31.66318 -30.72777 -29.56065 -26.85259 -25.59764 -24.66155 -23.97728 -22.50364 -22.27644 -21.08252 -20.69890 -19.97700 -18.96762 -17.39638 -17.02842 -16.98258 -16.62986 -15.94142 -15.74837 -15.50106 -14.93344 -14.78080 -14.62677 -14.57125 -14.50831 -14.00381 -13.80746 -13.38053 -13.31772 -13.11454 -12.86979 -12.71174 -12.36488 -12.14222 -11.74886 -11.53342 -11.28952 -11.06824 -10.86688 -10.75712 -10.73044 -10.64461 -10.55508 -10.26787 -10.08998 -9.93702 -9.71374 -9.62474 -9.49076 -9.24521 -8.87409 -6.93164 -5.76247 -3.05648 -0.25162 0.52597 0.95021 1.97973 2.27879 2.57965 3.44162 3.45325 3.48994 3.50484 3.67305 3.95716 4.20539 4.45665 4.52906 4.57880 4.60042 4.72595 4.75056 4.76732 4.96922 4.99116 5.06677 5.23195 5.28843 5.33875 5.44217 5.48492 5.54460 5.56724 5.58877 5.72283 5.85797 5.96799 5.98733 6.08043 6.26264 6.35393 6.71528 6.81332 6.85407 7.02047 7.21758 7.51304 7.68798 8.42469 9.53287 10.11139 10.45924 11.46581 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030851 B = 0.001600 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.356932 B =17491.456489 C =17844.365207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.157 3.843 11 C -0.125 4.125 12 C 0.068 3.932 13 O -0.379 6.379 14 C 0.091 3.909 15 C -0.130 4.130 16 C 0.098 3.902 17 N -0.604 5.604 18 C 0.598 3.402 19 O -0.521 6.521 20 C -0.288 4.288 21 C 0.110 3.890 22 N -0.473 5.473 23 C 0.023 3.977 24 S 0.182 5.818 25 C 0.116 3.884 26 C -0.158 4.158 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.186 0.814 41 H 0.206 0.794 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 -33.148 4.568 33.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.163 4.163 12 C -0.009 4.009 13 O -0.298 6.298 14 C 0.032 3.968 15 C -0.169 4.169 16 C -0.025 4.025 17 N -0.337 5.337 18 C 0.384 3.616 19 O -0.398 6.398 20 C -0.412 4.412 21 C -0.047 4.047 22 N -0.186 5.186 23 C -0.272 4.272 24 S 0.436 5.564 25 C -0.005 4.005 26 C -0.196 4.196 27 H 0.066 0.934 28 H 0.218 0.782 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.203 0.797 41 H 0.223 0.777 42 H 0.093 0.907 43 H 0.118 0.882 44 H 0.097 0.903 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.565 -33.250 4.711 33.680 hybrid contribution 0.031 0.959 -0.723 1.201 sum 2.596 -32.291 3.988 32.640 Atomic orbital electron populations 1.69659 1.05128 1.25814 1.57569 1.24767 0.95560 0.97759 1.02950 0.86237 0.78492 0.83417 0.77842 1.21245 1.21641 1.21247 1.19189 0.91025 0.84144 1.42975 0.91188 1.42331 1.05957 0.99896 1.89543 1.20511 0.93304 0.85484 0.97806 1.21669 0.99425 0.91828 1.03329 1.22544 0.91878 0.86574 0.99895 1.87949 1.33847 1.13064 1.94968 1.21971 0.96018 0.84073 0.94707 1.21959 0.99767 0.92698 1.02435 1.22139 1.00944 0.97044 0.82420 1.48020 1.53353 1.17503 1.14853 1.16784 0.79070 0.80451 0.85289 1.90865 1.55944 1.73674 1.19299 1.25726 1.05993 1.11279 0.98215 1.22186 0.90847 0.91211 1.00422 1.66268 1.31290 1.20662 1.00336 1.28960 0.97371 1.01799 0.99060 1.84138 1.28912 1.38657 1.04653 1.21768 0.93466 0.88043 0.97267 1.22546 1.02611 0.96151 0.98330 0.93419 0.78176 0.96368 0.96347 0.91184 0.91176 0.93326 0.93364 0.91908 0.90330 0.89341 0.89258 0.90129 0.79710 0.77719 0.90730 0.88229 0.90346 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -19.05 5.60 -59.91 -0.34 -19.38 16 10 C 0.16 3.17 6.26 -4.04 -0.03 3.14 16 11 C -0.12 -2.07 5.70 -26.73 -0.15 -2.23 16 12 C 0.07 0.89 5.75 37.16 0.21 1.10 16 13 O -0.38 -4.83 9.99 -35.23 -0.35 -5.19 16 14 C 0.09 0.83 2.57 -26.69 -0.07 0.76 16 15 C -0.13 -0.98 5.73 -26.61 -0.15 -1.14 16 16 C 0.10 0.60 5.91 -3.71 -0.02 0.57 16 17 N -0.60 -4.93 2.97 -174.04 -0.52 -5.44 16 18 C 0.60 5.96 7.57 -12.85 -0.10 5.87 16 19 O -0.52 -6.90 16.51 5.20 0.09 -6.82 16 20 C -0.29 -2.33 5.53 -37.10 -0.21 -2.54 16 21 C 0.11 0.91 11.30 -18.86 -0.21 0.70 16 22 N -0.47 -3.80 10.51 -15.38 -0.16 -3.96 16 23 C 0.02 0.12 12.22 51.75 0.63 0.75 16 24 S 0.18 0.88 20.03 -107.50 -2.15 -1.28 16 25 C 0.12 0.92 6.45 -3.48 -0.02 0.89 16 26 C -0.16 -1.37 5.71 -26.38 -0.15 -1.52 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.38 10.50 7.67 -40.82 -0.31 10.18 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.05 0.58 7.84 -51.93 -0.41 0.18 16 35 H 0.06 0.50 7.79 -51.93 -0.40 0.10 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.47 3.96 -29.88 -0.12 0.35 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.19 1.38 8.06 -52.48 -0.42 0.96 16 41 H 0.21 0.30 8.06 -52.49 -0.42 -0.12 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.10 0.89 7.02 -51.93 -0.36 0.52 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -35.02 381.46 -9.12 -44.15 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.63 Total: 3.75 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -0.51 Total: -1.20 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.29 Total: -56.65 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.27 Total: -12.00 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.15 Total: -1.28 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.02 -9.12 -44.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282580821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.931 kcal (2) G-P(sol) polarization free energy of solvation -35.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds