Wall clock time and date at job start Tue Mar 31 2020 22:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99449 * 2 1 4 4 H 1.48507 * 109.46810 * 239.99570 * 3 2 1 5 5 H 1.48495 * 109.47252 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47211 * 120.00119 * 3 2 1 7 7 C 1.38807 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00118 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00271 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47702 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47420 * 179.97438 * 11 10 9 13 13 O 1.42897 * 109.46996 * 179.97438 * 12 11 10 14 14 C 1.42901 * 113.99811 * 179.97438 * 13 12 11 15 15 C 1.53039 * 109.45890 * 149.99920 * 14 13 12 16 16 C 1.53193 * 109.31085 * 181.38652 * 15 14 13 17 17 N 1.46920 * 108.77778 * 305.36541 * 16 15 14 18 18 C 1.34777 * 120.63614 * 233.58575 * 17 16 15 19 19 O 1.21684 * 120.00556 * 183.60421 * 18 17 16 20 20 C 1.46686 * 119.99675 * 3.60379 * 18 17 16 21 21 C 1.35659 * 126.13219 * 136.21737 * 20 18 17 22 22 N 1.30938 * 114.19282 * 179.73766 * 21 20 18 23 23 C 1.29429 * 117.36668 * 359.97438 * 22 21 20 24 24 S 1.70954 * 110.39078 * 0.02562 * 23 22 21 25 25 C 1.46924 * 118.73916 * 53.86461 * 17 16 15 26 26 C 1.53041 * 109.46357 * 270.07046 * 14 13 12 27 27 H 0.96996 * 119.99924 * 0.02562 * 1 2 3 28 28 H 0.97007 * 120.00455 * 359.97438 * 9 7 2 29 29 H 1.09006 * 109.47191 * 59.99282 * 10 9 7 30 30 H 1.09000 * 109.47059 * 300.00322 * 10 9 7 31 31 H 1.08993 * 109.46842 * 59.99623 * 11 10 9 32 32 H 1.09001 * 109.46824 * 299.99897 * 11 10 9 33 33 H 1.08998 * 109.46986 * 59.99799 * 12 11 10 34 34 H 1.08998 * 109.46800 * 300.00243 * 12 11 10 35 35 H 1.09007 * 109.46141 * 30.02959 * 14 13 12 36 36 H 1.09000 * 109.49837 * 61.44008 * 15 14 13 37 37 H 1.08999 * 109.52476 * 301.35265 * 15 14 13 38 38 H 1.09007 * 109.58480 * 185.57788 * 16 15 14 39 39 H 1.08997 * 109.70346 * 65.22487 * 16 15 14 40 40 H 1.08003 * 122.90214 * 359.76974 * 21 20 18 41 41 H 1.08002 * 124.80565 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.58753 * 65.92302 * 25 17 16 43 43 H 1.09001 * 109.59227 * 186.34950 * 25 17 16 44 44 H 1.08999 * 109.49487 * 298.56740 * 26 14 13 45 45 H 1.09007 * 109.49603 * 58.66254 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0641 -4.8197 0.0021 12 6 1.8292 -6.1447 0.0026 13 8 0.9006 -7.2308 0.0036 14 6 1.5152 -8.5209 0.0036 15 6 0.6069 -9.5184 0.7260 16 6 1.2844 -10.8921 0.7544 17 7 1.6304 -11.2773 -0.6206 18 6 1.2266 -12.4602 -1.1247 19 8 1.5745 -12.7964 -2.2413 20 6 0.3678 -13.3424 -0.3274 21 6 -0.7214 -14.0163 -0.7745 22 7 -1.3147 -14.7434 0.1386 23 6 -0.8063 -14.7350 1.3288 24 16 0.5707 -13.7232 1.3812 25 6 2.4302 -10.3510 -1.4336 26 6 1.7352 -8.9810 -1.4394 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3881 0.0005 29 1 2.6844 -3.7140 0.8921 30 1 2.6856 -3.7148 -0.8878 31 1 0.4378 -4.7626 -0.8881 32 1 0.4372 -4.7614 0.8918 33 1 2.4558 -6.2020 0.8926 34 1 2.4559 -6.2027 -0.8873 35 1 2.4751 -8.4659 0.5172 36 1 -0.3441 -9.5927 0.1985 37 1 0.4312 -9.1783 1.7466 38 1 0.6012 -11.6278 1.1790 39 1 2.1900 -10.8428 1.3589 40 1 -1.0687 -13.9585 -1.7955 41 1 -1.1972 -15.2881 2.1701 42 1 3.4277 -10.2560 -1.0045 43 1 2.5035 -10.7295 -2.4532 44 1 0.7736 -9.0602 -1.9465 45 1 2.3632 -8.2579 -1.9600 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282580821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:59 Heat of formation + Delta-G solvation = -44.732712 kcal Electronic energy + Delta-G solvation = -26046.538448 eV Core-core repulsion = 22190.441777 eV Total energy + Delta-G solvation = -3856.096671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.61239 -40.50314 -39.53133 -37.78905 -36.82724 -34.34278 -33.31268 -32.53289 -31.42593 -31.11943 -27.46532 -26.93909 -25.65668 -24.68756 -24.11389 -22.94153 -22.38734 -21.46634 -20.52179 -19.58077 -19.12394 -18.07115 -17.64856 -17.49077 -16.86573 -16.59191 -16.52286 -16.05089 -15.75361 -15.53293 -15.26310 -15.24855 -15.03847 -14.98608 -14.87714 -14.44679 -14.07370 -13.84263 -13.56718 -13.30945 -12.96086 -12.82975 -12.66543 -12.47702 -12.44230 -12.34975 -12.16556 -12.07651 -11.79740 -11.71514 -11.62058 -11.40395 -10.93487 -10.77378 -10.54906 -10.37891 -10.04185 -9.87325 -9.02872 -7.96001 -5.26330 -0.74482 0.05650 0.49896 1.36833 1.47703 1.51522 1.57762 1.66147 1.95699 2.50365 2.65385 3.19671 3.37446 3.43813 3.61814 3.78292 3.88096 3.95045 4.08743 4.10933 4.12420 4.20119 4.27162 4.29782 4.35837 4.38654 4.52733 4.56954 4.68247 4.69454 4.75789 4.78863 4.82816 4.90532 4.95535 5.08951 5.18499 5.31952 5.33403 5.34995 5.48335 6.06574 6.25199 6.32953 6.54237 6.81297 7.31557 8.07066 8.29933 9.27584 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030851 B = 0.001600 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.356932 B =17491.456489 C =17844.365207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.979 3.021 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.251 4.251 8 H 0.079 0.921 9 N -0.750 5.750 10 C 0.155 3.845 11 C -0.114 4.114 12 C 0.077 3.923 13 O -0.400 6.400 14 C 0.085 3.915 15 C -0.127 4.127 16 C 0.100 3.900 17 N -0.602 5.602 18 C 0.595 3.405 19 O -0.566 6.566 20 C -0.319 4.319 21 C 0.101 3.899 22 N -0.505 5.505 23 C 0.029 3.971 24 S 0.245 5.755 25 C 0.118 3.882 26 C -0.152 4.152 27 H 0.252 0.748 28 H 0.373 0.627 29 H 0.028 0.972 30 H 0.025 0.975 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.178 0.822 41 H 0.242 0.758 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.056 0.944 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.998 -34.076 6.681 34.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.807 3.193 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.383 4.383 8 H 0.097 0.903 9 N -0.393 5.393 10 C 0.029 3.971 11 C -0.152 4.152 12 C 0.000 4.000 13 O -0.320 6.320 14 C 0.028 3.972 15 C -0.165 4.165 16 C -0.023 4.023 17 N -0.334 5.334 18 C 0.382 3.618 19 O -0.447 6.447 20 C -0.443 4.443 21 C -0.056 4.056 22 N -0.219 5.219 23 C -0.265 4.265 24 S 0.500 5.500 25 C -0.003 4.003 26 C -0.191 4.191 27 H 0.061 0.939 28 H 0.204 0.796 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.195 0.805 41 H 0.258 0.742 42 H 0.117 0.883 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.371 -34.202 6.860 35.156 hybrid contribution -0.521 1.155 -1.316 1.827 sum 3.850 -33.046 5.544 33.728 Atomic orbital electron populations 1.69830 1.06766 1.26286 1.59288 1.25667 0.96477 1.01426 1.03483 0.85134 0.77140 0.78685 0.78320 1.20261 1.22141 1.20092 1.19652 0.91678 0.85281 1.41647 0.90277 1.42603 1.05720 1.01393 1.89591 1.20673 0.93826 0.84433 0.98191 1.21480 0.98628 0.92907 1.02181 1.22357 0.91298 0.84963 1.01346 1.87916 1.34631 1.14255 1.95159 1.22213 0.97223 0.82674 0.95104 1.21940 0.98791 0.93111 1.02650 1.22313 1.02291 0.96196 0.81497 1.48131 1.52705 1.16881 1.15661 1.17064 0.78810 0.80992 0.84891 1.90829 1.57809 1.74803 1.21242 1.25652 1.06103 1.11842 1.00692 1.22204 0.91260 0.91502 1.00639 1.66308 1.32433 1.21756 1.01398 1.29626 0.96951 1.00899 0.98998 1.83817 1.27689 1.37398 1.01075 1.21767 0.94417 0.87247 0.96910 1.22472 1.01662 0.96743 0.98206 0.93932 0.79555 0.95374 0.95694 0.92608 0.92108 0.91494 0.92205 0.89686 0.92138 0.88057 0.88440 0.87334 0.80475 0.74179 0.88341 0.89784 0.92499 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.34 13.06 21.65 0.28 -60.06 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.75 -39.11 5.60 -343.46 -1.92 -41.03 16 10 C 0.16 6.12 6.26 86.38 0.54 6.66 16 11 C -0.11 -3.72 5.70 30.59 0.17 -3.54 16 12 C 0.08 1.85 5.75 71.98 0.41 2.26 16 13 O -0.40 -9.59 9.99 -148.98 -1.49 -11.08 16 14 C 0.09 1.39 2.57 30.62 0.08 1.46 16 15 C -0.13 -1.67 5.73 30.67 0.18 -1.49 16 16 C 0.10 0.96 5.91 86.36 0.51 1.47 16 17 N -0.60 -9.20 2.97 -822.77 -2.44 -11.64 16 18 C 0.60 11.97 7.57 86.45 0.65 12.63 16 19 O -0.57 -15.80 16.51 -4.30 -0.07 -15.87 16 20 C -0.32 -5.04 5.53 23.88 0.13 -4.91 16 21 C 0.10 1.73 11.30 84.23 0.95 2.68 16 22 N -0.51 -7.75 10.51 -202.57 -2.13 -9.88 16 23 C 0.03 0.22 12.22 130.60 1.60 1.82 16 24 S 0.25 1.74 20.03 -56.49 -1.13 0.61 16 25 C 0.12 1.75 6.45 86.51 0.56 2.31 16 26 C -0.15 -2.52 5.71 30.82 0.18 -2.34 16 27 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 28 H 0.37 20.79 7.67 -92.70 -0.71 20.08 16 29 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 34 H 0.06 1.30 7.84 -2.39 -0.02 1.28 16 35 H 0.09 1.04 7.79 -2.38 -0.02 1.02 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.10 0.78 3.96 -16.40 -0.06 0.71 16 39 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 41 H 0.24 -0.18 8.06 -2.91 -0.02 -0.20 16 42 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.54 7.02 -2.39 -0.02 1.53 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.09 1.37 7.84 -2.38 -0.02 1.35 16 Total: -1.00 -77.20 381.46 0.63 -76.57 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.24 Total: 22.66 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 7.27 Total: 1.55 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -6.21 Total: -122.62 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -1.56 Total: -26.95 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -1.13 Total: 0.61 kcal Total: -77.20 0.63 -76.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282580821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.837 kcal (2) G-P(sol) polarization free energy of solvation -77.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds