Wall clock time and date at job start Tue Mar 31 2020 22:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48500 * 109.47288 * 240.00828 * 3 2 1 5 5 H 1.48499 * 109.47095 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47108 * 120.00426 * 3 2 1 7 7 C 1.38813 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99735 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99747 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46692 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46976 * 179.97438 * 11 10 9 13 13 O 1.42897 * 109.47355 * 180.02562 * 12 11 10 14 14 C 1.42901 * 114.00234 * 179.97438 * 13 12 11 15 15 C 1.53041 * 109.46114 * 209.99913 * 14 13 12 16 16 C 1.53189 * 109.31206 * 178.63203 * 15 14 13 17 17 N 1.46924 * 108.77676 * 54.63668 * 16 15 14 18 18 C 1.34777 * 120.62882 * 126.37120 * 17 16 15 19 19 O 1.21633 * 119.99926 * 1.45656 * 18 17 16 20 20 C 1.47263 * 119.99756 * 181.18281 * 18 17 16 21 21 C 1.35210 * 123.14252 * 171.64978 * 20 18 17 22 22 S 1.70937 * 108.82657 * 179.97438 * 21 20 18 23 23 C 1.70775 * 91.13228 * 359.97438 * 22 21 20 24 24 N 1.28647 * 110.55782 * 359.75153 * 23 22 21 25 25 C 1.46925 * 118.73820 * 306.64288 * 17 16 15 26 26 C 1.52759 * 109.00600 * 53.31072 * 25 17 16 27 27 H 0.97002 * 119.99937 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99429 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47394 * 60.00320 * 10 9 7 30 30 H 1.08993 * 109.47399 * 299.99432 * 10 9 7 31 31 H 1.09005 * 109.47171 * 60.00236 * 11 10 9 32 32 H 1.08998 * 109.47217 * 300.00445 * 11 10 9 33 33 H 1.08997 * 109.47222 * 60.00300 * 12 11 10 34 34 H 1.09004 * 109.47136 * 300.00321 * 12 11 10 35 35 H 1.09000 * 109.46061 * 329.97343 * 14 13 12 36 36 H 1.09000 * 109.49674 * 58.67827 * 15 14 13 37 37 H 1.09005 * 109.50090 * 298.58761 * 15 14 13 38 38 H 1.09003 * 109.58716 * 294.84806 * 16 15 14 39 39 H 1.09006 * 109.70129 * 174.49342 * 16 15 14 40 40 H 1.07997 * 125.58461 * 359.97246 * 21 20 18 41 41 H 1.07996 * 124.72059 * 179.97438 * 23 22 21 42 42 H 1.08992 * 109.58743 * 173.14577 * 25 17 16 43 43 H 1.09002 * 109.58534 * 293.56900 * 25 17 16 44 44 H 1.09002 * 109.55909 * 185.55476 * 26 25 17 45 45 H 1.08992 * 109.36286 * 65.50240 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0640 -4.8197 0.0001 12 6 1.8290 -6.1447 -0.0005 13 8 0.9005 -7.2309 -0.0005 14 6 1.5151 -8.5210 -0.0017 15 6 0.6057 -9.5183 -0.7231 16 6 1.2830 -10.8921 -0.7524 17 7 1.6305 -11.2774 0.6222 18 6 1.2263 -12.4599 1.1269 19 8 0.5900 -13.2311 0.4342 20 6 1.5603 -12.8208 2.5150 21 6 1.0538 -13.9085 3.1383 22 16 1.6817 -13.9764 4.7267 23 6 2.5842 -12.5500 4.4672 24 7 2.3970 -12.1078 3.2737 25 6 2.4218 -10.3464 1.4382 26 6 1.7365 -8.9812 1.4410 27 1 -0.4850 0.8401 0.0004 28 1 0.3557 -2.3880 -0.0005 29 1 2.6849 -3.7145 0.8894 30 1 2.6848 -3.7145 -0.8905 31 1 0.4370 -4.7622 -0.8897 32 1 0.4376 -4.7618 0.8903 33 1 2.4562 -6.2025 0.8890 34 1 2.4551 -6.2023 -0.8910 35 1 2.4742 -8.4658 -0.5166 36 1 0.4294 -9.1778 -1.7435 37 1 -0.3447 -9.5924 -0.1946 38 1 2.1882 -10.8404 -1.3573 39 1 0.6012 -11.6289 -1.1771 40 1 0.3654 -14.6182 2.7038 41 1 3.2258 -12.0859 5.2015 42 1 2.4893 -10.7219 2.4591 43 1 3.4218 -10.2493 1.0155 44 1 2.3651 -8.2583 1.9610 45 1 0.7755 -9.0603 1.9492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282580828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:53 Heat of formation + Delta-G solvation = -11.827765 kcal Electronic energy + Delta-G solvation = -26188.733449 eV Core-core repulsion = 22334.063644 eV Total energy + Delta-G solvation = -3854.669805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.29730 -39.51991 -38.48591 -36.73081 -35.08867 -32.77419 -31.85146 -31.37623 -31.12621 -29.52594 -26.86487 -25.51808 -24.68030 -23.53490 -22.70210 -22.29135 -21.04421 -20.57980 -19.85276 -18.87141 -17.13889 -16.99458 -16.74229 -16.44256 -16.05518 -15.72333 -15.61440 -14.82495 -14.67494 -14.48565 -14.32688 -14.09459 -13.96485 -13.67775 -13.28281 -13.17552 -13.08052 -12.75656 -12.48215 -12.42584 -12.13693 -11.57032 -11.41388 -11.22838 -10.88479 -10.84908 -10.70404 -10.55894 -10.54535 -10.53924 -10.35774 -10.06328 -9.81359 -9.68244 -9.63464 -9.23179 -8.97864 -8.84774 -6.90255 -5.73710 -3.02908 -0.03713 0.65814 1.00902 1.40739 2.64615 2.88700 3.45889 3.47256 3.49578 3.51206 3.64988 4.25390 4.50720 4.60940 4.63103 4.66176 4.76217 4.82738 4.92473 5.04357 5.08766 5.19592 5.29510 5.32346 5.39620 5.48975 5.59064 5.63215 5.65452 5.71705 5.90917 5.96092 6.00956 6.08659 6.13993 6.31234 6.37115 6.40086 6.74011 6.86324 6.90185 7.05171 7.34137 7.71236 7.74352 8.45075 9.55782 10.14133 10.49011 11.49173 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.001657 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.098152 B =16895.560192 C =17738.498346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.157 3.843 11 C -0.124 4.124 12 C 0.068 3.932 13 O -0.381 6.381 14 C 0.089 3.911 15 C -0.130 4.130 16 C 0.113 3.887 17 N -0.591 5.591 18 C 0.594 3.406 19 O -0.539 6.539 20 C 0.009 3.991 21 C -0.222 4.222 22 S 0.225 5.775 23 C -0.004 4.004 24 N -0.435 5.435 25 C 0.059 3.941 26 C -0.154 4.154 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.191 0.809 41 H 0.209 0.791 42 H 0.162 0.838 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.570 -34.228 9.322 35.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.162 4.162 12 C -0.008 4.008 13 O -0.300 6.300 14 C 0.031 3.969 15 C -0.169 4.169 16 C -0.009 4.009 17 N -0.322 5.322 18 C 0.379 3.621 19 O -0.416 6.416 20 C -0.125 4.125 21 C -0.365 4.365 22 S 0.481 5.519 23 C -0.302 4.302 24 N -0.150 5.150 25 C -0.064 4.064 26 C -0.193 4.193 27 H 0.066 0.934 28 H 0.218 0.782 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.208 0.792 41 H 0.225 0.775 42 H 0.177 0.823 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.346 -34.649 9.621 36.355 hybrid contribution 0.321 1.454 -0.930 1.756 sum 5.668 -33.195 8.691 34.779 Atomic orbital electron populations 1.69661 1.05122 1.25777 1.57635 1.24769 0.95562 0.97750 1.03023 0.86234 0.78480 0.83434 0.77828 1.21258 1.21657 1.21267 1.19196 0.91023 0.84157 1.42865 0.91195 1.42335 1.05965 0.99911 1.89523 1.20511 0.93319 0.85477 0.97786 1.21668 0.99400 0.91884 1.03278 1.22516 0.91900 0.86638 0.99792 1.87938 1.33877 1.13201 1.95013 1.22044 0.95927 0.83848 0.95124 1.21973 0.99651 0.93161 1.02067 1.21681 1.00691 0.96328 0.82246 1.47953 1.52671 1.17283 1.14303 1.17099 0.79104 0.81650 0.84259 1.90814 1.40954 1.50437 1.59434 1.20488 1.00094 0.94875 0.97086 1.26642 1.06951 1.03183 0.99679 1.83057 1.36166 1.23788 1.08927 1.28783 1.04488 0.99070 0.97867 1.66611 1.16078 1.28288 1.04024 1.23159 0.92990 0.88565 1.01668 1.22352 1.02212 0.96857 0.97843 0.93441 0.78177 0.96363 0.96351 0.91215 0.91226 0.93473 0.93446 0.92183 0.89693 0.90621 0.91004 0.88374 0.79178 0.77455 0.82288 0.91850 0.90332 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.92 13.06 55.49 0.72 -28.19 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -19.44 5.60 -59.91 -0.34 -19.77 16 10 C 0.16 3.28 6.26 -4.04 -0.03 3.25 16 11 C -0.12 -2.18 5.70 -26.73 -0.15 -2.34 16 12 C 0.07 0.98 5.75 37.16 0.21 1.19 16 13 O -0.38 -5.48 9.99 -35.23 -0.35 -5.83 16 14 C 0.09 0.99 2.57 -26.69 -0.07 0.93 16 15 C -0.13 -1.34 5.73 -26.61 -0.15 -1.49 16 16 C 0.11 1.08 6.43 -3.71 -0.02 1.06 16 17 N -0.59 -6.14 2.98 -174.36 -0.52 -6.65 16 18 C 0.59 6.82 7.67 -12.59 -0.10 6.72 16 19 O -0.54 -7.48 16.15 5.25 0.08 -7.40 16 20 C 0.01 0.08 6.54 -84.52 -0.55 -0.47 16 21 C -0.22 -1.50 10.62 29.65 0.32 -1.18 16 22 S 0.23 0.77 22.96 -107.50 -2.47 -1.69 16 23 C 0.00 -0.02 12.17 51.43 0.63 0.61 16 24 N -0.44 -3.30 6.66 -12.36 -0.08 -3.38 16 25 C 0.06 0.54 6.18 -3.93 -0.02 0.52 16 26 C -0.15 -1.58 5.68 -26.83 -0.15 -1.73 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.38 10.70 7.67 -40.82 -0.31 10.39 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.05 0.62 7.84 -51.93 -0.41 0.22 16 34 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.06 0.62 7.79 -51.93 -0.40 0.21 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.99 7.01 -51.93 -0.36 0.63 16 40 H 0.19 1.14 8.04 -52.49 -0.42 0.72 16 41 H 0.21 0.18 8.06 -52.49 -0.42 -0.24 16 42 H 0.16 1.42 3.60 -91.11 -0.33 1.09 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.77 7.84 -51.93 -0.41 0.37 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -35.19 380.41 -9.42 -44.61 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.84 Total: 5.44 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -0.34 Total: -0.59 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.21 Total: -58.00 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.27 Total: -13.23 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.47 Total: -1.69 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.19 -9.42 -44.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282580828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.782 kcal (2) G-P(sol) polarization free energy of solvation -35.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds