Wall clock time and date at job start Tue Mar 31 2020 22:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48500 * 109.47288 * 240.00828 * 3 2 1 5 5 H 1.48499 * 109.47095 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47108 * 120.00426 * 3 2 1 7 7 C 1.38813 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99735 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99747 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46692 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46976 * 179.97438 * 11 10 9 13 13 O 1.42897 * 109.47355 * 180.02562 * 12 11 10 14 14 C 1.42901 * 114.00234 * 179.97438 * 13 12 11 15 15 C 1.53041 * 109.46114 * 209.99913 * 14 13 12 16 16 C 1.53189 * 109.31206 * 178.63203 * 15 14 13 17 17 N 1.46924 * 108.77676 * 54.63668 * 16 15 14 18 18 C 1.34777 * 120.62882 * 126.37120 * 17 16 15 19 19 O 1.21633 * 119.99926 * 1.45656 * 18 17 16 20 20 C 1.47263 * 119.99756 * 181.18281 * 18 17 16 21 21 C 1.35210 * 123.14252 * 171.64978 * 20 18 17 22 22 S 1.70937 * 108.82657 * 179.97438 * 21 20 18 23 23 C 1.70775 * 91.13228 * 359.97438 * 22 21 20 24 24 N 1.28647 * 110.55782 * 359.75153 * 23 22 21 25 25 C 1.46925 * 118.73820 * 306.64288 * 17 16 15 26 26 C 1.52759 * 109.00600 * 53.31072 * 25 17 16 27 27 H 0.97002 * 119.99937 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99429 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47394 * 60.00320 * 10 9 7 30 30 H 1.08993 * 109.47399 * 299.99432 * 10 9 7 31 31 H 1.09005 * 109.47171 * 60.00236 * 11 10 9 32 32 H 1.08998 * 109.47217 * 300.00445 * 11 10 9 33 33 H 1.08997 * 109.47222 * 60.00300 * 12 11 10 34 34 H 1.09004 * 109.47136 * 300.00321 * 12 11 10 35 35 H 1.09000 * 109.46061 * 329.97343 * 14 13 12 36 36 H 1.09000 * 109.49674 * 58.67827 * 15 14 13 37 37 H 1.09005 * 109.50090 * 298.58761 * 15 14 13 38 38 H 1.09003 * 109.58716 * 294.84806 * 16 15 14 39 39 H 1.09006 * 109.70129 * 174.49342 * 16 15 14 40 40 H 1.07997 * 125.58461 * 359.97246 * 21 20 18 41 41 H 1.07996 * 124.72059 * 179.97438 * 23 22 21 42 42 H 1.08992 * 109.58743 * 173.14577 * 25 17 16 43 43 H 1.09002 * 109.58534 * 293.56900 * 25 17 16 44 44 H 1.09002 * 109.55909 * 185.55476 * 26 25 17 45 45 H 1.08992 * 109.36286 * 65.50240 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0640 -4.8197 0.0001 12 6 1.8290 -6.1447 -0.0005 13 8 0.9005 -7.2309 -0.0005 14 6 1.5151 -8.5210 -0.0017 15 6 0.6057 -9.5183 -0.7231 16 6 1.2830 -10.8921 -0.7524 17 7 1.6305 -11.2774 0.6222 18 6 1.2263 -12.4599 1.1269 19 8 0.5900 -13.2311 0.4342 20 6 1.5603 -12.8208 2.5150 21 6 1.0538 -13.9085 3.1383 22 16 1.6817 -13.9764 4.7267 23 6 2.5842 -12.5500 4.4672 24 7 2.3970 -12.1078 3.2737 25 6 2.4218 -10.3464 1.4382 26 6 1.7365 -8.9812 1.4410 27 1 -0.4850 0.8401 0.0004 28 1 0.3557 -2.3880 -0.0005 29 1 2.6849 -3.7145 0.8894 30 1 2.6848 -3.7145 -0.8905 31 1 0.4370 -4.7622 -0.8897 32 1 0.4376 -4.7618 0.8903 33 1 2.4562 -6.2025 0.8890 34 1 2.4551 -6.2023 -0.8910 35 1 2.4742 -8.4658 -0.5166 36 1 0.4294 -9.1778 -1.7435 37 1 -0.3447 -9.5924 -0.1946 38 1 2.1882 -10.8404 -1.3573 39 1 0.6012 -11.6289 -1.1771 40 1 0.3654 -14.6182 2.7038 41 1 3.2258 -12.0859 5.2015 42 1 2.4893 -10.7219 2.4591 43 1 3.4218 -10.2493 1.0155 44 1 2.3651 -8.2583 1.9610 45 1 0.7755 -9.0603 1.9492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282580828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:52 Heat of formation + Delta-G solvation = -35.752691 kcal Electronic energy + Delta-G solvation = -26189.770912 eV Core-core repulsion = 22334.063644 eV Total energy + Delta-G solvation = -3855.707268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.94608 -40.23521 -39.39166 -37.77670 -36.81977 -34.31993 -33.09076 -32.23077 -31.67291 -31.24060 -27.55646 -26.87173 -25.75603 -24.42692 -24.12250 -23.19554 -22.44797 -21.46192 -20.42423 -19.51831 -19.12707 -17.95181 -17.49746 -17.26361 -16.90372 -16.68176 -16.58468 -16.29232 -15.73584 -15.42725 -15.28571 -15.21536 -15.09922 -14.82057 -14.53785 -14.37027 -14.04027 -13.76269 -13.41628 -13.31896 -13.03320 -12.84940 -12.77699 -12.47149 -12.45483 -12.30000 -12.11640 -12.07544 -11.87936 -11.74656 -11.51937 -11.33263 -10.94049 -10.78345 -10.63785 -10.12931 -9.95768 -9.73013 -9.03537 -7.96138 -5.26710 -0.48424 0.30528 0.61701 0.84761 1.47330 1.51492 1.57687 1.92900 2.17849 2.50221 2.65153 3.00611 3.37118 3.61030 3.80330 3.85207 3.95263 4.03149 4.08376 4.11785 4.13591 4.26729 4.29340 4.34955 4.36284 4.46005 4.57559 4.62909 4.68653 4.71086 4.74014 4.80282 4.82745 4.91074 5.07381 5.21525 5.24836 5.31783 5.32119 5.47819 5.68556 6.16777 6.24754 6.31577 6.41038 6.95966 7.31101 8.06241 8.29599 9.27491 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.001657 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.098152 B =16895.560192 C =17738.498346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.980 3.020 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.251 4.251 8 H 0.080 0.920 9 N -0.750 5.750 10 C 0.156 3.844 11 C -0.113 4.113 12 C 0.077 3.923 13 O -0.402 6.402 14 C 0.085 3.915 15 C -0.124 4.124 16 C 0.114 3.886 17 N -0.593 5.593 18 C 0.584 3.416 19 O -0.577 6.577 20 C -0.020 4.020 21 C -0.240 4.240 22 S 0.306 5.694 23 C -0.006 4.006 24 N -0.460 5.460 25 C 0.061 3.939 26 C -0.147 4.147 27 H 0.252 0.748 28 H 0.373 0.627 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.189 0.811 41 H 0.243 0.757 42 H 0.169 0.831 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.861 -35.000 10.783 37.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.808 3.192 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.383 4.383 8 H 0.097 0.903 9 N -0.393 5.393 10 C 0.030 3.970 11 C -0.151 4.151 12 C 0.000 4.000 13 O -0.321 6.321 14 C 0.027 3.973 15 C -0.162 4.162 16 C -0.008 4.008 17 N -0.324 5.324 18 C 0.371 3.629 19 O -0.457 6.457 20 C -0.154 4.154 21 C -0.383 4.383 22 S 0.563 5.437 23 C -0.303 4.303 24 N -0.175 5.175 25 C -0.061 4.061 26 C -0.186 4.186 27 H 0.061 0.939 28 H 0.204 0.796 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.207 0.793 41 H 0.259 0.741 42 H 0.185 0.815 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.688 -35.450 11.102 37.934 hybrid contribution -0.386 1.550 -1.283 2.049 sum 7.302 -33.900 9.819 36.040 Atomic orbital electron populations 1.69835 1.06792 1.26302 1.59265 1.25689 0.96499 1.01481 1.03461 0.85115 0.77124 0.78588 0.78334 1.20182 1.22104 1.20113 1.19657 0.91682 0.85250 1.41687 0.90260 1.42601 1.05717 1.01380 1.89600 1.20660 0.93772 0.84390 0.98214 1.21480 0.98642 0.92822 1.02179 1.22356 0.91341 0.85036 1.01238 1.87904 1.34719 1.14287 1.95234 1.22237 0.96531 0.82482 0.96032 1.21912 0.98792 0.93450 1.02088 1.21682 1.01208 0.95448 0.82470 1.48089 1.52431 1.17280 1.14559 1.17565 0.78509 0.81508 0.85301 1.90772 1.42741 1.51539 1.60695 1.20280 1.02197 0.96445 0.96499 1.26879 1.06878 1.02552 1.01957 1.82801 1.33756 1.21880 1.05312 1.29376 1.04190 0.99428 0.97314 1.66460 1.16716 1.29105 1.05230 1.23263 0.92959 0.87534 1.02317 1.22288 1.01575 0.97677 0.97046 0.93919 0.79560 0.95466 0.95542 0.92347 0.92356 0.91960 0.91981 0.90558 0.89067 0.92412 0.89215 0.89363 0.79342 0.74064 0.81548 0.90738 0.89575 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.00 13.06 21.65 0.28 -60.71 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 3 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.25 -14.42 9.99 84.03 0.84 -13.58 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 9 N -0.75 -39.90 5.60 -343.46 -1.92 -41.82 16 10 C 0.16 6.38 6.26 86.38 0.54 6.92 16 11 C -0.11 -3.92 5.70 30.60 0.17 -3.75 16 12 C 0.08 2.07 5.75 71.98 0.41 2.48 16 13 O -0.40 -11.17 9.99 -148.98 -1.49 -12.66 16 14 C 0.08 1.80 2.57 30.62 0.08 1.88 16 15 C -0.12 -2.54 5.73 30.67 0.18 -2.36 16 16 C 0.11 2.19 6.43 86.36 0.56 2.74 16 17 N -0.59 -12.36 2.98 -823.79 -2.45 -14.82 16 18 C 0.58 13.89 7.67 86.62 0.66 14.56 16 19 O -0.58 -16.95 16.15 -4.14 -0.07 -17.01 16 20 C -0.02 -0.36 6.54 40.56 0.27 -0.10 16 21 C -0.24 -3.09 10.62 67.12 0.71 -2.38 16 22 S 0.31 1.32 22.96 -56.49 -1.30 0.02 16 23 C -0.01 -0.04 12.17 130.71 1.59 1.56 16 24 N -0.46 -6.36 6.66 -193.02 -1.28 -7.64 16 25 C 0.06 1.07 6.18 86.22 0.53 1.60 16 26 C -0.15 -2.88 5.68 30.53 0.17 -2.70 16 27 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 28 H 0.37 21.19 7.67 -92.71 -0.71 20.48 16 29 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 2.13 8.14 -2.38 -0.02 2.12 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.06 1.49 7.84 -2.39 -0.02 1.47 16 34 H 0.06 1.50 8.08 -2.38 -0.02 1.48 16 35 H 0.08 1.40 7.79 -2.39 -0.02 1.38 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.88 7.01 -2.38 -0.02 1.86 16 40 H 0.19 2.33 8.04 -2.91 -0.02 2.30 16 41 H 0.24 -0.52 8.06 -2.91 -0.02 -0.54 16 42 H 0.17 2.80 3.60 -79.74 -0.29 2.51 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 44 H 0.09 1.54 7.84 -2.39 -0.02 1.53 16 45 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -76.97 380.41 1.00 -75.97 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.02 Total: 27.33 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 7.18 Total: 2.69 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -5.38 Total: -125.00 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -1.55 Total: -29.67 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -1.30 Total: 0.02 kcal Total: -76.97 1.00 -75.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282580828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.222 kcal (2) G-P(sol) polarization free energy of solvation -76.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds