Wall clock time and date at job start Tue Mar 31 2020 23:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34658 * 125.80685 * 2 1 4 4 H 0.96998 * 124.85005 * 359.94442 * 3 2 1 5 5 C 1.36446 * 110.30193 * 180.20411 * 3 2 1 6 6 C 1.34489 * 108.85535 * 359.61798 * 5 3 2 7 7 C 1.36776 * 125.79848 * 179.97438 * 2 1 3 8 8 C 1.47258 * 126.94488 * 359.97438 * 7 2 1 9 9 O 1.21629 * 119.99903 * 323.76750 * 8 7 2 10 10 N 1.34770 * 120.00297 * 143.75715 * 8 7 2 11 11 C 1.46502 * 119.99865 * 4.55425 * 10 8 7 12 12 C 1.46494 * 120.00378 * 184.54735 * 10 8 7 13 13 C 1.52999 * 109.47169 * 90.00418 * 12 10 8 14 14 N 1.46497 * 109.47547 * 179.97438 * 13 12 10 15 15 C 1.46500 * 120.00262 * 270.00523 * 14 13 12 16 16 C 1.34777 * 119.99714 * 89.99808 * 14 13 12 17 17 O 1.21279 * 120.00491 * 0.02562 * 16 14 13 18 18 C 1.50705 * 120.00024 * 180.02562 * 16 14 13 19 19 S 1.80996 * 109.47251 * 180.02562 * 18 16 14 20 20 C 1.76198 * 99.99947 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00243 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99927 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00051 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99969 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47204 * 60.00004 * 24 22 20 26 26 H 1.48500 * 109.47025 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47191 * 299.99872 * 24 22 20 28 28 H 1.09003 * 109.46635 * 90.02279 * 1 2 3 29 29 H 1.08998 * 109.47501 * 210.02603 * 1 2 3 30 30 H 1.09004 * 109.47020 * 330.02771 * 1 2 3 31 31 H 1.08003 * 125.57415 * 179.77048 * 5 3 2 32 32 H 1.08003 * 126.83375 * 180.13275 * 6 5 3 33 33 H 1.09000 * 109.47306 * 84.81915 * 11 10 8 34 34 H 1.08999 * 109.47199 * 204.82491 * 11 10 8 35 35 H 1.09001 * 109.47037 * 324.82130 * 11 10 8 36 36 H 1.09005 * 109.47343 * 210.00470 * 12 10 8 37 37 H 1.08996 * 109.47280 * 330.00586 * 12 10 8 38 38 H 1.09005 * 109.47030 * 300.00243 * 13 12 10 39 39 H 1.09001 * 109.47344 * 59.99906 * 13 12 10 40 40 H 1.08996 * 109.47714 * 89.99510 * 15 14 13 41 41 H 1.09002 * 109.46932 * 209.99904 * 15 14 13 42 42 H 1.09000 * 109.46984 * 329.99362 * 15 14 13 43 43 H 1.08999 * 109.46957 * 300.00280 * 18 16 14 44 44 H 1.09002 * 109.46848 * 60.00013 * 18 16 14 45 45 H 0.97003 * 120.00091 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0073 -0.0008 5 6 3.6095 0.7273 -0.0046 6 6 3.6882 -0.6153 0.0009 7 6 2.3070 -1.1094 0.0005 8 6 1.8701 -2.5157 0.0017 9 8 0.8786 -2.8439 0.6248 10 7 2.5689 -3.4390 -0.6880 11 6 3.8175 -3.0640 -1.3563 12 6 2.0801 -4.8176 -0.7691 13 6 1.1711 -4.9653 -1.9909 14 7 0.6827 -6.3440 -2.0725 15 6 1.4427 -7.3472 -2.8223 16 6 -0.4657 -6.6896 -1.4576 17 8 -1.0951 -5.8591 -0.8372 18 6 -0.9679 -8.1080 -1.5410 19 16 -2.5201 -8.2536 -0.6215 20 6 -2.8692 -9.9614 -0.8790 21 1 -2.1947 -10.5681 -1.4648 22 6 -4.0118 -10.5266 -0.3298 23 7 -4.8343 -9.7870 0.3838 24 14 -4.3823 -12.3370 -0.6034 25 1 -3.2749 -13.1578 -0.0511 26 1 -5.6506 -12.6918 0.0827 27 1 -4.5156 -12.6006 -2.0587 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5134 31 1 4.4498 1.4059 -0.0091 32 1 4.5890 -1.2111 0.0013 33 1 4.6414 -3.1197 -0.6449 34 1 4.0056 -3.7472 -2.1845 35 1 3.7343 -2.0460 -1.7369 36 1 2.9264 -5.4983 -0.8614 37 1 1.5176 -5.0574 0.1332 38 1 0.3248 -4.2845 -1.8986 39 1 1.7335 -4.7255 -2.8933 40 1 2.1576 -7.8328 -2.1581 41 1 0.7588 -8.0930 -3.2276 42 1 1.9771 -6.8624 -3.6393 43 1 -1.1381 -8.3724 -2.5847 44 1 -0.2263 -8.7818 -1.1118 45 1 -5.6326 -10.1821 0.7679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285353280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:50 Heat of formation + Delta-G solvation = -13.279925 kcal Electronic energy + Delta-G solvation = -26626.347135 eV Core-core repulsion = 22771.614359 eV Total energy + Delta-G solvation = -3854.732775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.52746 -39.67596 -38.93484 -35.97281 -34.96074 -32.37104 -31.87679 -31.76777 -30.43584 -28.44046 -27.11810 -26.67997 -25.92220 -25.41142 -23.70643 -21.54430 -21.03554 -19.13130 -18.63154 -17.86384 -17.60198 -16.62764 -16.40921 -15.99171 -15.85103 -15.22130 -15.05409 -14.75354 -14.56860 -14.08913 -13.96477 -13.63928 -13.45728 -13.25771 -13.13912 -13.02573 -12.80729 -12.79720 -12.67208 -12.49509 -12.38454 -12.29108 -12.05515 -11.80379 -11.74859 -10.99838 -10.98757 -10.90919 -10.70927 -9.82109 -9.75388 -9.25759 -9.04861 -9.00558 -8.97472 -8.43408 -8.26361 -8.14448 -6.42986 -6.15409 -3.85644 1.67866 2.18274 2.67166 2.96137 3.15325 3.22553 3.27296 3.31175 3.32637 3.38453 3.73294 4.25950 4.58045 4.61480 4.78102 4.89494 4.97980 4.98468 5.08419 5.13549 5.17342 5.19149 5.25688 5.36243 5.39781 5.41922 5.51481 5.51820 5.61812 5.63302 5.70416 5.74207 5.94798 5.97346 5.99890 6.07983 6.20101 6.40916 6.50588 6.67529 6.78121 7.15631 7.40112 7.61444 7.64904 8.32216 8.40642 8.67943 9.29229 10.91897 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022237 B = 0.002170 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.880013 B =12901.846450 C =13836.111331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.100 3.900 3 N -0.554 5.554 4 H 0.415 0.585 5 C -0.020 4.020 6 C -0.170 4.170 7 C -0.229 4.229 8 C 0.587 3.413 9 O -0.525 6.525 10 N -0.613 5.613 11 C 0.080 3.920 12 C 0.102 3.898 13 C 0.108 3.892 14 N -0.625 5.625 15 C 0.081 3.919 16 C 0.528 3.472 17 O -0.503 6.503 18 C -0.149 4.149 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.168 0.832 32 H 0.147 0.853 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.525 20.410 -6.948 31.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.018 4.018 3 N -0.150 5.150 4 H 0.251 0.749 5 C -0.148 4.148 6 C -0.194 4.194 7 C -0.239 4.239 8 C 0.376 3.624 9 O -0.401 6.401 10 N -0.347 5.347 11 C -0.063 4.063 12 C -0.022 4.022 13 C -0.017 4.017 14 N -0.362 5.362 15 C -0.062 4.062 16 C 0.316 3.684 17 O -0.375 6.375 18 C -0.299 4.299 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.086 0.914 31 H 0.185 0.815 32 H 0.164 0.836 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.863 21.592 -5.579 30.539 hybrid contribution 0.786 -1.744 -1.028 2.171 sum 21.649 19.849 -6.607 30.105 Atomic orbital electron populations 1.20616 0.87021 1.04905 1.03452 1.20300 0.93687 0.85564 1.02207 1.41582 1.06226 1.08378 1.58769 0.74853 1.21719 0.85679 0.96428 1.10936 1.22146 0.95696 0.93453 1.08119 1.20085 0.93432 0.91971 1.18430 1.17506 0.82467 0.84172 0.78292 1.90865 1.26178 1.80896 1.42184 1.47558 1.24491 1.09745 1.52954 1.21969 0.85442 1.01965 0.96913 1.21844 0.98184 0.81432 1.00746 1.21687 0.98769 0.83849 0.97398 1.47807 1.24277 1.09908 1.54249 1.21774 0.96557 0.92211 0.95669 1.20392 0.79584 0.90353 0.78083 1.90754 1.55570 1.51631 1.39567 1.23553 1.05752 0.95015 1.05621 1.85466 1.18621 1.13124 1.66181 1.22823 1.11601 0.94983 1.38932 0.91030 1.24993 0.95109 0.98940 0.94582 1.70016 1.12311 1.36043 1.31876 0.86233 0.77763 0.83052 0.78489 1.19964 1.20848 1.19975 0.90529 0.87801 0.91437 0.81473 0.83563 0.92851 0.91477 0.90300 0.90715 0.88968 0.89590 0.91100 0.92820 0.90593 0.91526 0.89340 0.89312 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.21 36.00 0.37 -0.63 16 2 C 0.10 1.01 7.17 -81.88 -0.59 0.42 16 3 N -0.55 -3.72 5.90 -9.11 -0.05 -3.77 16 4 H 0.42 1.44 8.96 -40.82 -0.37 1.07 16 5 C -0.02 -0.13 11.89 -16.82 -0.20 -0.33 16 6 C -0.17 -1.42 8.76 -37.50 -0.33 -1.75 16 7 C -0.23 -2.68 5.49 -103.35 -0.57 -3.25 16 8 C 0.59 8.59 7.47 -12.60 -0.09 8.49 16 9 O -0.53 -10.12 15.03 5.25 0.08 -10.04 16 10 N -0.61 -7.28 2.87 -182.92 -0.53 -7.81 16 11 C 0.08 0.59 9.04 59.85 0.54 1.13 16 12 C 0.10 1.33 5.74 -4.04 -0.02 1.31 16 13 C 0.11 1.45 5.77 -4.04 -0.02 1.43 16 14 N -0.63 -9.32 2.87 -181.57 -0.52 -9.84 16 15 C 0.08 0.85 10.29 59.85 0.62 1.47 16 16 C 0.53 10.69 7.69 -10.98 -0.08 10.61 16 17 O -0.50 -12.43 15.44 5.56 0.09 -12.34 16 18 C -0.15 -3.15 4.71 36.01 0.17 -2.98 16 19 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 20 C -0.54 -15.57 9.50 30.94 0.29 -15.28 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.75 13.22 55.49 0.73 -26.02 16 24 Si 0.92 21.78 29.55 -169.99 -5.02 16.75 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 1.36 6.57 -51.93 -0.34 1.02 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.17 0.50 8.06 -52.48 -0.42 0.08 16 32 H 0.15 0.95 6.44 -52.48 -0.34 0.61 16 33 H 0.05 0.33 7.36 -51.93 -0.38 -0.06 16 34 H 0.07 0.38 8.03 -51.93 -0.42 -0.04 16 35 H 0.08 0.54 5.84 -51.93 -0.30 0.24 16 36 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 37 H 0.09 1.60 7.36 -51.93 -0.38 1.21 16 38 H 0.09 1.45 7.42 -51.93 -0.39 1.07 16 39 H 0.07 0.72 7.89 -51.93 -0.41 0.31 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.81 6.44 -51.93 -0.33 0.48 16 42 H 0.07 0.51 7.89 -51.93 -0.41 0.10 16 43 H 0.09 1.72 7.40 -51.92 -0.38 1.33 16 44 H 0.09 1.74 8.11 -51.92 -0.42 1.32 16 45 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 388.40 15.07 5.85 5.85 Total: -1.00 -39.98 388.40 -8.13 -48.10 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.53 Total: 0.36 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -0.02 Total: 2.67 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.37 Total: -47.44 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: 0.16 Total: -22.38 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.98 -8.13 -48.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285353280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.825 kcal (2) G-P(sol) polarization free energy of solvation -39.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds