Wall clock time and date at job start Tue Mar 31 2020 23:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34658 * 125.80685 * 2 1 4 4 H 0.96998 * 124.85005 * 359.94442 * 3 2 1 5 5 C 1.36446 * 110.30193 * 180.20411 * 3 2 1 6 6 C 1.34489 * 108.85535 * 359.61798 * 5 3 2 7 7 C 1.36776 * 125.79848 * 179.97438 * 2 1 3 8 8 C 1.47258 * 126.94488 * 359.97438 * 7 2 1 9 9 O 1.21629 * 119.99903 * 323.76750 * 8 7 2 10 10 N 1.34770 * 120.00297 * 143.75715 * 8 7 2 11 11 C 1.46502 * 119.99865 * 4.55425 * 10 8 7 12 12 C 1.46494 * 120.00378 * 184.54735 * 10 8 7 13 13 C 1.52999 * 109.47169 * 90.00418 * 12 10 8 14 14 N 1.46497 * 109.47547 * 179.97438 * 13 12 10 15 15 C 1.46500 * 120.00262 * 270.00523 * 14 13 12 16 16 C 1.34777 * 119.99714 * 89.99808 * 14 13 12 17 17 O 1.21279 * 120.00491 * 0.02562 * 16 14 13 18 18 C 1.50705 * 120.00024 * 180.02562 * 16 14 13 19 19 S 1.80996 * 109.47251 * 180.02562 * 18 16 14 20 20 C 1.76198 * 99.99947 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00243 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99927 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00051 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99969 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47204 * 60.00004 * 24 22 20 26 26 H 1.48500 * 109.47025 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47191 * 299.99872 * 24 22 20 28 28 H 1.09003 * 109.46635 * 90.02279 * 1 2 3 29 29 H 1.08998 * 109.47501 * 210.02603 * 1 2 3 30 30 H 1.09004 * 109.47020 * 330.02771 * 1 2 3 31 31 H 1.08003 * 125.57415 * 179.77048 * 5 3 2 32 32 H 1.08003 * 126.83375 * 180.13275 * 6 5 3 33 33 H 1.09000 * 109.47306 * 84.81915 * 11 10 8 34 34 H 1.08999 * 109.47199 * 204.82491 * 11 10 8 35 35 H 1.09001 * 109.47037 * 324.82130 * 11 10 8 36 36 H 1.09005 * 109.47343 * 210.00470 * 12 10 8 37 37 H 1.08996 * 109.47280 * 330.00586 * 12 10 8 38 38 H 1.09005 * 109.47030 * 300.00243 * 13 12 10 39 39 H 1.09001 * 109.47344 * 59.99906 * 13 12 10 40 40 H 1.08996 * 109.47714 * 89.99510 * 15 14 13 41 41 H 1.09002 * 109.46932 * 209.99904 * 15 14 13 42 42 H 1.09000 * 109.46984 * 329.99362 * 15 14 13 43 43 H 1.08999 * 109.46957 * 300.00280 * 18 16 14 44 44 H 1.09002 * 109.46848 * 60.00013 * 18 16 14 45 45 H 0.97003 * 120.00091 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0073 -0.0008 5 6 3.6095 0.7273 -0.0046 6 6 3.6882 -0.6153 0.0009 7 6 2.3070 -1.1094 0.0005 8 6 1.8701 -2.5157 0.0017 9 8 0.8786 -2.8439 0.6248 10 7 2.5689 -3.4390 -0.6880 11 6 3.8175 -3.0640 -1.3563 12 6 2.0801 -4.8176 -0.7691 13 6 1.1711 -4.9653 -1.9909 14 7 0.6827 -6.3440 -2.0725 15 6 1.4427 -7.3472 -2.8223 16 6 -0.4657 -6.6896 -1.4576 17 8 -1.0951 -5.8591 -0.8372 18 6 -0.9679 -8.1080 -1.5410 19 16 -2.5201 -8.2536 -0.6215 20 6 -2.8692 -9.9614 -0.8790 21 1 -2.1947 -10.5681 -1.4648 22 6 -4.0118 -10.5266 -0.3298 23 7 -4.8343 -9.7870 0.3838 24 14 -4.3823 -12.3370 -0.6034 25 1 -3.2749 -13.1578 -0.0511 26 1 -5.6506 -12.6918 0.0827 27 1 -4.5156 -12.6006 -2.0587 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5134 31 1 4.4498 1.4059 -0.0091 32 1 4.5890 -1.2111 0.0013 33 1 4.6414 -3.1197 -0.6449 34 1 4.0056 -3.7472 -2.1845 35 1 3.7343 -2.0460 -1.7369 36 1 2.9264 -5.4983 -0.8614 37 1 1.5176 -5.0574 0.1332 38 1 0.3248 -4.2845 -1.8986 39 1 1.7335 -4.7255 -2.8933 40 1 2.1576 -7.8328 -2.1581 41 1 0.7588 -8.0930 -3.2276 42 1 1.9771 -6.8624 -3.6393 43 1 -1.1381 -8.3724 -2.5847 44 1 -0.2263 -8.7818 -1.1118 45 1 -5.6326 -10.1821 0.7679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285353280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:49 Heat of formation + Delta-G solvation = -42.828135 kcal Electronic energy + Delta-G solvation = -26627.628441 eV Core-core repulsion = 22771.614359 eV Total energy + Delta-G solvation = -3856.014082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.21366 -40.97899 -40.13490 -37.22224 -36.18807 -34.58554 -32.79477 -32.51085 -31.55281 -29.75946 -27.88341 -27.69513 -27.59915 -26.74460 -24.82680 -22.45816 -21.63973 -20.67150 -19.58027 -19.49135 -18.52146 -18.09966 -17.50908 -17.11021 -16.93566 -16.87989 -16.53416 -16.15774 -15.73355 -15.37146 -14.80470 -14.76577 -14.64340 -14.42672 -14.32597 -14.03346 -13.96514 -13.78041 -13.58426 -13.53102 -13.49619 -13.23089 -13.17891 -13.10484 -12.85598 -12.75003 -12.63070 -12.52566 -12.03917 -11.72706 -11.12616 -10.99519 -10.85130 -10.26186 -10.08882 -9.71141 -9.43358 -9.06991 -8.68973 -8.33834 -6.13561 0.82788 1.24214 1.44219 1.44472 1.53776 1.57429 1.60411 1.85331 2.25359 2.28671 2.36975 2.53363 2.99733 3.27267 3.67462 3.82763 3.91589 4.04418 4.08683 4.21527 4.26683 4.29082 4.36209 4.38259 4.42476 4.47770 4.59692 4.63751 4.71699 4.75206 4.79522 4.92800 4.97888 5.00212 5.02149 5.05382 5.23228 5.41029 5.45357 5.67182 5.82926 6.01864 6.19620 6.25968 6.46251 6.70583 7.06240 7.16185 7.29835 8.75428 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022237 B = 0.002170 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.880013 B =12901.846450 C =13836.111331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.083 3.917 3 N -0.538 5.538 4 H 0.432 0.568 5 C 0.001 3.999 6 C -0.182 4.182 7 C -0.262 4.262 8 C 0.574 3.426 9 O -0.593 6.593 10 N -0.609 5.609 11 C 0.075 3.925 12 C 0.109 3.891 13 C 0.113 3.887 14 N -0.610 5.610 15 C 0.070 3.930 16 C 0.523 3.477 17 O -0.564 6.564 18 C -0.118 4.118 19 S -0.163 6.163 20 C -0.544 4.544 21 H 0.086 0.914 22 C 0.010 3.990 23 N -0.914 5.914 24 Si 1.003 2.997 25 H -0.261 1.261 26 H -0.280 1.280 27 H -0.260 1.260 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.212 0.788 32 H 0.165 0.835 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.750 20.324 -9.531 34.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.036 4.036 3 N -0.135 5.135 4 H 0.272 0.728 5 C -0.127 4.127 6 C -0.205 4.205 7 C -0.272 4.272 8 C 0.366 3.634 9 O -0.474 6.474 10 N -0.341 5.341 11 C -0.066 4.066 12 C -0.016 4.016 13 C -0.011 4.011 14 N -0.345 5.345 15 C -0.071 4.071 16 C 0.311 3.689 17 O -0.441 6.441 18 C -0.269 4.269 19 S 0.064 5.936 20 C -0.691 4.691 21 H 0.104 0.896 22 C -0.195 4.195 23 N -0.550 5.550 24 Si 0.824 3.176 25 H -0.185 1.185 26 H -0.205 1.205 27 H -0.184 1.184 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.228 0.772 32 H 0.183 0.817 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.131 0.869 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.138 0.862 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 25.198 21.527 -8.231 34.148 hybrid contribution -0.357 -1.593 -0.287 1.657 sum 24.840 19.934 -8.518 32.969 Atomic orbital electron populations 1.20494 0.87736 1.04011 1.03424 1.20259 0.93734 0.86587 1.02994 1.41577 1.06182 1.08413 1.57326 0.72828 1.22398 0.86145 0.96396 1.07734 1.22370 0.94525 0.94528 1.09109 1.20130 0.95843 0.90571 1.20636 1.18172 0.81728 0.85903 0.77646 1.90831 1.29234 1.82135 1.45247 1.47678 1.25495 1.08691 1.52270 1.22280 0.83385 1.03112 0.97844 1.21679 0.98758 0.83128 0.98005 1.21754 0.97580 0.82087 0.99688 1.47792 1.22616 1.11444 1.52604 1.22187 0.96593 0.91528 0.96796 1.20330 0.80956 0.89416 0.78222 1.90746 1.57953 1.52868 1.42563 1.23350 1.01768 0.96370 1.05450 1.85759 1.24380 1.14720 1.68772 1.23158 1.12224 0.94578 1.39179 0.89636 1.26214 0.94663 1.04716 0.93876 1.70207 1.12981 1.38643 1.33163 0.84951 0.77819 0.75785 0.79089 1.18505 1.20484 1.18395 0.90177 0.92085 0.88851 0.77181 0.81713 0.91108 0.88726 0.89606 0.86881 0.94461 0.94115 0.86207 0.90749 0.90659 0.87413 0.87046 0.87265 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.13 10.21 71.23 0.73 -1.40 16 2 C 0.08 1.71 7.17 41.78 0.30 2.01 16 3 N -0.54 -6.06 5.90 -182.72 -1.08 -7.14 16 4 H 0.43 1.83 8.96 -92.71 -0.83 1.00 16 5 C 0.00 0.01 11.89 83.12 0.99 1.00 16 6 C -0.18 -2.64 8.76 23.62 0.21 -2.43 16 7 C -0.26 -6.23 5.49 -19.04 -0.10 -6.34 16 8 C 0.57 18.11 7.47 86.62 0.65 18.76 16 9 O -0.59 -25.88 15.03 -4.12 -0.06 -25.95 16 10 N -0.61 -14.45 2.87 -850.87 -2.44 -16.90 16 11 C 0.07 0.88 9.04 127.77 1.16 2.03 16 12 C 0.11 2.86 5.74 86.38 0.50 3.36 16 13 C 0.11 3.01 5.77 86.38 0.50 3.51 16 14 N -0.61 -17.60 2.87 -846.76 -2.43 -20.03 16 15 C 0.07 1.19 10.29 127.77 1.31 2.51 16 16 C 0.52 21.93 7.69 87.66 0.67 22.60 16 17 O -0.56 -30.26 15.44 -3.03 -0.05 -30.31 16 18 C -0.12 -5.05 4.71 71.24 0.34 -4.71 16 19 S -0.16 -9.68 20.57 -56.49 -1.16 -10.84 16 20 C -0.54 -32.10 9.50 67.95 0.65 -31.46 16 21 H 0.09 4.62 7.80 -2.91 -0.02 4.60 16 22 C 0.01 0.57 5.49 84.86 0.47 1.04 16 23 N -0.91 -58.29 13.22 21.65 0.29 -58.00 16 24 Si 1.00 44.69 29.55 68.60 2.03 46.72 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 27 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.87 6.57 -2.39 -0.02 1.85 16 30 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.21 0.09 8.06 -2.91 -0.02 0.07 16 32 H 0.17 1.62 6.44 -2.91 -0.02 1.60 16 33 H 0.07 0.62 7.36 -2.39 -0.02 0.60 16 34 H 0.09 0.61 8.03 -2.39 -0.02 0.59 16 35 H 0.09 0.94 5.84 -2.39 -0.01 0.93 16 36 H 0.11 2.06 8.07 -2.38 -0.02 2.04 16 37 H 0.04 1.41 7.36 -2.39 -0.02 1.39 16 38 H 0.04 1.48 7.42 -2.38 -0.02 1.46 16 39 H 0.12 2.03 7.89 -2.39 -0.02 2.01 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.34 6.44 -2.39 -0.02 1.33 16 42 H 0.11 1.03 7.89 -2.39 -0.02 1.01 16 43 H 0.11 4.22 7.40 -2.40 -0.02 4.20 16 44 H 0.11 4.19 8.11 -2.39 -0.02 4.17 16 45 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -99.40 388.40 3.62 -95.78 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.18 Total: 16.20 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 8.35 Total: 10.47 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -5.67 Total: -102.07 kcal Atomic # 8 Polarization: -56.15 SS G_CDS: -0.11 Total: -56.26 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -9.68 SS G_CDS: -1.16 Total: -10.84 kcal Total: -99.40 3.62 -95.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285353280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.949 kcal (2) G-P(sol) polarization free energy of solvation -99.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds