Wall clock time and date at job start Tue Mar 31 2020 23:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34496 * 125.57019 * 2 1 4 4 C 1.46691 * 106.33050 * 179.97438 * 3 2 1 5 5 C 1.47254 * 126.93848 * 180.02562 * 4 3 2 6 6 O 1.21620 * 120.00036 * 179.97438 * 5 4 3 7 7 N 1.34782 * 120.00425 * 359.97438 * 5 4 3 8 8 C 1.46502 * 120.00349 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46900 * 179.97438 * 8 7 5 10 10 H 1.08994 * 109.47034 * 294.99849 * 9 8 7 11 11 C 1.53005 * 109.46584 * 174.99886 * 9 8 7 12 12 N 1.46501 * 109.46969 * 55.00362 * 9 8 7 13 13 C 1.34775 * 119.99592 * 204.99817 * 12 9 8 14 14 O 1.21283 * 120.00114 * 359.97438 * 13 12 9 15 15 C 1.50697 * 120.00043 * 180.02562 * 13 12 9 16 16 S 1.81004 * 109.47272 * 179.97438 * 15 13 12 17 17 C 1.76203 * 99.99811 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99938 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99964 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99644 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00102 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46926 * 90.00083 * 21 19 17 23 23 H 1.48496 * 109.47281 * 209.99663 * 21 19 17 24 24 H 1.48500 * 109.47206 * 330.00278 * 21 19 17 25 25 C 1.36767 * 106.11385 * 359.97438 * 4 3 2 26 26 C 1.50703 * 125.79733 * 180.02562 * 25 4 3 27 27 N 1.34658 * 108.40157 * 0.26764 * 25 4 3 28 28 H 0.96999 * 124.85098 * 179.70548 * 27 25 4 29 29 H 1.08999 * 109.47501 * 90.02406 * 1 2 3 30 30 H 1.08999 * 109.47152 * 210.02474 * 1 2 3 31 31 H 1.09006 * 109.47084 * 330.02163 * 1 2 3 32 32 H 1.08000 * 126.83304 * 359.97438 * 3 2 1 33 33 H 0.97002 * 119.99772 * 359.97438 * 7 5 4 34 34 H 1.08995 * 109.46904 * 299.99914 * 8 7 5 35 35 H 1.09000 * 109.46764 * 59.99649 * 8 7 5 36 36 H 1.09001 * 109.46678 * 180.02562 * 11 9 8 37 37 H 1.08996 * 109.47245 * 300.00264 * 11 9 8 38 38 H 1.09003 * 109.47153 * 60.00644 * 11 9 8 39 39 H 0.96995 * 120.00485 * 24.99353 * 12 9 8 40 40 H 1.09009 * 109.46669 * 299.99454 * 15 13 12 41 41 H 1.08999 * 109.47721 * 59.99128 * 15 13 12 42 42 H 0.97000 * 119.99906 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.47152 * 90.00020 * 26 25 4 44 44 H 1.09001 * 109.46980 * 330.00120 * 26 25 4 45 45 H 1.09004 * 109.47113 * 210.00101 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0940 0.0000 4 6 3.6743 0.6106 0.0006 5 6 4.8977 1.4303 0.0014 6 8 5.9891 0.8937 0.0023 7 7 4.8079 2.7751 0.0010 8 6 6.0251 3.5905 0.0024 9 6 5.6458 5.0728 0.0010 10 1 5.1364 5.3166 -0.9312 11 6 6.9115 5.9230 0.1281 12 7 4.7557 5.3501 1.1310 13 6 3.9043 6.3935 1.0779 14 8 3.8755 7.1032 0.0948 15 6 2.9891 6.6792 2.2405 16 16 1.9768 8.1329 1.8684 17 6 1.0304 8.2343 3.3513 18 1 1.1833 7.5124 4.1398 19 6 0.0893 9.2427 3.5064 20 7 -0.0966 10.1228 2.5454 21 14 -0.9145 9.3498 5.0780 22 1 -0.2026 10.2035 6.0628 23 1 -2.2425 9.9425 4.7778 24 1 -1.0962 7.9886 5.6431 25 6 3.5998 -0.7550 0.0015 26 6 4.7722 -1.7019 0.0030 27 7 2.3008 -1.1098 -0.0045 28 1 1.9758 -2.0237 -0.0093 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 1.9628 2.1235 -0.0004 33 1 3.9374 3.2031 -0.0001 34 1 6.6118 3.3660 0.8931 35 1 6.6140 3.3656 -0.8869 36 1 6.6413 6.9790 0.1276 37 1 7.4209 5.6791 1.0603 38 1 7.5738 5.7167 -0.7127 39 1 4.7789 4.7827 1.9174 40 1 2.3414 5.8195 2.4128 41 1 3.5844 6.8703 3.1333 42 1 -0.7540 10.8277 2.6539 43 1 5.0542 -1.9294 1.0310 44 1 5.6144 -1.2381 -0.5106 45 1 4.4961 -2.6229 -0.5104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285711145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:10 Heat of formation + Delta-G solvation = -48.280723 kcal Electronic energy + Delta-G solvation = -26287.693840 eV Core-core repulsion = 22431.443316 eV Total energy + Delta-G solvation = -3856.250524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.58422 -39.74108 -38.89335 -36.24478 -33.74849 -32.86224 -32.43645 -31.70267 -31.00945 -29.44091 -28.57005 -26.77032 -25.49009 -24.85947 -22.41122 -21.64169 -20.60652 -20.32234 -19.64444 -17.87826 -17.25747 -16.63349 -16.54942 -15.88979 -15.63803 -15.44102 -14.89018 -14.81295 -14.68194 -14.13770 -14.06323 -13.81777 -13.52594 -13.47308 -13.26979 -13.01305 -12.90472 -12.79338 -12.62022 -12.55483 -12.49664 -12.36319 -12.01649 -11.82654 -11.71008 -11.09231 -11.07067 -11.02616 -10.76423 -9.94536 -9.82215 -9.43033 -9.24889 -9.08040 -8.99285 -8.95814 -8.25392 -8.24359 -6.50638 -6.22494 -3.92865 1.54703 2.13132 2.75859 2.99962 3.06120 3.21687 3.25032 3.28740 3.33605 3.44880 3.71585 4.19788 4.49370 4.51074 4.59378 4.83299 4.94271 5.00126 5.01351 5.12527 5.13223 5.21624 5.24162 5.29801 5.36641 5.43189 5.54450 5.56908 5.60432 5.61446 5.68398 5.72294 5.88041 5.98335 6.00422 6.13428 6.16010 6.36433 6.54530 6.62320 6.70192 7.15811 7.49773 7.59028 7.68413 8.24077 8.34601 8.59128 9.23042 10.84899 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.002678 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.002129 B =10453.184940 C =12627.296284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.013 3.987 3 C -0.163 4.163 4 C -0.236 4.236 5 C 0.593 3.407 6 O -0.555 6.555 7 N -0.725 5.725 8 C 0.116 3.884 9 C 0.132 3.868 10 H 0.095 0.905 11 C -0.161 4.161 12 N -0.736 5.736 13 C 0.533 3.467 14 O -0.515 6.515 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.106 3.894 26 C -0.094 4.094 27 N -0.550 5.550 28 H 0.413 0.587 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.146 0.854 33 H 0.405 0.595 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.399 0.601 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.557 -24.094 -4.930 25.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.187 4.187 4 C -0.246 4.246 5 C 0.383 3.617 6 O -0.435 6.435 7 N -0.377 5.377 8 C -0.009 4.009 9 C 0.026 3.974 10 H 0.113 0.887 11 C -0.220 4.220 12 N -0.392 5.392 13 C 0.319 3.681 14 O -0.389 6.389 15 C -0.305 4.305 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.012 4.012 26 C -0.151 4.151 27 N -0.147 5.147 28 H 0.250 0.750 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.164 0.836 33 H 0.240 0.760 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.116 -23.203 -6.654 25.467 hybrid contribution -1.257 -1.125 2.588 3.089 sum 6.859 -24.328 -4.066 25.602 Atomic orbital electron populations 1.20365 0.87542 1.03622 1.02898 1.20255 0.93603 0.85861 1.09869 1.21876 0.90770 0.98023 1.08036 1.20057 0.92901 0.92219 1.19385 1.17322 0.87752 0.81468 0.75158 1.90719 1.28693 1.72489 1.51634 1.45763 1.10004 1.05906 1.76041 1.21660 0.87384 0.88586 1.03234 1.21146 0.91813 0.92725 0.91685 0.88729 1.22113 0.96474 1.01248 1.02136 1.46145 1.40411 1.32367 1.20228 1.20320 0.79659 0.79510 0.88569 1.90708 1.67989 1.46983 1.33215 1.23541 1.01279 1.06724 0.98931 1.85391 1.43420 1.29071 1.25396 1.22865 1.24776 1.17420 1.03270 0.90954 1.24987 0.96444 0.94698 0.97451 1.70015 1.33415 1.14856 1.32010 0.86177 0.79048 0.78446 0.81887 1.20286 1.20768 1.19692 1.20285 0.84868 0.94224 1.01826 1.20571 0.94696 0.96409 1.03451 1.41544 1.05330 1.08814 1.58971 0.74998 0.90874 0.91793 0.89578 0.83583 0.76010 0.90896 0.90115 0.91111 0.92226 0.91536 0.76700 0.89235 0.89254 0.92191 0.90461 0.88009 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 10.41 36.01 0.37 -0.16 16 2 C 0.01 0.11 7.13 -81.86 -0.58 -0.47 16 3 C -0.16 -1.70 10.45 -37.49 -0.39 -2.09 16 4 C -0.24 -2.72 6.29 -103.35 -0.65 -3.37 16 5 C 0.59 7.48 7.81 -12.59 -0.10 7.38 16 6 O -0.56 -8.18 14.81 5.26 0.08 -8.10 16 7 N -0.73 -7.84 5.38 -61.44 -0.33 -8.17 16 8 C 0.12 1.15 5.23 -4.04 -0.02 1.13 16 9 C 0.13 1.45 2.73 -67.93 -0.19 1.27 16 10 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 11 C -0.16 -1.67 9.48 37.16 0.35 -1.32 16 12 N -0.74 -9.14 4.52 -53.81 -0.24 -9.39 16 13 C 0.53 9.34 7.81 -10.99 -0.09 9.25 16 14 O -0.52 -11.04 15.52 5.56 0.09 -10.96 16 15 C -0.15 -2.99 6.16 36.00 0.22 -2.77 16 16 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 17 C -0.54 -15.01 9.50 30.94 0.29 -14.72 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 21 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C 0.11 1.03 7.17 -81.88 -0.59 0.44 16 26 C -0.09 -0.74 9.88 36.01 0.36 -0.39 16 27 N -0.55 -4.17 5.90 -5.42 -0.03 -4.20 16 28 H 0.41 1.80 8.96 -40.82 -0.37 1.43 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.15 1.41 7.70 -52.49 -0.40 1.00 16 33 H 0.40 4.22 7.26 -40.82 -0.30 3.93 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.40 4.13 8.60 -40.82 -0.35 3.78 16 40 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 41 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.10 1.00 6.47 -51.93 -0.34 0.66 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 396.75 15.07 5.98 5.98 Total: -1.00 -36.14 396.75 -8.83 -44.96 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.76 Total: 6.49 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.10 Total: -3.83 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.13 Total: -46.92 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.16 Total: -19.06 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.14 -8.83 -44.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285711145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.316 kcal (2) G-P(sol) polarization free energy of solvation -36.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds