Wall clock time and date at job start Tue Mar 31 2020 23:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34496 * 125.57019 * 2 1 4 4 C 1.46691 * 106.33050 * 179.97438 * 3 2 1 5 5 C 1.47254 * 126.93848 * 180.02562 * 4 3 2 6 6 O 1.21620 * 120.00036 * 179.97438 * 5 4 3 7 7 N 1.34782 * 120.00425 * 359.97438 * 5 4 3 8 8 C 1.46502 * 120.00349 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46900 * 179.97438 * 8 7 5 10 10 H 1.08994 * 109.47034 * 294.99849 * 9 8 7 11 11 C 1.53005 * 109.46584 * 174.99886 * 9 8 7 12 12 N 1.46501 * 109.46969 * 55.00362 * 9 8 7 13 13 C 1.34775 * 119.99592 * 204.99817 * 12 9 8 14 14 O 1.21283 * 120.00114 * 359.97438 * 13 12 9 15 15 C 1.50697 * 120.00043 * 180.02562 * 13 12 9 16 16 S 1.81004 * 109.47272 * 179.97438 * 15 13 12 17 17 C 1.76203 * 99.99811 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99938 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99964 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99644 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00102 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46926 * 90.00083 * 21 19 17 23 23 H 1.48496 * 109.47281 * 209.99663 * 21 19 17 24 24 H 1.48500 * 109.47206 * 330.00278 * 21 19 17 25 25 C 1.36767 * 106.11385 * 359.97438 * 4 3 2 26 26 C 1.50703 * 125.79733 * 180.02562 * 25 4 3 27 27 N 1.34658 * 108.40157 * 0.26764 * 25 4 3 28 28 H 0.96999 * 124.85098 * 179.70548 * 27 25 4 29 29 H 1.08999 * 109.47501 * 90.02406 * 1 2 3 30 30 H 1.08999 * 109.47152 * 210.02474 * 1 2 3 31 31 H 1.09006 * 109.47084 * 330.02163 * 1 2 3 32 32 H 1.08000 * 126.83304 * 359.97438 * 3 2 1 33 33 H 0.97002 * 119.99772 * 359.97438 * 7 5 4 34 34 H 1.08995 * 109.46904 * 299.99914 * 8 7 5 35 35 H 1.09000 * 109.46764 * 59.99649 * 8 7 5 36 36 H 1.09001 * 109.46678 * 180.02562 * 11 9 8 37 37 H 1.08996 * 109.47245 * 300.00264 * 11 9 8 38 38 H 1.09003 * 109.47153 * 60.00644 * 11 9 8 39 39 H 0.96995 * 120.00485 * 24.99353 * 12 9 8 40 40 H 1.09009 * 109.46669 * 299.99454 * 15 13 12 41 41 H 1.08999 * 109.47721 * 59.99128 * 15 13 12 42 42 H 0.97000 * 119.99906 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.47152 * 90.00020 * 26 25 4 44 44 H 1.09001 * 109.46980 * 330.00120 * 26 25 4 45 45 H 1.09004 * 109.47113 * 210.00101 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0940 0.0000 4 6 3.6743 0.6106 0.0006 5 6 4.8977 1.4303 0.0014 6 8 5.9891 0.8937 0.0023 7 7 4.8079 2.7751 0.0010 8 6 6.0251 3.5905 0.0024 9 6 5.6458 5.0728 0.0010 10 1 5.1364 5.3166 -0.9312 11 6 6.9115 5.9230 0.1281 12 7 4.7557 5.3501 1.1310 13 6 3.9043 6.3935 1.0779 14 8 3.8755 7.1032 0.0948 15 6 2.9891 6.6792 2.2405 16 16 1.9768 8.1329 1.8684 17 6 1.0304 8.2343 3.3513 18 1 1.1833 7.5124 4.1398 19 6 0.0893 9.2427 3.5064 20 7 -0.0966 10.1228 2.5454 21 14 -0.9145 9.3498 5.0780 22 1 -0.2026 10.2035 6.0628 23 1 -2.2425 9.9425 4.7778 24 1 -1.0962 7.9886 5.6431 25 6 3.5998 -0.7550 0.0015 26 6 4.7722 -1.7019 0.0030 27 7 2.3008 -1.1098 -0.0045 28 1 1.9758 -2.0237 -0.0093 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 1.9628 2.1235 -0.0004 33 1 3.9374 3.2031 -0.0001 34 1 6.6118 3.3660 0.8931 35 1 6.6140 3.3656 -0.8869 36 1 6.6413 6.9790 0.1276 37 1 7.4209 5.6791 1.0603 38 1 7.5738 5.7167 -0.7127 39 1 4.7789 4.7827 1.9174 40 1 2.3414 5.8195 2.4128 41 1 3.5844 6.8703 3.1333 42 1 -0.7540 10.8277 2.6539 43 1 5.0542 -1.9294 1.0310 44 1 5.6144 -1.2381 -0.5106 45 1 4.4961 -2.6229 -0.5104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285711145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:09 Heat of formation + Delta-G solvation = -74.511683 kcal Electronic energy + Delta-G solvation = -26288.831300 eV Core-core repulsion = 22431.443316 eV Total energy + Delta-G solvation = -3857.387984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.29232 -40.93147 -39.98513 -37.37789 -34.79172 -34.56283 -33.51057 -32.80037 -31.88041 -30.05329 -29.94781 -27.64565 -27.60549 -25.56573 -23.29337 -22.64239 -21.59672 -21.29504 -20.53792 -19.80762 -18.03046 -17.93478 -17.65805 -16.86279 -16.74334 -16.64743 -16.34806 -16.30932 -15.93367 -15.38164 -14.94766 -14.73043 -14.64892 -14.48883 -14.15770 -14.05968 -13.98041 -13.83713 -13.54359 -13.47145 -13.23944 -13.14123 -13.06009 -12.94071 -12.91295 -12.87618 -12.57223 -12.39471 -12.03047 -11.70315 -11.12729 -10.91996 -10.90583 -10.24672 -10.18705 -10.14328 -9.74957 -8.96223 -8.63463 -8.32974 -6.10063 0.74065 1.28629 1.41612 1.43266 1.48336 1.58561 1.63771 2.06473 2.25399 2.30456 2.50067 2.56507 3.01268 3.34265 3.59301 3.84252 3.96478 4.00474 4.08193 4.20003 4.24560 4.27257 4.35560 4.50574 4.54451 4.60710 4.64112 4.73349 4.74213 4.77854 4.80113 4.87279 5.01816 5.09317 5.14758 5.25161 5.33371 5.43933 5.46134 5.52194 5.80562 5.98840 6.21731 6.49177 6.55686 6.65321 7.08723 7.25599 7.31818 8.76082 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.002678 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.002129 B =10453.184940 C =12627.296284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.017 3.983 3 C -0.188 4.188 4 C -0.268 4.268 5 C 0.589 3.411 6 O -0.582 6.582 7 N -0.721 5.721 8 C 0.124 3.876 9 C 0.137 3.863 10 H 0.079 0.921 11 C -0.157 4.157 12 N -0.710 5.710 13 C 0.539 3.461 14 O -0.559 6.559 15 C -0.131 4.131 16 S -0.147 6.147 17 C -0.545 4.545 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.996 3.004 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.258 1.258 25 C 0.104 3.896 26 C -0.090 4.090 27 N -0.536 5.536 28 H 0.430 0.570 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.145 0.855 33 H 0.406 0.594 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.413 0.587 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.271 0.729 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.360 -26.621 -3.477 27.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.212 4.212 4 C -0.278 4.278 5 C 0.380 3.620 6 O -0.465 6.465 7 N -0.373 5.373 8 C 0.000 4.000 9 C 0.032 3.968 10 H 0.097 0.903 11 C -0.215 4.215 12 N -0.365 5.365 13 C 0.325 3.675 14 O -0.437 6.437 15 C -0.282 4.282 16 S 0.080 5.920 17 C -0.693 4.693 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.818 3.182 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.182 1.182 25 C -0.015 4.015 26 C -0.147 4.147 27 N -0.134 5.134 28 H 0.270 0.730 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.163 0.837 33 H 0.242 0.758 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.250 0.750 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.933 -25.783 -5.185 27.470 hybrid contribution -1.123 -0.454 2.081 2.408 sum 6.810 -26.237 -3.104 27.284 Atomic orbital electron populations 1.20436 0.85640 1.04463 1.03715 1.20625 0.94748 0.85647 1.08191 1.21995 0.90781 0.98722 1.09676 1.20188 0.92920 0.93206 1.21460 1.17554 0.87852 0.81848 0.74731 1.90697 1.29629 1.72974 1.53184 1.45753 1.10313 1.05641 1.75544 1.21621 0.87158 0.87184 1.03995 1.21193 0.91595 0.93759 0.90203 0.90308 1.22072 0.96307 0.99176 1.03980 1.45875 1.38910 1.30599 1.21129 1.19983 0.79975 0.80198 0.87338 1.90703 1.69454 1.48927 1.34590 1.23385 1.00920 1.03651 1.00278 1.85551 1.45628 1.34047 1.26730 1.23198 1.24938 1.17774 1.03384 0.90032 1.26096 0.97667 0.94115 1.01230 1.70178 1.34366 1.15720 1.34495 0.84983 0.77074 0.79094 0.77021 1.19481 1.20326 1.18159 1.20552 0.86047 0.94045 1.00852 1.20554 0.93331 0.96970 1.03860 1.41529 1.04517 1.09597 1.57747 0.72979 0.90000 0.89848 0.89851 0.83731 0.75839 0.89994 0.89454 0.93824 0.90699 0.89397 0.74985 0.87175 0.87542 0.92035 0.89933 0.90090 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 10.41 71.24 0.74 -0.12 16 2 C 0.02 0.28 7.13 40.98 0.29 0.57 16 3 C -0.19 -3.82 10.45 23.62 0.25 -3.57 16 4 C -0.27 -6.05 6.29 -19.04 -0.12 -6.17 16 5 C 0.59 14.67 7.81 86.61 0.68 15.35 16 6 O -0.58 -17.01 14.81 -4.10 -0.06 -17.07 16 7 N -0.72 -15.13 5.38 -466.53 -2.51 -17.64 16 8 C 0.12 2.30 5.23 86.38 0.45 2.75 16 9 C 0.14 2.90 2.73 44.99 0.12 3.02 16 10 H 0.08 2.00 7.58 -2.39 -0.02 1.98 16 11 C -0.16 -3.06 9.48 71.98 0.68 -2.38 16 12 N -0.71 -16.80 4.52 -442.53 -2.00 -18.80 16 13 C 0.54 18.76 7.81 87.66 0.68 19.44 16 14 O -0.56 -24.57 15.52 -3.04 -0.05 -24.62 16 15 C -0.13 -5.01 6.16 71.23 0.44 -4.57 16 16 S -0.15 -7.97 20.57 -56.49 -1.16 -9.13 16 17 C -0.55 -30.68 9.50 67.95 0.65 -30.03 16 18 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 19 C 0.01 0.77 5.49 84.86 0.47 1.24 16 20 N -0.91 -55.48 13.22 21.65 0.29 -55.19 16 21 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 C 0.10 1.90 7.17 41.78 0.30 2.19 16 26 C -0.09 -1.29 9.88 71.24 0.70 -0.59 16 27 N -0.54 -7.02 5.90 -171.06 -1.01 -8.03 16 28 H 0.43 2.54 8.96 -92.71 -0.83 1.71 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.14 2.81 7.70 -2.91 -0.02 2.78 16 33 H 0.41 8.31 7.26 -92.71 -0.67 7.64 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.41 7.68 8.60 -92.71 -0.80 6.88 16 40 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 41 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 42 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 1.56 6.47 -2.39 -0.02 1.54 16 45 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -80.82 396.75 0.59 -80.22 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -1.26 Total: 27.97 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 6.33 Total: -2.87 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -5.23 Total: -99.66 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.11 Total: -41.69 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.13 kcal Total: -80.82 0.59 -80.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285711145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.711 kcal (2) G-P(sol) polarization free energy of solvation -80.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds