Wall clock time and date at job start Tue Mar 31 2020 23:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34488 * 125.56798 * 2 1 4 4 C 1.46691 * 106.32830 * 179.97438 * 3 2 1 5 5 C 1.47267 * 126.93826 * 179.97438 * 4 3 2 6 6 O 1.21630 * 119.99849 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00147 * 0.04644 * 5 4 3 8 8 C 1.46503 * 119.99780 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46905 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47042 * 179.97438 * 9 8 7 11 11 N 1.46495 * 109.47274 * 179.97438 * 10 9 8 12 12 C 1.34780 * 120.00300 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99903 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99847 * 180.02562 * 12 11 10 15 15 S 1.81005 * 109.46741 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99712 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00182 * 359.97438 * 16 15 14 18 18 C 1.38800 * 119.99748 * 180.02562 * 16 15 14 19 19 N 1.31631 * 119.99889 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00198 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47099 * 89.99772 * 20 18 16 22 22 H 1.48497 * 109.47115 * 210.00002 * 20 18 16 23 23 H 1.48497 * 109.47200 * 330.00411 * 20 18 16 24 24 C 1.36763 * 106.11757 * 359.97438 * 4 3 2 25 25 C 1.50703 * 125.80106 * 180.02562 * 24 4 3 26 26 N 1.34658 * 108.39785 * 0.26724 * 24 4 3 27 27 H 0.96996 * 124.85358 * 179.74542 * 26 24 4 28 28 H 1.08997 * 109.47023 * 90.02271 * 1 2 3 29 29 H 1.08999 * 109.47152 * 210.02553 * 1 2 3 30 30 H 1.09004 * 109.47256 * 330.02758 * 1 2 3 31 31 H 1.08000 * 126.83799 * 359.95419 * 3 2 1 32 32 H 0.96994 * 119.99987 * 359.97438 * 7 5 4 33 33 H 1.09007 * 109.47064 * 299.99341 * 8 7 5 34 34 H 1.08993 * 109.47180 * 59.99678 * 8 7 5 35 35 H 1.08998 * 109.46731 * 299.99714 * 9 8 7 36 36 H 1.09004 * 109.47045 * 59.99763 * 9 8 7 37 37 H 1.08999 * 109.47299 * 300.00202 * 10 9 8 38 38 H 1.09004 * 109.47069 * 60.00176 * 10 9 8 39 39 H 0.97006 * 119.99982 * 0.02562 * 11 10 9 40 40 H 1.08999 * 109.47590 * 300.00190 * 14 12 11 41 41 H 1.08999 * 109.47094 * 60.00678 * 14 12 11 42 42 H 0.97001 * 120.00096 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.47152 * 89.99942 * 25 24 4 44 44 H 1.09001 * 109.46980 * 330.00042 * 25 24 4 45 45 H 1.09004 * 109.47113 * 210.00023 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0940 0.0000 4 6 3.6742 0.6106 0.0006 5 6 4.8977 1.4303 0.0003 6 8 5.9892 0.8937 0.0005 7 7 4.8079 2.7751 0.0003 8 6 6.0250 3.5904 0.0006 9 6 5.6459 5.0728 0.0012 10 6 6.9169 5.9243 0.0021 11 7 6.5539 7.3436 0.0021 12 6 7.5177 8.2857 0.0023 13 8 8.6855 7.9586 0.0021 14 6 7.1442 9.7457 0.0029 15 16 8.6480 10.7531 0.0023 16 6 7.9363 12.3650 0.0038 17 1 6.8626 12.4813 0.0043 18 6 8.7557 13.4854 0.0033 19 7 8.2241 14.6895 0.0039 20 14 10.6128 13.2843 0.0017 21 1 11.1038 13.2312 -1.3988 22 1 11.2360 14.4364 0.7014 23 1 10.9750 12.0254 0.7012 24 6 3.5998 -0.7550 0.0015 25 6 4.7722 -1.7019 0.0030 26 7 2.3008 -1.1098 -0.0045 27 1 1.9758 -2.0237 -0.0087 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8903 0.5134 31 1 1.9628 2.1234 -0.0007 32 1 3.9374 3.2030 0.0002 33 1 6.6127 3.3658 0.8908 34 1 6.6131 3.3658 -0.8892 35 1 5.0580 5.2977 -0.8887 36 1 5.0580 5.2970 0.8913 37 1 7.5045 5.6992 0.8922 38 1 7.5051 5.7001 -0.8878 39 1 5.6198 7.6053 0.0019 40 1 6.5562 9.9707 -0.8869 41 1 6.5565 9.9701 0.8930 42 1 8.7967 15.4725 0.0040 43 1 5.0542 -1.9294 1.0310 44 1 5.6144 -1.2381 -0.5106 45 1 4.4961 -2.6229 -0.5104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293156107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:01 Heat of formation + Delta-G solvation = -51.488633 kcal Electronic energy + Delta-G solvation = -24803.990003 eV Core-core repulsion = 20947.600374 eV Total energy + Delta-G solvation = -3856.389629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.78859 -39.51022 -39.16722 -36.26579 -34.48052 -33.09425 -32.43007 -32.11364 -31.08453 -29.65750 -29.14884 -26.08992 -25.58363 -24.79341 -22.53059 -21.97661 -20.84970 -20.42119 -19.78273 -17.84658 -17.44931 -16.59988 -16.30940 -16.28608 -16.10382 -15.63756 -15.42602 -15.06422 -14.93287 -14.33585 -14.31022 -13.93893 -13.74625 -13.69866 -13.61427 -13.22577 -13.03707 -12.98336 -12.79122 -12.75272 -12.56896 -12.35174 -12.03426 -11.92480 -11.88948 -11.31547 -11.25197 -10.99388 -10.59860 -10.09675 -9.84489 -9.52315 -9.42824 -9.19061 -9.01323 -8.95641 -8.48768 -8.46398 -6.90634 -6.27988 -3.99665 1.37201 1.89689 2.55220 2.75978 2.98955 3.06014 3.27895 3.33942 3.38644 3.52333 3.68358 4.26338 4.34495 4.40549 4.55779 4.61460 4.64276 4.69134 4.75235 4.81317 4.85826 4.97342 5.09550 5.11221 5.21427 5.25110 5.30602 5.32425 5.35100 5.36047 5.54270 5.61999 5.75407 5.80689 5.83393 5.89070 6.02135 6.19089 6.32468 6.48800 6.52049 6.95208 7.32143 7.60726 7.95037 8.09043 8.42345 8.50002 9.18343 10.81211 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030944 B = 0.001407 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.649624 B =19894.386033 C =20757.378725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.012 3.988 3 C -0.166 4.166 4 C -0.236 4.236 5 C 0.591 3.409 6 O -0.550 6.550 7 N -0.727 5.727 8 C 0.124 3.876 9 C -0.143 4.143 10 C 0.125 3.875 11 N -0.738 5.738 12 C 0.530 3.470 13 O -0.518 6.518 14 C -0.124 4.124 15 S -0.142 6.142 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.109 3.891 25 C -0.096 4.096 26 N -0.550 5.550 27 H 0.414 0.586 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.145 0.855 32 H 0.400 0.600 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.399 0.601 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.710 -34.196 0.053 38.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 C -0.190 4.190 4 C -0.245 4.245 5 C 0.380 3.620 6 O -0.429 6.429 7 N -0.378 5.378 8 C 0.000 4.000 9 C -0.181 4.181 10 C 0.000 4.000 11 N -0.392 5.392 12 C 0.316 3.684 13 O -0.393 6.393 14 C -0.275 4.275 15 S 0.084 5.916 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.009 4.009 25 C -0.154 4.154 26 N -0.147 5.147 27 H 0.251 0.749 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.162 0.838 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.233 0.767 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.121 0.879 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.997 -35.015 0.052 38.496 hybrid contribution -1.825 0.622 -0.023 1.928 sum -17.821 -34.394 0.030 38.737 Atomic orbital electron populations 1.20349 0.87628 1.03488 1.02870 1.20238 0.93550 0.85966 1.09973 1.21788 0.90793 0.97777 1.08651 1.20077 0.92871 0.92270 1.19329 1.17327 0.87780 0.81510 0.75344 1.90753 1.28683 1.72389 1.51062 1.45717 1.09721 1.05992 1.76401 1.21196 0.87049 0.88634 1.03102 1.21976 0.98593 0.93961 1.03574 1.21120 0.95975 0.79964 1.02960 1.45927 1.09761 1.05684 1.77847 1.20283 0.85516 0.87361 0.75273 1.90708 1.18473 1.82516 1.47581 1.23278 1.04929 0.93449 1.05809 1.84810 1.07668 1.01670 1.97426 1.22322 0.96853 0.88982 1.58785 0.89393 1.24709 0.99288 0.94120 0.93151 1.69939 1.36149 0.97535 1.48101 0.86733 0.85020 0.80150 0.79949 1.19200 1.19940 1.15910 1.20335 0.84869 0.94297 1.01393 1.20602 0.94673 0.96474 1.03608 1.41561 1.05362 1.08873 1.58883 0.74895 0.90872 0.91717 0.89849 0.83758 0.76571 0.90974 0.90970 0.90454 0.90456 0.91190 0.91197 0.76662 0.88487 0.88441 0.91951 0.90319 0.87882 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.22 10.41 36.01 0.37 0.15 16 2 C 0.01 0.06 7.13 -81.87 -0.58 -0.52 16 3 C -0.17 -1.14 10.45 -37.50 -0.39 -1.53 16 4 C -0.24 -2.14 6.29 -103.35 -0.65 -2.79 16 5 C 0.59 6.33 7.81 -12.59 -0.10 6.23 16 6 O -0.55 -7.56 14.81 5.25 0.08 -7.48 16 7 N -0.73 -5.87 5.55 -61.43 -0.34 -6.21 16 8 C 0.12 1.03 5.67 -4.04 -0.02 1.00 16 9 C -0.14 -0.97 5.44 -26.73 -0.15 -1.11 16 10 C 0.12 1.30 5.67 -4.05 -0.02 1.27 16 11 N -0.74 -8.92 5.56 -60.30 -0.33 -9.25 16 12 C 0.53 9.32 7.85 -10.98 -0.09 9.24 16 13 O -0.52 -11.25 15.86 5.56 0.09 -11.17 16 14 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 15 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 16 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 17 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 18 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 19 N -0.88 -26.59 13.97 55.49 0.78 -25.82 16 20 Si 0.86 21.88 27.74 -169.99 -4.71 17.16 16 21 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 24 C 0.11 0.84 7.17 -81.88 -0.59 0.25 16 25 C -0.10 -0.62 9.88 36.01 0.36 -0.27 16 26 N -0.55 -2.88 5.90 -5.42 -0.03 -2.91 16 27 H 0.41 0.91 8.96 -40.82 -0.37 0.54 16 28 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.14 0.68 7.70 -52.49 -0.40 0.27 16 32 H 0.40 2.24 7.60 -40.82 -0.31 1.93 16 33 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.40 3.56 8.47 -40.82 -0.35 3.22 16 40 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 41 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.10 0.90 6.46 -51.93 -0.34 0.56 16 45 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 395.75 15.07 5.96 5.96 Total: -1.00 -38.18 395.75 -8.77 -46.95 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.83 Total: 0.62 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -1.42 Total: -2.25 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.07 Total: -44.19 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.17 Total: -18.65 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.18 -8.77 -46.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293156107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.538 kcal (2) G-P(sol) polarization free energy of solvation -38.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds