Wall clock time and date at job start Tue Mar 31 2020 23:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39839 * 126.45455 * 2 1 4 4 C 1.35452 * 107.86271 * 180.26341 * 3 2 1 5 5 N 1.35525 * 108.87395 * 359.74497 * 4 3 2 6 6 H 0.96998 * 125.68287 * 180.02562 * 5 4 3 7 7 C 1.37655 * 108.64376 * 359.97438 * 5 4 3 8 8 C 1.46680 * 126.23468 * 180.02562 * 7 5 4 9 9 O 1.21693 * 120.00097 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99703 * 0.02562 * 8 7 5 11 11 C 1.46499 * 119.99665 * 179.72441 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.46748 * 180.02562 * 13 12 11 15 15 C 1.46494 * 119.99955 * 90.00392 * 14 13 12 16 16 C 1.34777 * 119.99692 * 269.99967 * 14 13 12 17 17 O 1.21279 * 120.00487 * 0.02562 * 16 14 13 18 18 C 1.50703 * 119.99892 * 180.02562 * 16 14 13 19 19 S 1.81002 * 109.47288 * 180.02562 * 18 16 14 20 20 C 1.76201 * 99.99863 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00083 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99834 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00077 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00015 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47159 * 60.00496 * 24 22 20 26 26 H 1.48500 * 109.47232 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47523 * 300.00749 * 24 22 20 28 28 H 1.09006 * 109.46972 * 270.18088 * 1 2 3 29 29 H 1.08993 * 109.47246 * 30.18149 * 1 2 3 30 30 H 1.09001 * 109.46620 * 150.18607 * 1 2 3 31 31 H 1.08005 * 126.07122 * 0.02562 * 3 2 1 32 32 H 1.08004 * 125.56004 * 179.71291 * 4 3 2 33 33 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 34 34 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 35 35 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 36 36 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 37 37 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 38 38 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 39 39 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 40 40 H 1.08998 * 109.47261 * 90.00116 * 15 14 13 41 41 H 1.09006 * 109.46899 * 209.99858 * 15 14 13 42 42 H 1.08991 * 109.47310 * 329.99868 * 15 14 13 43 43 H 1.09002 * 109.46734 * 300.00338 * 18 16 14 44 44 H 1.09001 * 109.47070 * 59.99937 * 18 16 14 45 45 H 0.97001 * 120.00067 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1248 0.0000 4 6 3.6218 0.6929 -0.0059 5 7 3.6285 -0.6623 -0.0039 6 1 4.4191 -1.2242 -0.0068 7 6 2.3263 -1.1088 0.0040 8 6 1.8900 -2.5092 0.0090 9 8 0.7028 -2.7766 0.0155 10 7 2.8039 -3.4998 0.0065 11 6 2.3681 -4.8984 0.0176 12 6 3.5936 -5.8145 0.0190 13 6 3.1384 -7.2751 0.0313 14 7 4.3119 -8.1522 0.0333 15 6 4.9032 -8.5816 1.3029 16 6 4.8472 -8.5641 -1.1330 17 8 4.3579 -8.2083 -2.1841 18 6 6.0540 -9.4668 -1.1310 19 16 6.5314 -9.8397 -2.8366 20 6 7.9236 -10.8794 -2.5443 21 1 8.2303 -11.0994 -1.5324 22 6 8.6261 -11.4157 -3.6145 23 7 8.2526 -11.1472 -4.8478 24 14 10.1024 -12.5174 -3.3047 25 1 9.6775 -13.7062 -2.5227 26 1 10.6734 -12.9567 -4.6032 27 1 11.1304 -11.7647 -2.5418 28 1 -0.3633 0.0032 1.0277 29 1 -0.3633 0.8883 -0.5166 30 1 -0.3632 -0.8917 -0.5110 31 1 2.0136 2.1550 0.0004 32 1 4.4972 1.3254 -0.0118 33 1 3.7502 -3.2867 0.0017 34 1 1.7729 -5.0865 0.9113 35 1 1.7660 -5.0985 -0.8687 36 1 4.1887 -5.6264 -0.8745 37 1 4.1957 -5.6145 0.9054 38 1 2.5435 -7.4629 0.9251 39 1 2.5361 -7.4755 -0.8549 40 1 4.4347 -9.5112 1.6260 41 1 5.9733 -8.7412 1.1697 42 1 4.7418 -7.8120 2.0576 43 1 6.8798 -8.9682 -0.6236 44 1 5.8137 -10.3934 -0.6097 45 1 8.7438 -11.5217 -5.5958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001294048280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:38 Heat of formation + Delta-G solvation = -61.472358 kcal Electronic energy + Delta-G solvation = -25526.419621 eV Core-core repulsion = 21669.597065 eV Total energy + Delta-G solvation = -3856.822556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.29846 -40.89596 -40.13522 -37.34256 -36.14714 -34.59089 -33.69626 -33.08163 -31.06819 -30.25431 -28.24046 -27.69726 -27.63048 -26.07262 -23.44820 -22.84579 -21.60160 -20.65022 -20.19702 -19.56645 -19.51126 -18.10044 -17.42130 -16.98966 -16.88523 -16.78978 -16.63936 -16.45456 -15.78499 -15.73189 -14.90912 -14.78297 -14.65625 -14.52342 -14.48792 -14.28145 -13.87287 -13.60540 -13.57010 -13.44544 -13.28562 -13.18257 -13.17794 -12.99315 -12.86063 -12.72505 -12.60962 -12.55528 -11.90103 -11.71988 -11.14678 -11.13350 -10.89282 -10.29044 -10.27343 -9.72481 -9.71358 -9.13448 -8.68244 -8.35008 -6.13652 0.42953 1.25447 1.43453 1.45693 1.54840 1.56365 1.81552 1.95463 2.17780 2.26339 2.28556 2.30530 2.99053 3.26231 3.68958 3.80188 3.92095 3.96539 4.10393 4.22208 4.24728 4.25506 4.35836 4.38742 4.41632 4.48392 4.54616 4.66073 4.78629 4.86515 4.87800 4.95640 4.98927 5.02475 5.08878 5.15918 5.28897 5.40769 5.44487 5.57284 5.75113 5.96316 6.18765 6.26499 6.40074 6.59518 7.06028 7.07941 7.14583 8.73879 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019404 B = 0.001728 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.637219 B =16204.013288 C =16856.094449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.095 4.095 3 C -0.232 4.232 4 C 0.049 3.951 5 N -0.531 5.531 6 H 0.430 0.570 7 C -0.092 4.092 8 C 0.584 3.416 9 O -0.568 6.568 10 N -0.720 5.720 11 C 0.130 3.870 12 C -0.132 4.132 13 C 0.117 3.883 14 N -0.610 5.610 15 C 0.070 3.930 16 C 0.529 3.471 17 O -0.565 6.565 18 C -0.124 4.124 19 S -0.156 6.156 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.261 1.261 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.159 0.841 32 H 0.212 0.788 33 H 0.407 0.593 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.288 21.411 19.138 29.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.256 4.256 4 C -0.088 4.088 5 N -0.128 5.128 6 H 0.270 0.730 7 C -0.204 4.204 8 C 0.373 3.627 9 O -0.447 6.447 10 N -0.372 5.372 11 C 0.006 3.994 12 C -0.171 4.171 13 C -0.006 4.006 14 N -0.344 5.344 15 C -0.072 4.072 16 C 0.316 3.684 17 O -0.443 6.443 18 C -0.275 4.275 19 S 0.072 5.928 20 C -0.694 4.694 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.187 1.187 26 H -0.205 1.205 27 H -0.185 1.185 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.177 0.823 32 H 0.229 0.771 33 H 0.243 0.757 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.124 0.876 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.716 21.522 17.445 29.043 hybrid contribution 2.007 -1.313 0.683 2.494 sum -6.709 20.209 18.129 27.965 Atomic orbital electron populations 1.20303 0.89673 1.02479 1.02104 1.20307 0.96313 0.91987 1.01839 1.21125 0.92313 0.99133 1.13002 1.22704 1.00426 0.82733 1.02969 1.41965 1.06514 1.07930 1.56365 0.73047 1.20053 0.85357 0.92715 1.22295 1.17319 0.85528 0.83967 0.75852 1.90793 1.17630 1.83987 1.52330 1.45764 1.09816 1.06148 1.75462 1.21195 0.96746 0.79081 1.02423 1.22001 0.97420 0.94239 1.03418 1.21425 0.86955 0.88034 1.04181 1.47844 1.31094 1.49243 1.06189 1.22119 0.99292 1.01933 0.83822 1.20175 0.84216 0.80177 0.83819 1.90688 1.62829 1.58039 1.32760 1.23383 0.98999 1.02181 1.02912 1.85606 1.38373 1.64020 1.04835 1.23163 1.15424 1.34658 0.96150 0.89835 1.26136 1.01178 0.97871 0.93978 1.70181 1.41238 1.44105 0.99259 0.85006 0.77050 0.78138 0.77823 1.18652 1.20502 1.18529 0.91474 0.90410 0.92564 0.82301 0.77100 0.75686 0.90089 0.92892 0.92942 0.88547 0.86623 0.92031 0.91197 0.90729 0.87761 0.87248 0.87605 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 9.83 71.24 0.70 -1.03 16 2 C -0.10 -1.88 6.21 -19.56 -0.12 -2.00 16 3 C -0.23 -3.19 10.76 22.01 0.24 -2.96 16 4 C 0.05 0.44 11.89 83.48 0.99 1.44 16 5 N -0.53 -5.87 5.99 -183.62 -1.10 -6.97 16 6 H 0.43 2.11 8.19 -92.71 -0.76 1.35 16 7 C -0.09 -1.77 7.06 40.35 0.28 -1.49 16 8 C 0.58 13.37 7.79 86.45 0.67 14.04 16 9 O -0.57 -17.17 14.81 -4.33 -0.06 -17.23 16 10 N -0.72 -12.24 5.55 -467.06 -2.59 -14.83 16 11 C 0.13 2.31 5.67 86.38 0.49 2.80 16 12 C -0.13 -2.21 5.65 30.59 0.17 -2.04 16 13 C 0.12 2.31 5.41 86.38 0.47 2.77 16 14 N -0.61 -14.56 2.87 -846.77 -2.43 -16.99 16 15 C 0.07 1.03 10.24 127.77 1.31 2.34 16 16 C 0.53 19.11 7.69 87.66 0.67 19.79 16 17 O -0.56 -25.86 15.44 -3.03 -0.05 -25.90 16 18 C -0.12 -4.80 4.71 71.24 0.34 -4.46 16 19 S -0.16 -8.57 20.57 -56.49 -1.16 -9.73 16 20 C -0.55 -30.80 9.50 67.95 0.65 -30.15 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 22 C 0.01 0.74 5.49 84.86 0.47 1.21 16 23 N -0.91 -55.73 13.22 21.65 0.29 -55.44 16 24 Si 1.00 42.93 29.55 68.60 2.03 44.96 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 26 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 28 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.37 6.49 -2.39 -0.02 1.35 16 31 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.21 0.13 8.06 -2.91 -0.02 0.11 16 33 H 0.41 4.52 7.60 -92.71 -0.70 3.82 16 34 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.12 1.45 8.07 -2.39 -0.02 1.43 16 39 H 0.06 1.59 7.42 -2.38 -0.02 1.57 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 1.15 6.44 -2.38 -0.02 1.14 16 42 H 0.10 0.84 8.07 -2.39 -0.02 0.82 16 43 H 0.11 3.77 7.40 -2.39 -0.02 3.75 16 44 H 0.11 3.74 8.11 -2.39 -0.02 3.72 16 45 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -87.04 394.25 1.80 -85.25 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -0.44 Total: 16.64 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 7.33 Total: 0.27 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -5.84 Total: -94.23 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -0.11 Total: -43.14 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -87.04 1.80 -85.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294048280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.773 kcal (2) G-P(sol) polarization free energy of solvation -87.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds