Wall clock time and date at job start Tue Mar 31 2020 23:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39833 * 126.45567 * 2 1 4 4 C 1.35459 * 107.86881 * 179.97438 * 3 2 1 5 5 N 1.35532 * 108.86726 * 359.76734 * 4 3 2 6 6 C 1.46499 * 125.68041 * 180.26011 * 5 4 3 7 7 C 1.37652 * 108.64450 * 0.37850 * 5 4 3 8 8 C 1.46680 * 126.23278 * 179.88346 * 7 5 4 9 9 O 1.21695 * 119.99511 * 98.24175 * 8 7 5 10 10 N 1.34769 * 120.00499 * 278.23692 * 8 7 5 11 11 C 1.46503 * 120.00316 * 174.81679 * 10 8 7 12 12 H 1.08999 * 109.47047 * 325.00407 * 11 10 8 13 13 C 1.53000 * 109.46943 * 85.00266 * 11 10 8 14 14 C 1.52998 * 109.47340 * 205.00061 * 11 10 8 15 15 N 1.46503 * 109.46892 * 55.00223 * 14 11 10 16 16 C 1.34780 * 120.00071 * 179.97438 * 15 14 11 17 17 O 1.21284 * 119.99928 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99768 * 179.97438 * 16 15 14 19 19 S 1.81007 * 109.46737 * 180.02562 * 18 16 15 20 20 C 1.76195 * 99.99869 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00128 * 359.97438 * 20 19 18 22 22 C 1.38804 * 120.00054 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99691 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00138 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47337 * 59.99868 * 24 22 20 26 26 H 1.48496 * 109.47170 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.47123 * 299.99690 * 24 22 20 28 28 H 1.08996 * 109.47336 * 270.03896 * 1 2 3 29 29 H 1.08995 * 109.47191 * 30.04105 * 1 2 3 30 30 H 1.09004 * 109.46672 * 150.04036 * 1 2 3 31 31 H 1.08001 * 126.07200 * 359.94576 * 3 2 1 32 32 H 1.07990 * 125.56844 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.47412 * 274.90177 * 6 5 4 34 34 H 1.09007 * 109.46980 * 34.90044 * 6 5 4 35 35 H 1.09002 * 109.46999 * 154.89343 * 6 5 4 36 36 H 0.96999 * 119.99860 * 354.82088 * 10 8 7 37 37 H 1.08996 * 109.47663 * 180.02562 * 13 11 10 38 38 H 1.09005 * 109.47207 * 300.00554 * 13 11 10 39 39 H 1.08999 * 109.47135 * 60.00194 * 13 11 10 40 40 H 1.09003 * 109.47023 * 175.00070 * 14 11 10 41 41 H 1.08996 * 109.47568 * 295.00117 * 14 11 10 42 42 H 0.96996 * 119.99987 * 359.97438 * 15 14 11 43 43 H 1.08994 * 109.47619 * 300.00416 * 18 16 15 44 44 H 1.09000 * 109.46977 * 60.00950 * 18 16 15 45 45 H 0.97000 * 120.00017 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 0.0006 5 7 3.6284 -0.6624 0.0061 6 6 4.8226 -1.5110 0.0139 7 6 2.3264 -1.1088 0.0006 8 6 1.8900 -2.5092 0.0014 9 8 1.5595 -3.0429 1.0440 10 7 1.8549 -3.2049 -1.1523 11 6 1.5290 -4.6331 -1.1370 12 1 1.9370 -5.0892 -0.2350 13 6 0.0093 -4.8096 -1.1551 14 6 2.1355 -5.3079 -2.3689 15 7 3.5746 -5.0377 -2.4148 16 6 4.3221 -5.5360 -3.4196 17 8 3.8033 -6.2077 -4.2859 18 6 5.8024 -5.2574 -3.4671 19 16 6.5200 -6.0559 -4.9244 20 6 8.2060 -5.5808 -4.7345 21 1 8.5040 -4.9714 -3.8941 22 6 9.1511 -5.9888 -5.6656 23 7 8.7879 -6.7311 -6.6902 24 14 10.9387 -5.4857 -5.4639 25 1 11.4573 -6.0076 -4.1740 26 1 11.7397 -6.0458 -6.5819 27 1 11.0403 -4.0042 -5.4753 28 1 -0.3634 0.0007 1.0276 29 1 -0.3633 0.8896 -0.5144 30 1 -0.3633 -0.8904 -0.5132 31 1 2.0136 2.1549 -0.0008 32 1 4.4972 1.3253 0.0003 33 1 5.1733 -1.6541 -1.0081 34 1 5.6049 -1.0320 0.6028 35 1 4.5781 -2.4782 0.4531 36 1 2.0455 -2.7600 -1.9929 37 1 -0.2333 -5.8722 -1.1432 38 1 -0.4228 -4.3288 -0.2775 39 1 -0.3987 -4.3535 -2.0571 40 1 1.9694 -6.3838 -2.3125 41 1 1.6629 -4.9140 -3.2686 42 1 3.9895 -4.5002 -1.7222 43 1 5.9681 -4.1817 -3.5241 44 1 6.2752 -5.6508 -2.5672 45 1 9.4484 -7.0165 -7.3407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295425884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:18 Heat of formation + Delta-G solvation = -31.850479 kcal Electronic energy + Delta-G solvation = -26736.037667 eV Core-core repulsion = 22880.499612 eV Total energy + Delta-G solvation = -3855.538055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.69307 -39.91457 -39.03556 -36.51533 -34.01171 -33.76327 -32.48787 -31.79219 -30.33532 -29.48183 -28.37045 -26.09757 -25.55366 -25.42144 -23.30485 -21.27309 -20.57530 -20.46096 -19.73819 -18.02945 -17.76953 -16.93887 -16.42556 -16.32060 -15.75232 -15.50172 -15.16349 -15.02578 -14.86044 -14.33486 -14.15043 -13.76805 -13.59824 -13.53967 -13.41935 -13.14562 -13.07526 -12.98068 -12.85285 -12.61326 -12.32204 -12.27339 -12.23919 -11.89660 -11.81415 -11.35356 -11.10985 -11.09071 -10.82635 -10.40531 -9.89399 -9.60983 -9.47892 -9.13009 -9.04621 -8.82647 -8.36642 -8.31536 -6.57046 -6.27421 -3.98748 1.58655 1.95520 2.55918 2.63465 2.88714 2.96674 3.03588 3.18508 3.22980 3.25616 3.60901 4.14501 4.27105 4.38929 4.46042 4.74724 4.76178 4.80079 4.90628 4.97065 5.04098 5.04451 5.07728 5.09430 5.29824 5.35941 5.42889 5.45935 5.49103 5.60180 5.69033 5.75853 5.77685 5.78353 5.87944 6.02365 6.05860 6.06771 6.43706 6.58724 6.75412 6.93400 7.07400 7.52308 7.54388 7.77890 8.28577 8.47820 9.17677 10.79928 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.002639 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.595425 B =10607.010927 C =12338.514338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.112 4.112 3 C -0.202 4.202 4 C 0.010 3.990 5 N -0.421 5.421 6 C 0.064 3.936 7 C -0.051 4.051 8 C 0.597 3.403 9 O -0.523 6.523 10 N -0.717 5.717 11 C 0.131 3.869 12 H 0.095 0.905 13 C -0.161 4.161 14 C 0.113 3.887 15 N -0.740 5.740 16 C 0.532 3.468 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.057 6.057 20 C -0.538 4.538 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.141 0.859 32 H 0.168 0.832 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.406 0.594 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.396 0.604 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.643 13.675 14.755 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C -0.226 4.226 4 C -0.124 4.124 5 N -0.096 5.096 6 C -0.077 4.077 7 C -0.164 4.164 8 C 0.381 3.619 9 O -0.397 6.397 10 N -0.370 5.370 11 C 0.027 3.973 12 H 0.113 0.887 13 C -0.220 4.220 14 C -0.012 4.012 15 N -0.395 5.395 16 C 0.318 3.682 17 O -0.387 6.387 18 C -0.304 4.304 19 S 0.169 5.831 20 C -0.686 4.686 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.185 0.815 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.241 0.759 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.229 0.771 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.369 11.756 13.889 23.818 hybrid contribution 2.215 1.638 1.054 2.950 sum -13.154 13.393 14.943 23.994 Atomic orbital electron populations 1.20191 0.89798 1.02078 1.01995 1.19755 0.95261 0.90979 1.05982 1.20681 0.91695 0.98501 1.11755 1.21919 0.99518 0.82421 1.08500 1.43821 1.04927 1.06374 1.54522 1.22210 0.85929 0.95391 1.04199 1.19958 0.84212 0.93277 1.18962 1.17117 0.77366 0.83756 0.83613 1.90854 1.47434 1.69561 1.31898 1.46230 1.71017 1.10206 1.09569 1.21320 0.96451 0.80190 0.99379 0.88660 1.22110 0.93936 1.02948 1.03020 1.21636 0.81150 1.01164 0.97223 1.45991 1.08207 1.56512 1.28839 1.20328 0.88599 0.78674 0.80620 1.90719 1.73490 1.37179 1.37334 1.23528 0.93855 1.05411 1.07637 1.85429 1.05211 1.67354 1.25103 1.22809 0.93125 1.38799 1.13851 0.91022 1.24993 0.99469 0.94628 0.94445 1.70002 1.34941 1.33397 1.11853 0.86225 0.82421 0.78879 0.77985 1.19935 1.20758 1.19937 0.91526 0.91418 0.92384 0.84117 0.81477 0.89819 0.89098 0.89793 0.75859 0.90937 0.91367 0.91855 0.89718 0.90732 0.77074 0.89389 0.89267 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.20 36.00 0.37 -0.34 16 2 C -0.11 -1.14 6.21 -104.16 -0.65 -1.79 16 3 C -0.20 -1.81 10.76 -39.98 -0.43 -2.24 16 4 C 0.01 0.08 11.38 -16.91 -0.19 -0.11 16 5 N -0.42 -3.81 3.16 -120.23 -0.38 -4.19 16 6 C 0.06 0.43 10.98 59.85 0.66 1.09 16 7 C -0.05 -0.54 6.63 -81.98 -0.54 -1.08 16 8 C 0.60 6.50 6.54 -12.86 -0.08 6.41 16 9 O -0.52 -7.42 16.78 5.19 0.09 -7.33 16 10 N -0.72 -6.13 4.51 -55.11 -0.25 -6.37 16 11 C 0.13 1.11 2.69 -67.93 -0.18 0.93 16 12 H 0.10 0.90 7.66 -51.93 -0.40 0.50 16 13 C -0.16 -1.23 9.48 37.16 0.35 -0.87 16 14 C 0.11 1.13 5.23 -4.04 -0.02 1.11 16 15 N -0.74 -8.77 5.39 -60.29 -0.32 -9.10 16 16 C 0.53 9.20 7.85 -10.99 -0.09 9.11 16 17 O -0.51 -11.02 15.86 5.55 0.09 -10.93 16 18 C -0.15 -2.91 6.16 36.00 0.22 -2.69 16 19 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 20 C -0.54 -14.89 9.50 30.94 0.29 -14.59 16 21 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.68 13.22 55.49 0.73 -24.94 16 24 Si 0.92 20.90 29.55 -169.99 -5.02 15.88 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.49 7.96 -51.93 -0.41 0.08 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.59 7.68 -51.93 -0.40 0.19 16 36 H 0.41 3.15 8.59 -40.82 -0.35 2.80 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.40 3.81 8.14 -40.82 -0.33 3.48 16 43 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 44 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 401.23 15.07 6.05 6.05 Total: -1.00 -36.24 401.23 -8.55 -44.79 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.93 Total: 2.96 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -0.39 Total: -3.09 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.22 Total: -44.60 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.18 Total: -18.26 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.24 -8.55 -44.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295425884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.942 kcal (2) G-P(sol) polarization free energy of solvation -36.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds