Wall clock time and date at job start Tue Mar 31 2020 23:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34657 * 125.80934 * 2 1 4 4 H 0.97006 * 124.84586 * 0.02562 * 3 2 1 5 5 C 1.36439 * 110.29993 * 180.29940 * 3 2 1 6 6 C 1.34481 * 108.85928 * 359.74301 * 5 3 2 7 7 C 1.36776 * 125.79637 * 179.86863 * 2 1 3 8 8 C 1.47260 * 126.94494 * 359.97438 * 7 2 1 9 9 O 1.21629 * 119.99894 * 359.71168 * 8 7 2 10 10 N 1.34771 * 120.00240 * 179.70992 * 8 7 2 11 11 C 1.46500 * 120.00026 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47129 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47217 * 305.00580 * 12 11 10 14 14 C 1.53008 * 109.46816 * 65.00299 * 12 11 10 15 15 C 1.52996 * 109.47336 * 184.99981 * 12 11 10 16 16 N 1.46498 * 109.47059 * 175.00083 * 15 12 11 17 17 C 1.34777 * 119.99828 * 179.72339 * 16 15 12 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 15 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 15 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46661 * 60.00586 * 25 23 21 27 27 H 1.48501 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47355 * 300.00441 * 25 23 21 29 29 H 1.09003 * 109.46820 * 270.13602 * 1 2 3 30 30 H 1.08997 * 109.46990 * 30.12820 * 1 2 3 31 31 H 1.08992 * 109.47514 * 150.13427 * 1 2 3 32 32 H 1.08002 * 125.56931 * 179.77401 * 5 3 2 33 33 H 1.08005 * 126.83590 * 180.02562 * 6 5 3 34 34 H 0.97004 * 119.99945 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.47000 * 60.00500 * 11 10 8 36 36 H 1.08996 * 109.47381 * 300.00104 * 11 10 8 37 37 H 1.09000 * 109.46973 * 59.99593 * 14 12 11 38 38 H 1.08995 * 109.47053 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.46930 * 299.99894 * 14 12 11 40 40 H 1.09004 * 109.47066 * 55.00351 * 15 12 11 41 41 H 1.08994 * 109.46974 * 295.00498 * 15 12 11 42 42 H 0.97001 * 120.00384 * 0.02562 * 16 15 12 43 43 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 44 44 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 45 45 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2949 1.0920 0.0000 4 1 1.9735 2.0073 0.0004 5 6 3.6096 0.7272 -0.0067 6 6 3.6882 -0.6153 -0.0054 7 6 2.3070 -1.1094 0.0025 8 6 1.8701 -2.5157 0.0063 9 8 0.6838 -2.7839 0.0127 10 7 2.7847 -3.5055 0.0026 11 6 2.3500 -4.9045 0.0069 12 6 3.5763 -5.8196 0.0007 13 1 4.2150 -5.5655 -0.8452 14 6 4.3573 -5.6345 1.3033 15 6 3.1249 -7.2765 -0.1205 16 7 4.2995 -8.1428 -0.2465 17 6 4.1439 -9.4766 -0.3615 18 8 3.0313 -9.9592 -0.3658 19 6 5.3525 -10.3684 -0.4848 20 16 4.8187 -12.0924 -0.6224 21 6 6.3853 -12.8884 -0.7504 22 1 7.2923 -12.3024 -0.7290 23 6 6.4540 -14.2689 -0.8777 24 7 5.3487 -14.9833 -0.9033 25 14 8.1149 -15.1128 -1.0141 26 1 8.9180 -14.8243 0.2013 27 1 7.9163 -16.5791 -1.1401 28 1 8.8308 -14.6060 -2.2123 29 1 -0.3633 0.0024 1.0277 30 1 -0.3633 0.8888 -0.5158 31 1 -0.3634 -0.8911 -0.5117 32 1 4.4498 1.4057 -0.0116 33 1 4.5889 -1.2112 -0.0092 34 1 3.7309 -3.2916 -0.0029 35 1 1.7467 -5.1002 -0.8796 36 1 1.7565 -5.0979 0.9004 37 1 3.7185 -5.8885 2.1492 38 1 5.2311 -6.2860 1.2988 39 1 4.6789 -4.5966 1.3897 40 1 2.4940 -7.3892 -1.0023 41 1 2.5601 -7.5570 0.7685 42 1 5.1895 -7.7569 -0.2428 43 1 5.9189 -10.0917 -1.3740 44 1 5.9816 -10.2517 0.3976 45 1 5.3967 -15.9479 -0.9926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297720691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:58 Heat of formation + Delta-G solvation = -46.998264 kcal Electronic energy + Delta-G solvation = -25261.641836 eV Core-core repulsion = 21405.446924 eV Total energy + Delta-G solvation = -3856.194912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.66538 -39.61793 -39.07082 -36.93459 -34.44520 -32.49973 -32.40625 -31.93328 -31.28254 -29.32572 -27.41239 -26.66072 -25.62130 -25.18850 -22.59073 -21.17792 -20.85012 -20.33213 -19.64767 -18.13623 -17.79181 -16.63823 -16.41390 -16.05817 -15.88504 -15.45466 -15.37990 -14.90816 -14.78900 -14.29835 -14.18644 -13.96439 -13.71163 -13.63218 -13.44095 -13.13635 -13.06569 -12.95216 -12.89293 -12.79154 -12.53540 -11.99851 -11.87771 -11.47626 -11.31132 -11.15763 -11.02892 -11.02541 -10.75515 -10.07727 -9.80781 -9.40608 -9.38250 -9.18420 -9.04771 -8.85687 -8.60883 -8.21846 -6.48090 -6.19806 -3.90426 1.38898 1.98127 2.61447 2.98236 3.13133 3.18775 3.24615 3.29283 3.30470 3.35250 3.76358 4.22138 4.37769 4.46026 4.51970 4.55904 4.61252 4.75865 4.79896 5.09250 5.11930 5.15132 5.17488 5.22672 5.38744 5.39641 5.43879 5.50800 5.56709 5.63353 5.67540 5.73864 5.80352 5.90800 5.95084 6.00742 6.15476 6.23166 6.30526 6.47420 6.63184 6.95702 7.35459 7.60702 7.72488 8.12172 8.36547 8.64258 9.25223 10.87559 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035229 B = 0.001483 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.619800 B =18873.407673 C =19492.960532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.107 3.893 3 N -0.554 5.554 4 H 0.416 0.584 5 C -0.017 4.017 6 C -0.169 4.169 7 C -0.238 4.238 8 C 0.591 3.409 9 O -0.550 6.550 10 N -0.724 5.724 11 C 0.128 3.872 12 C -0.115 4.115 13 H 0.084 0.916 14 C -0.150 4.150 15 C 0.129 3.871 16 N -0.737 5.737 17 C 0.531 3.469 18 O -0.517 6.517 19 C -0.153 4.153 20 S -0.060 6.060 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.170 0.830 33 H 0.145 0.855 34 H 0.399 0.601 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.151 36.310 2.754 36.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.011 4.011 3 N -0.149 5.149 4 H 0.253 0.747 5 C -0.144 4.144 6 C -0.193 4.193 7 C -0.248 4.248 8 C 0.380 3.620 9 O -0.429 6.429 10 N -0.376 5.376 11 C 0.004 3.996 12 C -0.134 4.134 13 H 0.102 0.898 14 C -0.207 4.207 15 C 0.004 3.996 16 N -0.393 5.393 17 C 0.317 3.683 18 O -0.391 6.391 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.187 0.813 33 H 0.162 0.838 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.970 35.222 2.740 35.676 hybrid contribution 3.380 0.801 -0.074 3.474 sum -1.591 36.023 2.665 36.156 Atomic orbital electron populations 1.20598 0.86889 1.04326 1.03593 1.20389 0.93811 0.85631 1.01241 1.41629 1.06308 1.08489 1.58510 0.74728 1.21738 0.85691 0.96506 1.10467 1.22030 0.95732 0.93731 1.07803 1.20122 0.93261 0.92046 1.19362 1.17321 0.85251 0.84051 0.75419 1.90754 1.16638 1.84440 1.51070 1.45720 1.09800 1.05817 1.76262 1.21264 0.95868 0.79367 1.03074 1.21594 0.97278 0.94708 0.99796 0.89764 1.21892 1.00484 1.01617 0.96735 1.21171 0.88548 0.87231 1.02668 1.45966 1.09314 1.06654 1.77320 1.20301 0.90998 0.81713 0.75288 1.90711 1.26325 1.74279 1.47759 1.23529 0.98739 1.03314 1.04810 1.85413 1.11608 0.90561 1.95735 1.22834 0.92682 0.94534 1.58462 0.90986 1.24988 0.97686 0.96294 0.94569 1.70008 1.26961 1.06793 1.46504 0.86228 0.82353 0.78145 0.78784 1.19956 1.20811 1.19960 0.90335 0.91819 0.87895 0.81317 0.83755 0.76594 0.90952 0.90905 0.91934 0.91969 0.92498 0.91237 0.91175 0.76866 0.89255 0.89258 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 9.88 36.01 0.36 -0.27 16 2 C 0.11 0.81 7.18 -81.88 -0.59 0.22 16 3 N -0.55 -2.59 5.90 -9.11 -0.05 -2.64 16 4 H 0.42 0.62 8.96 -40.82 -0.37 0.26 16 5 C -0.02 -0.08 11.89 -16.83 -0.20 -0.28 16 6 C -0.17 -1.08 10.56 -37.50 -0.40 -1.48 16 7 C -0.24 -2.13 6.29 -103.35 -0.65 -2.78 16 8 C 0.59 6.35 7.81 -12.60 -0.10 6.25 16 9 O -0.55 -7.62 14.82 5.25 0.08 -7.54 16 10 N -0.72 -5.96 5.28 -61.43 -0.32 -6.28 16 11 C 0.13 1.12 5.06 -4.04 -0.02 1.10 16 12 C -0.11 -0.87 2.46 -90.62 -0.22 -1.09 16 13 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 14 C -0.15 -1.03 8.94 37.16 0.33 -0.69 16 15 C 0.13 1.43 5.06 -4.04 -0.02 1.41 16 16 N -0.74 -9.44 5.28 -60.30 -0.32 -9.76 16 17 C 0.53 9.85 7.85 -10.98 -0.09 9.76 16 18 O -0.52 -11.83 15.86 5.55 0.09 -11.74 16 19 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 25 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.10 0.90 6.47 -51.93 -0.34 0.56 16 32 H 0.17 0.28 8.06 -52.49 -0.42 -0.14 16 33 H 0.14 0.62 7.70 -52.48 -0.40 0.22 16 34 H 0.40 2.35 6.78 -40.82 -0.28 2.07 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.42 7.18 -51.93 -0.37 0.05 16 39 H 0.06 0.31 7.18 -51.93 -0.37 -0.06 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.40 3.86 7.65 -40.82 -0.31 3.55 16 43 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 44 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -38.31 393.45 -8.91 -47.23 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.64 Total: 1.50 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.17 Total: -3.70 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.04 Total: -44.20 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.17 Total: -19.29 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.31 -8.91 -47.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297720691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.227 kcal (2) G-P(sol) polarization free energy of solvation -38.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds