Wall clock time and date at job start Tue Mar 31 2020 23:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34657 * 125.80934 * 2 1 4 4 H 0.97006 * 124.84586 * 0.02562 * 3 2 1 5 5 C 1.36439 * 110.29993 * 180.29940 * 3 2 1 6 6 C 1.34481 * 108.85928 * 359.74301 * 5 3 2 7 7 C 1.36776 * 125.79637 * 179.86863 * 2 1 3 8 8 C 1.47260 * 126.94494 * 359.97438 * 7 2 1 9 9 O 1.21629 * 119.99894 * 359.71168 * 8 7 2 10 10 N 1.34771 * 120.00240 * 179.70992 * 8 7 2 11 11 C 1.46500 * 120.00026 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47129 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47217 * 305.00580 * 12 11 10 14 14 C 1.53008 * 109.46816 * 65.00299 * 12 11 10 15 15 C 1.52996 * 109.47336 * 184.99981 * 12 11 10 16 16 N 1.46498 * 109.47059 * 175.00083 * 15 12 11 17 17 C 1.34777 * 119.99828 * 179.72339 * 16 15 12 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 15 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 15 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46661 * 60.00586 * 25 23 21 27 27 H 1.48501 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47355 * 300.00441 * 25 23 21 29 29 H 1.09003 * 109.46820 * 270.13602 * 1 2 3 30 30 H 1.08997 * 109.46990 * 30.12820 * 1 2 3 31 31 H 1.08992 * 109.47514 * 150.13427 * 1 2 3 32 32 H 1.08002 * 125.56931 * 179.77401 * 5 3 2 33 33 H 1.08005 * 126.83590 * 180.02562 * 6 5 3 34 34 H 0.97004 * 119.99945 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.47000 * 60.00500 * 11 10 8 36 36 H 1.08996 * 109.47381 * 300.00104 * 11 10 8 37 37 H 1.09000 * 109.46973 * 59.99593 * 14 12 11 38 38 H 1.08995 * 109.47053 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.46930 * 299.99894 * 14 12 11 40 40 H 1.09004 * 109.47066 * 55.00351 * 15 12 11 41 41 H 1.08994 * 109.46974 * 295.00498 * 15 12 11 42 42 H 0.97001 * 120.00384 * 0.02562 * 16 15 12 43 43 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 44 44 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 45 45 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2949 1.0920 0.0000 4 1 1.9735 2.0073 0.0004 5 6 3.6096 0.7272 -0.0067 6 6 3.6882 -0.6153 -0.0054 7 6 2.3070 -1.1094 0.0025 8 6 1.8701 -2.5157 0.0063 9 8 0.6838 -2.7839 0.0127 10 7 2.7847 -3.5055 0.0026 11 6 2.3500 -4.9045 0.0069 12 6 3.5763 -5.8196 0.0007 13 1 4.2150 -5.5655 -0.8452 14 6 4.3573 -5.6345 1.3033 15 6 3.1249 -7.2765 -0.1205 16 7 4.2995 -8.1428 -0.2465 17 6 4.1439 -9.4766 -0.3615 18 8 3.0313 -9.9592 -0.3658 19 6 5.3525 -10.3684 -0.4848 20 16 4.8187 -12.0924 -0.6224 21 6 6.3853 -12.8884 -0.7504 22 1 7.2923 -12.3024 -0.7290 23 6 6.4540 -14.2689 -0.8777 24 7 5.3487 -14.9833 -0.9033 25 14 8.1149 -15.1128 -1.0141 26 1 8.9180 -14.8243 0.2013 27 1 7.9163 -16.5791 -1.1401 28 1 8.8308 -14.6060 -2.2123 29 1 -0.3633 0.0024 1.0277 30 1 -0.3633 0.8888 -0.5158 31 1 -0.3634 -0.8911 -0.5117 32 1 4.4498 1.4057 -0.0116 33 1 4.5889 -1.2112 -0.0092 34 1 3.7309 -3.2916 -0.0029 35 1 1.7467 -5.1002 -0.8796 36 1 1.7565 -5.0979 0.9004 37 1 3.7185 -5.8885 2.1492 38 1 5.2311 -6.2860 1.2988 39 1 4.6789 -4.5966 1.3897 40 1 2.4940 -7.3892 -1.0023 41 1 2.5601 -7.5570 0.7685 42 1 5.1895 -7.7569 -0.2428 43 1 5.9189 -10.0917 -1.3740 44 1 5.9816 -10.2517 0.3976 45 1 5.3967 -15.9479 -0.9926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297720691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:57 Heat of formation + Delta-G solvation = -75.911016 kcal Electronic energy + Delta-G solvation = -25262.895587 eV Core-core repulsion = 21405.446924 eV Total energy + Delta-G solvation = -3857.448663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.13139 -40.73914 -40.10654 -37.89271 -35.50213 -34.56634 -33.45048 -32.42583 -31.86669 -30.75398 -28.03025 -27.72379 -27.25384 -26.20883 -23.27531 -21.82175 -21.71430 -21.37513 -20.42392 -19.73920 -18.56987 -17.79718 -17.54032 -16.91180 -16.86234 -16.79221 -16.53704 -16.37930 -15.76834 -15.68169 -15.08597 -14.81763 -14.71990 -14.43886 -14.34304 -14.14428 -14.02442 -13.85041 -13.61716 -13.54633 -13.41451 -13.28876 -13.15149 -12.84666 -12.62344 -12.47162 -12.16901 -12.12791 -11.84702 -11.72372 -11.11097 -10.99851 -10.86263 -10.25482 -10.13973 -10.09010 -9.69953 -9.08561 -8.65089 -8.32636 -6.11016 0.76897 1.28426 1.45530 1.48465 1.57972 1.58020 1.63954 2.07166 2.28971 2.34658 2.60104 2.63537 3.01435 3.34291 3.72277 3.81188 3.88481 3.93828 4.04334 4.11986 4.30706 4.32799 4.35647 4.42416 4.53537 4.53777 4.67972 4.72129 4.78734 4.78926 4.91023 4.98321 4.99635 5.08731 5.17643 5.30181 5.35221 5.43289 5.46715 5.53894 5.83327 6.01097 6.21363 6.53125 6.62616 6.74212 7.08417 7.27538 7.38919 8.76341 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035229 B = 0.001483 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.619800 B =18873.407673 C =19492.960532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.094 3.906 3 N -0.541 5.541 4 H 0.432 0.568 5 C -0.006 4.006 6 C -0.184 4.184 7 C -0.271 4.271 8 C 0.582 3.418 9 O -0.593 6.593 10 N -0.711 5.711 11 C 0.132 3.868 12 C -0.094 4.094 13 H 0.106 0.894 14 C -0.149 4.149 15 C 0.127 3.873 16 N -0.707 5.707 17 C 0.532 3.468 18 O -0.568 6.568 19 C -0.128 4.128 20 S -0.155 6.155 21 C -0.547 4.547 22 H 0.084 0.916 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.261 1.261 27 H -0.280 1.280 28 H -0.262 1.262 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.205 0.795 33 H 0.163 0.837 34 H 0.413 0.587 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.417 0.583 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.286 39.245 2.794 39.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.025 4.025 3 N -0.138 5.138 4 H 0.272 0.728 5 C -0.133 4.133 6 C -0.208 4.208 7 C -0.281 4.281 8 C 0.372 3.628 9 O -0.476 6.476 10 N -0.363 5.363 11 C 0.007 3.993 12 C -0.113 4.113 13 H 0.125 0.875 14 C -0.207 4.207 15 C 0.002 3.998 16 N -0.362 5.362 17 C 0.318 3.682 18 O -0.447 6.447 19 C -0.280 4.280 20 S 0.072 5.928 21 C -0.695 4.695 22 H 0.102 0.898 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.186 1.186 27 H -0.205 1.205 28 H -0.186 1.186 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.222 0.778 33 H 0.181 0.819 34 H 0.250 0.750 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.255 0.745 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.466 38.245 2.785 38.374 hybrid contribution 2.273 0.074 -0.072 2.275 sum 0.808 38.319 2.713 38.424 Atomic orbital electron populations 1.20522 0.86840 1.04167 1.03562 1.20511 0.94252 0.86371 1.01404 1.41654 1.06196 1.08708 1.57193 0.72842 1.22338 0.86291 0.96590 1.08106 1.22318 0.95109 0.94755 1.08589 1.20232 0.95196 0.91276 1.21429 1.17768 0.84915 0.85311 0.74785 1.90726 1.18429 1.85189 1.53250 1.45564 1.10284 1.05061 1.75348 1.21136 0.96219 0.80078 1.01872 1.21412 0.96911 0.91566 1.01407 0.87546 1.21907 1.00209 1.03110 0.95434 1.21268 0.87771 0.89025 1.01707 1.45649 1.11061 1.04729 1.74762 1.20096 0.89622 0.83271 0.75231 1.90703 1.27875 1.75541 1.50561 1.23367 0.99610 0.98146 1.06837 1.85628 1.13854 0.97221 1.96124 1.23189 0.92776 0.95214 1.58324 0.89753 1.26138 1.02123 0.97098 0.93792 1.70184 1.29810 1.07118 1.47726 0.84997 0.76776 0.76690 0.79484 1.18596 1.20510 1.18620 0.90319 0.89257 0.90698 0.77788 0.81937 0.74953 0.92300 0.92249 0.93104 0.91226 0.90506 0.92296 0.92358 0.74466 0.87038 0.87012 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 9.88 71.24 0.70 -0.52 16 2 C 0.09 1.34 7.18 41.78 0.30 1.64 16 3 N -0.54 -3.77 5.90 -182.73 -1.08 -4.85 16 4 H 0.43 0.09 8.96 -92.70 -0.83 -0.74 16 5 C -0.01 -0.04 11.89 83.12 0.99 0.95 16 6 C -0.18 -1.93 10.56 23.62 0.25 -1.68 16 7 C -0.27 -4.69 6.29 -19.04 -0.12 -4.81 16 8 C 0.58 12.77 7.81 86.62 0.68 13.44 16 9 O -0.59 -17.53 14.82 -4.12 -0.06 -17.59 16 10 N -0.71 -11.20 5.28 -466.52 -2.46 -13.66 16 11 C 0.13 2.28 5.06 86.38 0.44 2.72 16 12 C -0.09 -1.25 2.46 -10.79 -0.03 -1.28 16 13 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 14 C -0.15 -1.66 8.94 71.98 0.64 -1.02 16 15 C 0.13 2.74 5.06 86.38 0.44 3.18 16 16 N -0.71 -16.82 5.28 -463.07 -2.45 -19.27 16 17 C 0.53 19.43 7.85 87.66 0.69 20.12 16 18 O -0.57 -26.73 15.86 -3.04 -0.05 -26.77 16 19 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 20 S -0.16 -8.67 20.57 -56.49 -1.16 -9.83 16 21 C -0.55 -31.20 9.50 67.96 0.65 -30.56 16 22 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 23 C 0.01 0.75 5.49 84.86 0.47 1.22 16 24 N -0.91 -56.32 13.22 21.65 0.29 -56.04 16 25 Si 1.00 43.44 29.55 68.60 2.03 45.47 16 26 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 27 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 28 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 1.44 6.47 -2.39 -0.02 1.42 16 32 H 0.21 -0.27 8.06 -2.91 -0.02 -0.29 16 33 H 0.16 0.91 7.70 -2.91 -0.02 0.89 16 34 H 0.41 4.01 6.78 -92.71 -0.63 3.38 16 35 H 0.06 1.19 8.14 -2.38 -0.02 1.18 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.70 7.18 -2.39 -0.02 0.69 16 39 H 0.08 0.59 7.18 -2.39 -0.02 0.57 16 40 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.42 6.68 7.65 -92.71 -0.71 5.97 16 43 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 44 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 45 H 0.27 15.56 8.31 -92.72 -0.77 14.79 16 Total: -1.00 -88.18 393.45 0.45 -87.73 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -1.13 Total: 15.95 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 6.53 Total: -1.15 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -5.70 Total: -93.81 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -0.11 Total: -44.36 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -88.18 0.45 -87.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297720691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.822 kcal (2) G-P(sol) polarization free energy of solvation -88.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds