Wall clock time and date at job start Tue Mar 31 2020 23:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34653 * 125.80402 * 2 1 4 4 H 0.97008 * 124.84887 * 0.02562 * 3 2 1 5 5 C 1.36443 * 110.30202 * 180.29745 * 3 2 1 6 6 C 1.34496 * 108.85178 * 359.74866 * 5 3 2 7 7 C 1.36771 * 125.79775 * 179.86944 * 2 1 3 8 8 C 1.47255 * 126.94215 * 359.97438 * 7 2 1 9 9 O 1.21633 * 120.00379 * 359.71509 * 8 7 2 10 10 N 1.34784 * 119.99921 * 179.71080 * 8 7 2 11 11 C 1.46493 * 119.99864 * 179.72827 * 10 8 7 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.47100 * 54.99323 * 12 11 10 14 14 C 1.53007 * 109.46806 * 294.99611 * 12 11 10 15 15 C 1.52997 * 109.47519 * 175.00001 * 12 11 10 16 16 N 1.46499 * 109.47484 * 184.99863 * 15 12 11 17 17 C 1.34777 * 120.00236 * 179.97438 * 16 15 12 18 18 O 1.21287 * 119.99690 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99904 * 179.97438 * 17 16 15 20 20 S 1.81005 * 109.46812 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99859 * 180.02562 * 20 19 17 22 22 H 1.08001 * 120.00126 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00261 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99686 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00264 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47064 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47237 * 120.00016 * 25 23 21 28 28 H 1.48506 * 109.46598 * 240.00148 * 25 23 21 29 29 H 1.09001 * 109.46882 * 270.13529 * 1 2 3 30 30 H 1.09004 * 109.46627 * 30.13012 * 1 2 3 31 31 H 1.08993 * 109.47342 * 150.13044 * 1 2 3 32 32 H 1.07992 * 125.57697 * 179.77579 * 5 3 2 33 33 H 1.07997 * 126.83361 * 180.02562 * 6 5 3 34 34 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 35 35 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 36 36 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 37 37 H 1.08996 * 109.46781 * 179.97438 * 14 12 11 38 38 H 1.08999 * 109.47056 * 299.99739 * 14 12 11 39 39 H 1.08995 * 109.47177 * 60.00033 * 14 12 11 40 40 H 1.09007 * 109.47118 * 304.99691 * 15 12 11 41 41 H 1.09002 * 109.47058 * 64.99320 * 15 12 11 42 42 H 0.97000 * 119.99692 * 359.97438 * 16 15 12 43 43 H 1.09003 * 109.47121 * 299.99901 * 19 17 16 44 44 H 1.09000 * 109.46909 * 60.00188 * 19 17 16 45 45 H 0.97000 * 120.00033 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6096 0.7274 -0.0066 6 6 3.6882 -0.6152 -0.0055 7 6 2.3071 -1.1093 0.0025 8 6 1.8701 -2.5156 0.0063 9 8 0.6838 -2.7839 0.0126 10 7 2.7849 -3.5055 0.0025 11 6 2.3502 -4.9044 0.0123 12 6 3.5764 -5.8195 0.0062 13 1 4.2271 -5.5606 0.8415 14 6 4.3389 -5.6417 -1.3084 15 6 3.1269 -7.2756 0.1420 16 7 4.3033 -8.1413 0.2562 17 6 4.1493 -9.4738 0.3870 18 8 3.0367 -9.9563 0.4097 19 6 5.3594 -10.3643 0.5038 20 16 4.8275 -12.0869 0.6646 21 6 6.3957 -12.8817 0.7808 22 1 7.3022 -12.2959 0.7424 23 6 6.4662 -14.2608 0.9215 24 7 5.3613 -14.9748 0.9688 25 14 8.1288 -15.1033 1.0454 26 1 9.2068 -14.0850 0.9672 27 1 8.2224 -15.8258 2.3394 28 1 8.2787 -16.0691 -0.0728 29 1 -0.3633 0.0024 1.0277 30 1 -0.3633 0.8889 -0.5159 31 1 -0.3634 -0.8911 -0.5118 32 1 4.4497 1.4059 -0.0116 33 1 4.5889 -1.2111 -0.0092 34 1 3.7310 -3.2915 -0.0022 35 1 1.7595 -5.0952 0.9083 36 1 1.7440 -5.1028 -0.8716 37 1 5.2127 -6.2932 -1.3125 38 1 3.6882 -5.9005 -2.1437 39 1 4.6592 -4.6043 -1.4052 40 1 2.5087 -7.3834 1.0333 41 1 2.5496 -7.5612 -0.7373 42 1 5.1930 -7.7554 0.2376 43 1 5.9770 -10.2568 -0.3879 44 1 5.9373 -10.0785 1.3827 45 1 5.4105 -15.9385 1.0668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297720692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:02 Heat of formation + Delta-G solvation = -47.126832 kcal Electronic energy + Delta-G solvation = -25261.641401 eV Core-core repulsion = 21405.440914 eV Total energy + Delta-G solvation = -3856.200487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.66528 -39.61708 -39.07008 -36.93422 -34.44478 -32.50011 -32.40961 -31.93288 -31.28276 -29.32633 -27.41146 -26.66049 -25.62470 -25.19042 -22.59111 -21.17860 -20.85029 -20.33235 -19.64738 -18.13626 -17.79504 -16.63695 -16.41535 -16.05866 -15.88271 -15.46465 -15.36960 -14.91702 -14.79334 -14.25940 -14.22114 -13.96585 -13.71351 -13.64983 -13.42504 -13.11586 -13.07023 -12.95214 -12.88632 -12.81355 -12.54071 -11.99642 -11.87827 -11.47526 -11.31181 -11.15720 -11.06023 -11.00511 -10.74581 -10.07778 -9.79179 -9.40553 -9.38359 -9.18394 -9.06561 -8.85731 -8.60867 -8.21155 -6.48276 -6.20463 -3.90813 1.38884 1.98067 2.61435 2.98195 3.13058 3.18842 3.22473 3.30165 3.30449 3.36188 3.76350 4.21536 4.37751 4.46029 4.51978 4.55933 4.61302 4.75784 4.79926 5.09220 5.11933 5.14770 5.17424 5.22803 5.38715 5.39633 5.43903 5.50855 5.56634 5.63367 5.67501 5.73771 5.80302 5.90769 5.95085 6.00774 6.15406 6.23191 6.30511 6.47403 6.63166 6.95675 7.35433 7.61062 7.72469 8.12147 8.36644 8.64225 9.24958 10.87036 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035166 B = 0.001483 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.032337 B =18871.962074 C =19489.937242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.107 3.893 3 N -0.554 5.554 4 H 0.416 0.584 5 C -0.017 4.017 6 C -0.169 4.169 7 C -0.238 4.238 8 C 0.590 3.410 9 O -0.550 6.550 10 N -0.724 5.724 11 C 0.128 3.872 12 C -0.115 4.115 13 H 0.084 0.916 14 C -0.150 4.150 15 C 0.129 3.871 16 N -0.737 5.737 17 C 0.531 3.469 18 O -0.517 6.517 19 C -0.153 4.153 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.170 0.830 33 H 0.145 0.855 34 H 0.399 0.601 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.183 36.311 -3.052 36.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.011 4.011 3 N -0.149 5.149 4 H 0.253 0.747 5 C -0.144 4.144 6 C -0.193 4.193 7 C -0.248 4.248 8 C 0.380 3.620 9 O -0.429 6.429 10 N -0.376 5.376 11 C 0.004 3.996 12 C -0.134 4.134 13 H 0.102 0.898 14 C -0.207 4.207 15 C 0.004 3.996 16 N -0.393 5.393 17 C 0.317 3.683 18 O -0.391 6.391 19 C -0.304 4.304 20 S 0.166 5.834 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.187 0.813 33 H 0.162 0.838 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.997 35.232 -2.994 35.711 hybrid contribution 3.366 0.786 0.069 3.457 sum -1.631 36.018 -2.925 36.174 Atomic orbital electron populations 1.20600 0.86889 1.04310 1.03607 1.20388 0.93813 0.85631 1.01240 1.41629 1.06309 1.08489 1.58505 0.74727 1.21741 0.85689 0.96506 1.10471 1.22032 0.95731 0.93729 1.07801 1.20118 0.93262 0.92045 1.19364 1.17324 0.85251 0.84051 0.75416 1.90755 1.16638 1.84439 1.51067 1.45721 1.09799 1.05815 1.76266 1.21263 0.95872 0.79369 1.03068 1.21593 0.97342 0.94718 0.99721 0.89772 1.21890 1.00593 1.01631 0.96607 1.21173 0.88518 0.87252 1.02678 1.45967 1.09249 1.06777 1.77262 1.20302 0.91015 0.81702 0.75282 1.90713 1.26371 1.74215 1.47777 1.23527 0.98712 1.03305 1.04830 1.85421 1.11605 0.90781 1.95592 1.22914 0.92657 0.94662 1.58124 0.90882 1.24993 0.97699 0.96314 0.94586 1.70031 1.26887 1.06739 1.46607 0.86117 0.82246 0.79205 0.77918 1.19636 1.20574 1.20578 0.90322 0.91824 0.87902 0.81315 0.83755 0.76595 0.90969 0.90892 0.91972 0.91934 0.92495 0.91242 0.91171 0.76866 0.89251 0.89251 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 9.88 36.01 0.36 -0.27 16 2 C 0.11 0.81 7.17 -81.88 -0.59 0.22 16 3 N -0.55 -2.59 5.90 -9.11 -0.05 -2.64 16 4 H 0.42 0.62 8.96 -40.82 -0.37 0.25 16 5 C -0.02 -0.08 11.89 -16.82 -0.20 -0.28 16 6 C -0.17 -1.08 10.56 -37.50 -0.40 -1.48 16 7 C -0.24 -2.13 6.29 -103.35 -0.65 -2.78 16 8 C 0.59 6.34 7.81 -12.59 -0.10 6.25 16 9 O -0.55 -7.62 14.82 5.25 0.08 -7.54 16 10 N -0.72 -5.96 5.28 -61.43 -0.32 -6.28 16 11 C 0.13 1.12 5.06 -4.04 -0.02 1.10 16 12 C -0.11 -0.87 2.46 -90.62 -0.22 -1.09 16 13 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 14 C -0.15 -1.02 8.94 37.16 0.33 -0.69 16 15 C 0.13 1.43 5.06 -4.04 -0.02 1.41 16 16 N -0.74 -9.44 5.28 -60.29 -0.32 -9.76 16 17 C 0.53 9.85 7.85 -10.99 -0.09 9.76 16 18 O -0.52 -11.83 15.86 5.55 0.09 -11.74 16 19 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 20 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 21 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 22 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 25 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.10 0.90 6.47 -51.93 -0.34 0.56 16 32 H 0.17 0.28 8.06 -52.49 -0.42 -0.14 16 33 H 0.14 0.62 7.69 -52.49 -0.40 0.22 16 34 H 0.40 2.35 6.79 -40.82 -0.28 2.07 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.42 7.18 -51.93 -0.37 0.05 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.31 7.19 -51.93 -0.37 -0.06 16 40 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.40 3.86 7.65 -40.82 -0.31 3.55 16 43 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 393.46 15.07 5.93 5.93 Total: -1.00 -38.36 393.46 -8.91 -47.28 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.64 Total: 1.42 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.17 Total: -3.68 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.04 Total: -44.20 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.17 Total: -19.28 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.36 -8.91 -47.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297720692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.151 kcal (2) G-P(sol) polarization free energy of solvation -38.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds