Wall clock time and date at job start Tue Mar 31 2020 23:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34653 * 125.80402 * 2 1 4 4 H 0.97008 * 124.84887 * 0.02562 * 3 2 1 5 5 C 1.36443 * 110.30202 * 180.29745 * 3 2 1 6 6 C 1.34496 * 108.85178 * 359.74866 * 5 3 2 7 7 C 1.36771 * 125.79775 * 179.86944 * 2 1 3 8 8 C 1.47255 * 126.94215 * 359.97438 * 7 2 1 9 9 O 1.21633 * 120.00379 * 359.71509 * 8 7 2 10 10 N 1.34784 * 119.99921 * 179.71080 * 8 7 2 11 11 C 1.46493 * 119.99864 * 179.72827 * 10 8 7 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.47100 * 54.99323 * 12 11 10 14 14 C 1.53007 * 109.46806 * 294.99611 * 12 11 10 15 15 C 1.52997 * 109.47519 * 175.00001 * 12 11 10 16 16 N 1.46499 * 109.47484 * 184.99863 * 15 12 11 17 17 C 1.34777 * 120.00236 * 179.97438 * 16 15 12 18 18 O 1.21287 * 119.99690 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99904 * 179.97438 * 17 16 15 20 20 S 1.81005 * 109.46812 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99859 * 180.02562 * 20 19 17 22 22 H 1.08001 * 120.00126 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00261 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99686 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00264 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47064 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47237 * 120.00016 * 25 23 21 28 28 H 1.48506 * 109.46598 * 240.00148 * 25 23 21 29 29 H 1.09001 * 109.46882 * 270.13529 * 1 2 3 30 30 H 1.09004 * 109.46627 * 30.13012 * 1 2 3 31 31 H 1.08993 * 109.47342 * 150.13044 * 1 2 3 32 32 H 1.07992 * 125.57697 * 179.77579 * 5 3 2 33 33 H 1.07997 * 126.83361 * 180.02562 * 6 5 3 34 34 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 35 35 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 36 36 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 37 37 H 1.08996 * 109.46781 * 179.97438 * 14 12 11 38 38 H 1.08999 * 109.47056 * 299.99739 * 14 12 11 39 39 H 1.08995 * 109.47177 * 60.00033 * 14 12 11 40 40 H 1.09007 * 109.47118 * 304.99691 * 15 12 11 41 41 H 1.09002 * 109.47058 * 64.99320 * 15 12 11 42 42 H 0.97000 * 119.99692 * 359.97438 * 16 15 12 43 43 H 1.09003 * 109.47121 * 299.99901 * 19 17 16 44 44 H 1.09000 * 109.46909 * 60.00188 * 19 17 16 45 45 H 0.97000 * 120.00033 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6096 0.7274 -0.0066 6 6 3.6882 -0.6152 -0.0055 7 6 2.3071 -1.1093 0.0025 8 6 1.8701 -2.5156 0.0063 9 8 0.6838 -2.7839 0.0126 10 7 2.7849 -3.5055 0.0025 11 6 2.3502 -4.9044 0.0123 12 6 3.5764 -5.8195 0.0062 13 1 4.2271 -5.5606 0.8415 14 6 4.3389 -5.6417 -1.3084 15 6 3.1269 -7.2756 0.1420 16 7 4.3033 -8.1413 0.2562 17 6 4.1493 -9.4738 0.3870 18 8 3.0367 -9.9563 0.4097 19 6 5.3594 -10.3643 0.5038 20 16 4.8275 -12.0869 0.6646 21 6 6.3957 -12.8817 0.7808 22 1 7.3022 -12.2959 0.7424 23 6 6.4662 -14.2608 0.9215 24 7 5.3613 -14.9748 0.9688 25 14 8.1288 -15.1033 1.0454 26 1 9.2068 -14.0850 0.9672 27 1 8.2224 -15.8258 2.3394 28 1 8.2787 -16.0691 -0.0728 29 1 -0.3633 0.0024 1.0277 30 1 -0.3633 0.8889 -0.5159 31 1 -0.3634 -0.8911 -0.5118 32 1 4.4497 1.4059 -0.0116 33 1 4.5889 -1.2111 -0.0092 34 1 3.7310 -3.2915 -0.0022 35 1 1.7595 -5.0952 0.9083 36 1 1.7440 -5.1028 -0.8716 37 1 5.2127 -6.2932 -1.3125 38 1 3.6882 -5.9005 -2.1437 39 1 4.6592 -4.6043 -1.4052 40 1 2.5087 -7.3834 1.0333 41 1 2.5496 -7.5612 -0.7373 42 1 5.1930 -7.7554 0.2376 43 1 5.9770 -10.2568 -0.3879 44 1 5.9373 -10.0785 1.3827 45 1 5.4105 -15.9385 1.0668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297720692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:01 Heat of formation + Delta-G solvation = -76.080149 kcal Electronic energy + Delta-G solvation = -25262.896911 eV Core-core repulsion = 21405.440914 eV Total energy + Delta-G solvation = -3857.455997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.13115 -40.73830 -40.10540 -37.89207 -35.50153 -34.57044 -33.45045 -32.42521 -31.86690 -30.75438 -28.02911 -27.73002 -27.25415 -26.20852 -23.27552 -21.82113 -21.71524 -21.37552 -20.42371 -19.74357 -18.56968 -17.79756 -17.54069 -16.91018 -16.86983 -16.79285 -16.53724 -16.37793 -15.78002 -15.67404 -15.08428 -14.83231 -14.70887 -14.44248 -14.34999 -14.14499 -14.00904 -13.85717 -13.58800 -13.57056 -13.41552 -13.29703 -13.14310 -12.90061 -12.59403 -12.46814 -12.16405 -12.12885 -11.84601 -11.69003 -11.14592 -10.99942 -10.86263 -10.24834 -10.13920 -10.08996 -9.69940 -9.08537 -8.65245 -8.33355 -6.11411 0.76886 1.28495 1.42769 1.48634 1.57971 1.59488 1.63922 2.07162 2.28250 2.34628 2.60050 2.63582 3.01030 3.34053 3.72304 3.81205 3.88533 3.93825 4.04295 4.12000 4.30694 4.32769 4.35694 4.42436 4.53530 4.53759 4.67962 4.72161 4.78790 4.78933 4.91013 4.98436 4.99676 5.08727 5.17651 5.30201 5.35332 5.43651 5.46737 5.53931 5.83320 6.01095 6.21538 6.53121 6.62605 6.74202 7.08118 7.27531 7.38914 8.76176 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035166 B = 0.001483 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.032337 B =18871.962074 C =19489.937242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.094 3.906 3 N -0.541 5.541 4 H 0.432 0.568 5 C -0.006 4.006 6 C -0.184 4.184 7 C -0.271 4.271 8 C 0.582 3.418 9 O -0.593 6.593 10 N -0.711 5.711 11 C 0.132 3.868 12 C -0.094 4.094 13 H 0.106 0.894 14 C -0.149 4.149 15 C 0.127 3.873 16 N -0.707 5.707 17 C 0.532 3.468 18 O -0.568 6.568 19 C -0.128 4.128 20 S -0.156 6.156 21 C -0.545 4.545 22 H 0.084 0.916 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 1.000 3.000 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.205 0.795 33 H 0.163 0.837 34 H 0.413 0.587 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.417 0.583 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.243 39.247 -3.141 39.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.025 4.025 3 N -0.137 5.137 4 H 0.272 0.728 5 C -0.133 4.133 6 C -0.208 4.208 7 C -0.281 4.281 8 C 0.372 3.628 9 O -0.476 6.476 10 N -0.363 5.363 11 C 0.007 3.993 12 C -0.113 4.113 13 H 0.124 0.876 14 C -0.207 4.207 15 C 0.002 3.998 16 N -0.362 5.362 17 C 0.318 3.682 18 O -0.447 6.447 19 C -0.279 4.279 20 S 0.071 5.929 21 C -0.693 4.693 22 H 0.102 0.898 23 C -0.192 4.192 24 N -0.549 5.549 25 Si 0.821 3.179 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.200 1.200 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.222 0.778 33 H 0.181 0.819 34 H 0.250 0.750 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.255 0.745 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.504 38.255 -3.092 38.409 hybrid contribution 2.262 0.056 0.080 2.264 sum 0.758 38.311 -3.012 38.437 Atomic orbital electron populations 1.20524 0.86839 1.04178 1.03550 1.20510 0.94254 0.86370 1.01405 1.41654 1.06197 1.08709 1.57188 0.72841 1.22341 0.86289 0.96589 1.08110 1.22319 0.95108 0.94753 1.08588 1.20228 0.95196 0.91275 1.21429 1.17771 0.84915 0.85311 0.74782 1.90727 1.18429 1.85188 1.53248 1.45565 1.10282 1.05059 1.75352 1.21136 0.96224 0.80080 1.01866 1.21412 0.96983 0.91581 1.01319 0.87555 1.21905 1.00325 1.03118 0.95303 1.21270 0.87735 0.89042 1.01724 1.45649 1.10999 1.04853 1.74697 1.20095 0.89636 0.83257 0.75230 1.90704 1.27918 1.75480 1.50579 1.23366 0.99588 0.98151 1.06839 1.85635 1.13827 0.97423 1.95995 1.23250 0.92708 0.95322 1.58002 0.89756 1.26139 1.02132 0.97115 0.93816 1.70198 1.29746 1.07153 1.47790 0.84892 0.76908 0.78049 0.78003 1.17883 1.20011 1.20010 0.90357 0.89239 0.90677 0.77788 0.81939 0.74954 0.92321 0.92230 0.91228 0.93099 0.90510 0.92308 0.92346 0.74468 0.87012 0.87031 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 9.88 71.24 0.70 -0.52 16 2 C 0.09 1.34 7.17 41.78 0.30 1.64 16 3 N -0.54 -3.77 5.90 -182.72 -1.08 -4.84 16 4 H 0.43 0.09 8.96 -92.70 -0.83 -0.74 16 5 C -0.01 -0.04 11.89 83.12 0.99 0.95 16 6 C -0.18 -1.93 10.56 23.62 0.25 -1.68 16 7 C -0.27 -4.69 6.29 -19.04 -0.12 -4.80 16 8 C 0.58 12.76 7.81 86.61 0.68 13.44 16 9 O -0.59 -17.52 14.82 -4.13 -0.06 -17.59 16 10 N -0.71 -11.19 5.28 -466.51 -2.46 -13.66 16 11 C 0.13 2.28 5.06 86.38 0.44 2.72 16 12 C -0.09 -1.25 2.46 -10.79 -0.03 -1.28 16 13 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 14 C -0.15 -1.66 8.94 71.98 0.64 -1.02 16 15 C 0.13 2.74 5.06 86.38 0.44 3.18 16 16 N -0.71 -16.82 5.28 -463.05 -2.45 -19.26 16 17 C 0.53 19.43 7.85 87.66 0.69 20.11 16 18 O -0.57 -26.72 15.86 -3.05 -0.05 -26.77 16 19 C -0.13 -4.99 6.16 71.23 0.44 -4.55 16 20 S -0.16 -8.69 20.57 -56.49 -1.16 -9.86 16 21 C -0.55 -31.07 9.50 67.95 0.65 -30.43 16 22 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 23 C 0.01 0.72 5.49 84.86 0.47 1.18 16 24 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 25 Si 1.00 43.52 29.55 68.60 2.03 45.55 16 26 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.07 1.44 6.47 -2.39 -0.02 1.42 16 32 H 0.21 -0.27 8.06 -2.91 -0.02 -0.29 16 33 H 0.16 0.91 7.69 -2.91 -0.02 0.89 16 34 H 0.41 4.00 6.79 -92.71 -0.63 3.38 16 35 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.07 0.70 7.18 -2.39 -0.02 0.68 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 0.59 7.19 -2.39 -0.02 0.57 16 40 H 0.06 1.44 8.14 -2.38 -0.02 1.43 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.42 6.68 7.65 -92.71 -0.71 5.97 16 43 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 44 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 45 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -88.25 393.46 0.45 -87.80 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -1.13 Total: 15.72 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 6.53 Total: -1.06 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -5.70 Total: -93.81 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -0.11 Total: -44.35 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.86 kcal Total: -88.25 0.45 -87.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297720692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.720 kcal (2) G-P(sol) polarization free energy of solvation -88.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds