Wall clock time and date at job start Tue Mar 31 2020 22:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86791 * 120.00140 * 2 1 4 4 H 1.48505 * 109.47307 * 270.00278 * 3 2 1 5 5 H 1.48499 * 109.47396 * 30.00420 * 3 2 1 6 6 H 1.48502 * 109.47351 * 150.00550 * 3 2 1 7 7 C 1.38958 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99619 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00208 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99585 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00242 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.46953 * 179.97438 * 12 10 9 14 14 C 1.34779 * 119.99765 * 179.97438 * 13 12 10 15 15 O 1.21592 * 120.00015 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00111 * 179.97438 * 14 13 12 17 17 C 1.46505 * 120.00303 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47221 * 180.02562 * 17 16 14 19 19 H 1.09002 * 109.47566 * 59.99774 * 18 17 16 20 20 O 1.42897 * 109.47041 * 299.99787 * 18 17 16 21 21 C 1.53001 * 109.46983 * 179.97438 * 18 17 16 22 22 C 1.50702 * 109.46955 * 184.99617 * 21 18 17 23 23 C 1.38271 * 119.98277 * 89.99892 * 22 21 18 24 24 C 1.38229 * 120.05108 * 179.74201 * 23 22 21 25 25 C 1.38223 * 120.02024 * 0.25898 * 24 23 22 26 26 C 1.38433 * 119.97726 * 359.97438 * 25 24 23 27 27 F 1.35105 * 120.02401 * 179.97438 * 26 25 24 28 28 C 1.38170 * 119.99204 * 270.25782 * 22 21 18 29 29 H 0.97000 * 120.00262 * 359.97438 * 1 2 3 30 30 H 0.97007 * 120.00057 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47151 * 60.00035 * 12 10 9 32 32 H 1.09004 * 109.47229 * 300.00104 * 12 10 9 33 33 H 0.96990 * 120.00327 * 359.97438 * 13 12 10 34 34 H 0.97003 * 119.99965 * 0.02562 * 16 14 13 35 35 H 1.08994 * 109.47329 * 59.99804 * 17 16 14 36 36 H 1.08997 * 109.46526 * 299.99747 * 17 16 14 37 37 H 0.96702 * 114.00217 * 299.99839 * 20 18 17 38 38 H 1.08998 * 109.46595 * 65.00081 * 21 18 17 39 39 H 1.08995 * 109.47038 * 304.99581 * 21 18 17 40 40 H 1.08002 * 119.97858 * 0.02817 * 23 22 21 41 41 H 1.07994 * 119.98968 * 180.27807 * 24 23 22 42 42 H 1.08004 * 120.00504 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.01123 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8630 0.0000 13 7 2.1957 -5.9765 -0.0007 14 6 1.7464 -7.2472 0.0002 15 8 0.5509 -7.4694 0.0011 16 7 2.6221 -8.2716 -0.0010 17 6 2.1338 -9.6529 -0.0006 18 6 3.3237 -10.6145 -0.0016 19 1 3.9301 -10.4433 0.8879 20 8 4.1167 -10.3900 -1.1690 21 6 2.8137 -12.0570 -0.0005 22 6 3.9808 -13.0024 0.1223 23 6 4.4189 -13.4007 1.3718 24 6 5.4860 -14.2720 1.4860 25 6 6.1196 -14.7418 0.3510 26 6 5.6849 -14.3400 -0.9004 27 9 6.3039 -14.7982 -2.0104 28 6 4.6161 -13.4667 -1.0135 29 1 -0.4850 0.8400 0.0004 30 1 0.3533 -2.3907 0.0002 31 1 0.6166 -4.9209 -0.8897 32 1 0.6173 -4.9205 0.8903 33 1 3.1492 -5.7993 -0.0018 34 1 3.5758 -8.0944 -0.0021 35 1 1.5271 -9.8240 -0.8899 36 1 1.5293 -9.8242 0.8901 37 1 3.6405 -10.5246 -1.9998 38 1 2.2821 -12.2550 -0.9313 39 1 2.1378 -12.2028 0.8421 40 1 3.9241 -13.0344 2.2592 41 1 5.8244 -14.5859 2.4623 42 1 6.9535 -15.4223 0.4405 43 1 4.2761 -13.1525 -1.9892 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001312661756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:15 Heat of formation + Delta-G solvation = -146.042034 kcal Electronic energy + Delta-G solvation = -27363.708797 eV Core-core repulsion = 22937.005849 eV Total energy + Delta-G solvation = -4426.702949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.25176 -40.13901 -39.65156 -38.32916 -37.76242 -34.49962 -34.23194 -33.64029 -33.33236 -31.37619 -31.04215 -29.98174 -27.77183 -26.05866 -24.35593 -23.17967 -22.62180 -21.74761 -20.64791 -19.58238 -18.44338 -18.06290 -17.82294 -17.00035 -16.87384 -16.53997 -16.22041 -15.97826 -15.78207 -15.57003 -15.30841 -14.78706 -14.56603 -14.40751 -14.28186 -14.10595 -13.79716 -13.70569 -13.54056 -13.34792 -12.85607 -12.59139 -12.37442 -12.17468 -12.01403 -11.86967 -11.62643 -11.59481 -11.38303 -11.12091 -10.61179 -10.45614 -10.31762 -10.08023 -9.63047 -9.37372 -9.20942 -9.07552 -8.61952 -8.61288 -8.09391 -6.50921 -3.92855 0.70472 0.77854 2.74045 3.12109 3.14161 3.22567 3.28048 3.37770 3.75776 3.77743 3.90270 4.09787 4.12613 4.28904 4.37411 4.47058 4.60425 4.63303 4.72652 4.77151 4.90263 4.90903 5.06348 5.17813 5.22423 5.42184 5.44975 5.58162 5.65376 5.68956 5.85552 5.91255 6.00623 6.03061 6.08695 6.43325 6.46323 6.75025 7.08133 7.20807 7.46566 7.93031 8.22784 8.45893 8.77717 9.05306 9.40144 9.88152 10.65972 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028486 B = 0.001502 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.689444 B =18631.890082 C =19022.605438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.724 5.724 14 C 0.704 3.296 15 O -0.601 6.601 16 N -0.745 5.745 17 C 0.109 3.891 18 C 0.101 3.899 19 H 0.108 0.892 20 O -0.552 6.552 21 C -0.113 4.113 22 C -0.046 4.046 23 C -0.128 4.128 24 C -0.090 4.090 25 C -0.159 4.159 26 C 0.098 3.902 27 F -0.141 7.141 28 C -0.138 4.138 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.407 0.593 34 H 0.401 0.599 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.376 0.624 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.292 -29.209 1.240 29.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.484 6.484 12 C 0.000 4.000 13 N -0.381 5.381 14 C 0.404 3.596 15 O -0.480 6.480 16 N -0.402 5.402 17 C -0.016 4.016 18 C 0.041 3.959 19 H 0.126 0.874 20 O -0.357 6.357 21 C -0.151 4.151 22 C -0.047 4.047 23 C -0.147 4.147 24 C -0.108 4.108 25 C -0.178 4.178 26 C 0.079 3.921 27 F -0.120 7.120 28 C -0.157 4.157 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.245 0.755 34 H 0.236 0.764 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.224 0.776 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.319 -29.086 1.644 29.810 hybrid contribution 0.306 0.779 -0.588 1.023 sum 6.625 -28.308 1.057 29.092 Atomic orbital electron populations 1.69614 1.06002 1.28504 1.49353 1.25323 0.95666 0.99917 0.96811 0.85808 0.79212 0.80496 0.78476 1.20280 1.20812 1.19345 1.19732 0.93467 0.82017 1.48255 0.87685 1.41785 1.09483 1.04442 1.62696 1.19769 0.88303 0.85022 0.85511 1.90494 1.13754 1.86858 1.57308 1.20782 0.91208 0.84871 1.03109 1.44766 1.11294 1.03311 1.78713 1.15849 0.85135 0.80622 0.78003 1.90904 1.14093 1.84344 1.58653 1.44871 1.09427 1.04596 1.81270 1.21829 0.96086 0.80491 1.03178 1.22177 0.92115 0.91373 0.90192 0.87396 1.86645 1.40992 1.92350 1.15732 1.21299 0.95605 0.93409 1.04786 1.19504 0.96403 0.96312 0.92442 1.21154 0.97669 0.98614 0.97223 1.21003 0.95173 0.96382 0.98198 1.21168 1.02309 1.03092 0.91250 1.17719 0.94163 0.97519 0.82679 1.91510 1.81678 1.87418 1.51348 1.20991 0.96259 0.98416 0.99995 0.91605 0.77020 0.90042 0.90027 0.75526 0.76390 0.91300 0.90691 0.77601 0.89716 0.88902 0.85230 0.84972 0.84896 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.85 13.05 55.50 0.72 -23.12 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.31 -8.30 9.68 -14.93 -0.14 -8.45 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.62 5.29 -10.96 -0.06 -13.68 16 10 C 0.43 9.84 7.85 -10.99 -0.09 9.75 16 11 O -0.60 -15.31 15.24 5.55 0.08 -15.23 16 12 C 0.13 2.40 6.15 -5.20 -0.03 2.36 16 13 N -0.72 -12.13 5.53 -66.41 -0.37 -12.50 16 14 C 0.70 11.18 8.57 -86.92 -0.74 10.44 16 15 O -0.60 -11.47 16.34 5.29 0.09 -11.38 16 16 N -0.74 -8.44 5.45 -65.23 -0.36 -8.79 16 17 C 0.11 0.93 5.34 -4.04 -0.02 0.91 16 18 C 0.10 0.62 3.04 -26.73 -0.08 0.54 16 19 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 20 O -0.55 -3.98 12.57 -35.23 -0.44 -4.42 16 21 C -0.11 -0.52 5.03 -27.88 -0.14 -0.66 16 22 C -0.05 -0.29 4.97 -104.63 -0.52 -0.81 16 23 C -0.13 -0.74 9.70 -39.57 -0.38 -1.12 16 24 C -0.09 -0.51 10.04 -39.59 -0.40 -0.91 16 25 C -0.16 -1.09 10.03 -39.51 -0.40 -1.49 16 26 C 0.10 0.81 7.30 -39.42 -0.29 0.52 16 27 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 28 C -0.14 -1.00 9.37 -39.52 -0.37 -1.37 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.41 6.70 7.45 -40.82 -0.30 6.40 16 34 H 0.40 4.02 8.36 -40.82 -0.34 3.68 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.38 1.70 9.05 45.56 0.41 2.12 16 38 H 0.08 0.32 8.09 -51.93 -0.42 -0.10 16 39 H 0.09 0.33 8.08 -51.93 -0.42 -0.09 16 40 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 42 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 LS Contribution 381.52 15.07 5.75 5.75 Total: -1.00 -33.89 381.52 -7.98 -41.86 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.01 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: -3.70 Total: 10.29 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.06 Total: -58.10 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.27 Total: -31.03 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.89 -7.98 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312661756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.180 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds