Wall clock time and date at job start Tue Mar 31 2020 22:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86791 * 120.00140 * 2 1 4 4 H 1.48505 * 109.47307 * 270.00278 * 3 2 1 5 5 H 1.48499 * 109.47396 * 30.00420 * 3 2 1 6 6 H 1.48502 * 109.47351 * 150.00550 * 3 2 1 7 7 C 1.38958 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99619 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00208 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99585 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00242 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.46953 * 179.97438 * 12 10 9 14 14 C 1.34779 * 119.99765 * 179.97438 * 13 12 10 15 15 O 1.21592 * 120.00015 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00111 * 179.97438 * 14 13 12 17 17 C 1.46505 * 120.00303 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47221 * 180.02562 * 17 16 14 19 19 H 1.09002 * 109.47566 * 59.99774 * 18 17 16 20 20 O 1.42897 * 109.47041 * 299.99787 * 18 17 16 21 21 C 1.53001 * 109.46983 * 179.97438 * 18 17 16 22 22 C 1.50702 * 109.46955 * 184.99617 * 21 18 17 23 23 C 1.38271 * 119.98277 * 89.99892 * 22 21 18 24 24 C 1.38229 * 120.05108 * 179.74201 * 23 22 21 25 25 C 1.38223 * 120.02024 * 0.25898 * 24 23 22 26 26 C 1.38433 * 119.97726 * 359.97438 * 25 24 23 27 27 F 1.35105 * 120.02401 * 179.97438 * 26 25 24 28 28 C 1.38170 * 119.99204 * 270.25782 * 22 21 18 29 29 H 0.97000 * 120.00262 * 359.97438 * 1 2 3 30 30 H 0.97007 * 120.00057 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47151 * 60.00035 * 12 10 9 32 32 H 1.09004 * 109.47229 * 300.00104 * 12 10 9 33 33 H 0.96990 * 120.00327 * 359.97438 * 13 12 10 34 34 H 0.97003 * 119.99965 * 0.02562 * 16 14 13 35 35 H 1.08994 * 109.47329 * 59.99804 * 17 16 14 36 36 H 1.08997 * 109.46526 * 299.99747 * 17 16 14 37 37 H 0.96702 * 114.00217 * 299.99839 * 20 18 17 38 38 H 1.08998 * 109.46595 * 65.00081 * 21 18 17 39 39 H 1.08995 * 109.47038 * 304.99581 * 21 18 17 40 40 H 1.08002 * 119.97858 * 0.02817 * 23 22 21 41 41 H 1.07994 * 119.98968 * 180.27807 * 24 23 22 42 42 H 1.08004 * 120.00504 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.01123 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8630 0.0000 13 7 2.1957 -5.9765 -0.0007 14 6 1.7464 -7.2472 0.0002 15 8 0.5509 -7.4694 0.0011 16 7 2.6221 -8.2716 -0.0010 17 6 2.1338 -9.6529 -0.0006 18 6 3.3237 -10.6145 -0.0016 19 1 3.9301 -10.4433 0.8879 20 8 4.1167 -10.3900 -1.1690 21 6 2.8137 -12.0570 -0.0005 22 6 3.9808 -13.0024 0.1223 23 6 4.4189 -13.4007 1.3718 24 6 5.4860 -14.2720 1.4860 25 6 6.1196 -14.7418 0.3510 26 6 5.6849 -14.3400 -0.9004 27 9 6.3039 -14.7982 -2.0104 28 6 4.6161 -13.4667 -1.0135 29 1 -0.4850 0.8400 0.0004 30 1 0.3533 -2.3907 0.0002 31 1 0.6166 -4.9209 -0.8897 32 1 0.6173 -4.9205 0.8903 33 1 3.1492 -5.7993 -0.0018 34 1 3.5758 -8.0944 -0.0021 35 1 1.5271 -9.8240 -0.8899 36 1 1.5293 -9.8242 0.8901 37 1 3.6405 -10.5246 -1.9998 38 1 2.2821 -12.2550 -0.9313 39 1 2.1378 -12.2028 0.8421 40 1 3.9241 -13.0344 2.2592 41 1 5.8244 -14.5859 2.4623 42 1 6.9535 -15.4223 0.4405 43 1 4.2761 -13.1525 -1.9892 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001312661756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:15 Heat of formation + Delta-G solvation = -172.689364 kcal Electronic energy + Delta-G solvation = -27364.864312 eV Core-core repulsion = 22937.005849 eV Total energy + Delta-G solvation = -4427.858463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.87999 -41.23259 -40.36762 -39.96523 -38.48184 -36.23765 -35.26046 -35.23830 -33.81294 -33.35735 -31.52852 -30.70769 -29.10611 -27.05875 -26.01007 -23.65095 -23.25174 -22.31838 -21.77765 -21.34873 -20.10089 -19.55459 -18.50543 -17.64808 -17.53016 -17.39647 -17.05912 -17.02838 -16.78531 -16.55949 -16.48089 -16.41490 -15.86136 -15.58104 -15.41127 -15.09069 -14.85316 -14.69498 -14.31145 -13.98159 -13.92155 -13.86061 -13.53348 -13.31506 -13.08998 -12.89472 -12.78678 -12.44641 -12.40705 -12.12079 -12.08528 -11.85386 -11.56073 -11.46777 -11.11330 -10.54420 -10.41346 -10.09047 -9.84862 -9.78840 -9.57588 -8.50040 -6.00145 0.21325 0.30827 1.37304 1.43396 1.55028 1.64168 1.91163 2.14022 2.29584 2.64704 3.05642 3.17257 3.26115 3.33025 3.52449 3.62700 3.87110 3.94734 4.09984 4.19461 4.21819 4.25180 4.33522 4.43320 4.45271 4.48134 4.58573 4.75122 4.86282 5.02240 5.09927 5.18396 5.22091 5.32844 5.39798 5.41258 5.50191 5.58589 5.92284 5.97089 5.99765 6.49439 6.80563 7.04382 7.04709 7.44104 7.55415 7.96039 8.66811 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028486 B = 0.001502 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.689444 B =18631.890082 C =19022.605438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.625 6.625 12 C 0.142 3.858 13 N -0.726 5.726 14 C 0.704 3.296 15 O -0.633 6.633 16 N -0.729 5.729 17 C 0.107 3.893 18 C 0.115 3.885 19 H 0.108 0.892 20 O -0.568 6.568 21 C -0.106 4.106 22 C -0.051 4.051 23 C -0.131 4.131 24 C -0.093 4.093 25 C -0.168 4.168 26 C 0.069 3.931 27 F -0.155 7.155 28 C -0.148 4.148 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.409 0.591 34 H 0.410 0.590 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.387 0.613 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.143 0.857 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.211 -29.709 1.981 30.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.513 6.513 12 C 0.014 3.986 13 N -0.383 5.383 14 C 0.403 3.597 15 O -0.515 6.515 16 N -0.385 5.385 17 C -0.017 4.017 18 C 0.055 3.945 19 H 0.126 0.874 20 O -0.375 6.375 21 C -0.144 4.144 22 C -0.051 4.051 23 C -0.149 4.149 24 C -0.110 4.110 25 C -0.187 4.187 26 C 0.050 3.950 27 F -0.134 7.134 28 C -0.166 4.166 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.247 0.753 34 H 0.246 0.754 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.237 0.763 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.169 0.831 41 H 0.173 0.827 42 H 0.160 0.840 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.248 -29.634 2.377 30.378 hybrid contribution 0.347 0.840 -0.804 1.213 sum 6.595 -28.794 1.573 29.581 Atomic orbital electron populations 1.69678 1.06975 1.29613 1.49263 1.26117 0.96534 1.02633 0.95787 0.84866 0.77893 0.76525 0.78676 1.19606 1.19637 1.19520 1.19741 0.92972 0.83588 1.50450 0.89607 1.41829 1.09591 1.04565 1.63469 1.20449 0.88122 0.85955 0.83477 1.90471 1.15232 1.87570 1.58005 1.20573 0.90976 0.83038 1.04035 1.44709 1.10969 1.03405 1.79248 1.15959 0.85143 0.80799 0.77788 1.90882 1.15602 1.84739 1.60253 1.44846 1.09319 1.04788 1.79532 1.22052 0.97210 0.79130 1.03319 1.22054 0.90935 0.91554 0.89935 0.87406 1.86623 1.41786 1.92470 1.16614 1.21269 0.95253 0.91736 1.06149 1.19681 0.96677 0.96468 0.92315 1.21509 0.97462 0.98069 0.97842 1.21332 0.94916 0.95974 0.98811 1.21407 1.02783 1.03330 0.91184 1.18065 0.95229 0.98878 0.82861 1.91465 1.82071 1.87767 1.52114 1.21166 0.96206 0.98430 1.00838 0.91078 0.76673 0.89083 0.88993 0.75324 0.75431 0.91234 0.90478 0.76333 0.88662 0.87310 0.83107 0.82663 0.83956 0.84315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.43 13.05 21.67 0.28 -48.14 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 3 Si 1.00 41.66 29.55 68.60 2.03 43.69 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.34 -18.61 9.68 84.04 0.81 -17.80 16 8 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 9 N -0.56 -28.00 5.29 -306.99 -1.62 -29.62 16 10 C 0.43 19.93 7.85 87.66 0.69 20.62 16 11 O -0.62 -32.24 15.24 -3.06 -0.05 -32.28 16 12 C 0.14 5.20 6.15 85.63 0.53 5.73 16 13 N -0.73 -23.67 5.53 -482.29 -2.67 -26.34 16 14 C 0.70 21.43 8.57 179.06 1.53 22.97 16 15 O -0.63 -23.41 16.34 -4.00 -0.07 -23.47 16 16 N -0.73 -15.30 5.45 -478.54 -2.61 -17.91 16 17 C 0.11 1.60 5.34 86.38 0.46 2.06 16 18 C 0.11 1.15 3.04 30.59 0.09 1.25 16 19 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 20 O -0.57 -7.22 12.57 -148.98 -1.87 -9.09 16 21 C -0.11 -0.73 5.03 29.85 0.15 -0.58 16 22 C -0.05 -0.54 4.97 -19.87 -0.10 -0.64 16 23 C -0.13 -1.21 9.70 22.28 0.22 -0.99 16 24 C -0.09 -0.89 10.04 22.26 0.22 -0.67 16 25 C -0.17 -2.19 10.03 22.31 0.22 -1.97 16 26 C 0.07 1.13 7.30 22.37 0.16 1.29 16 27 F -0.16 -3.04 17.27 44.97 0.78 -2.27 16 28 C -0.15 -2.03 9.37 22.31 0.21 -1.82 16 29 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 30 H 0.40 19.18 7.90 -92.70 -0.73 18.45 16 31 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 32 H 0.09 3.20 8.14 -2.38 -0.02 3.19 16 33 H 0.41 13.16 7.45 -92.72 -0.69 12.47 16 34 H 0.41 7.49 8.36 -92.71 -0.78 6.72 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 37 H 0.39 2.89 9.05 -74.06 -0.67 2.22 16 38 H 0.09 0.48 8.09 -2.39 -0.02 0.46 16 39 H 0.11 0.44 8.08 -2.39 -0.02 0.42 16 40 H 0.15 0.70 8.06 -2.91 -0.02 0.68 16 41 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 42 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -72.33 381.52 -1.90 -74.23 By element: Atomic # 1 Polarization: 43.58 SS G_CDS: -1.77 Total: 41.81 kcal Atomic # 6 Polarization: 23.73 SS G_CDS: 5.67 Total: 29.40 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -6.62 Total: -122.01 kcal Atomic # 8 Polarization: -62.86 SS G_CDS: -1.98 Total: -64.85 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.78 Total: -2.27 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -72.33 -1.90 -74.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312661756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.459 kcal (2) G-P(sol) polarization free energy of solvation -72.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds