Wall clock time and date at job start Tue Mar 31 2020 22:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00366 * 2 1 4 4 H 1.48495 * 109.47476 * 269.99906 * 3 2 1 5 5 H 1.48505 * 109.47029 * 30.00070 * 3 2 1 6 6 H 1.48505 * 109.47089 * 149.99727 * 3 2 1 7 7 C 1.38817 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00298 * 159.24263 * 7 2 1 9 9 N 1.36938 * 119.99727 * 339.24133 * 7 2 1 10 10 C 1.46500 * 120.00253 * 321.85676 * 9 7 2 11 11 C 1.53002 * 109.47250 * 269.99823 * 10 9 7 12 12 O 1.42899 * 109.46771 * 64.99611 * 11 10 9 13 13 C 1.46500 * 119.99938 * 141.85557 * 9 7 2 14 14 H 1.08997 * 109.52840 * 184.53753 * 13 9 7 15 15 C 1.53045 * 109.49868 * 64.45248 * 13 9 7 16 16 C 1.53040 * 109.52832 * 178.67590 * 15 13 9 17 17 C 1.53199 * 109.31027 * 61.37537 * 16 15 13 18 18 N 1.46919 * 108.77661 * 305.36609 * 17 16 15 19 19 C 1.34773 * 120.63146 * 233.58912 * 18 17 16 20 20 O 1.21286 * 120.00506 * 179.97438 * 19 18 17 21 21 C 1.50702 * 119.99826 * 359.97438 * 19 18 17 22 22 C 1.50706 * 109.47172 * 180.02562 * 21 19 18 23 23 C 1.33638 * 122.75005 * 124.73442 * 22 21 19 24 24 S 1.76202 * 107.92366 * 179.97438 * 23 22 21 25 25 C 1.70982 * 90.27910 * 0.27205 * 24 23 22 26 26 N 1.29018 * 110.16933 * 359.84103 * 25 24 23 27 27 C 1.46932 * 118.74064 * 53.60364 * 18 17 16 28 28 H 0.96998 * 119.99887 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47051 * 30.00048 * 10 9 7 30 30 H 1.09001 * 109.46940 * 149.99751 * 10 9 7 31 31 H 1.08995 * 109.47281 * 184.99883 * 11 10 9 32 32 H 1.09000 * 109.46970 * 305.00313 * 11 10 9 33 33 H 0.96704 * 113.99913 * 179.97438 * 12 11 10 34 34 H 1.09002 * 109.45668 * 58.66568 * 15 13 9 35 35 H 1.08992 * 109.46233 * 298.69447 * 15 13 9 36 36 H 1.08992 * 109.49685 * 181.32466 * 16 15 13 37 37 H 1.09000 * 109.49676 * 301.39221 * 16 15 13 38 38 H 1.09004 * 109.58458 * 65.15134 * 17 16 15 39 39 H 1.09000 * 109.58354 * 185.57588 * 17 16 15 40 40 H 1.09004 * 109.47214 * 300.00293 * 21 19 18 41 41 H 1.08998 * 109.47411 * 60.00334 * 21 19 18 42 42 H 1.07996 * 126.03672 * 0.03203 * 23 22 21 43 43 H 1.07998 * 124.91234 * 179.84086 * 25 24 23 44 44 H 1.09001 * 109.58034 * 66.18377 * 27 18 17 45 45 H 1.09000 * 109.58416 * 186.60349 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0376 -1.2325 -0.3320 9 7 1.3921 -2.3498 0.4193 10 6 0.4660 -2.3101 1.5537 11 6 1.2382 -2.5556 2.8515 12 8 2.1529 -1.4801 3.0722 13 6 1.6570 -3.6172 -0.2660 14 1 1.0206 -4.3973 0.1518 15 6 3.1264 -4.0019 -0.0786 16 6 3.3960 -5.3423 -0.7663 17 6 3.1194 -5.2064 -2.2670 18 7 1.7538 -4.6972 -2.4520 19 6 0.8781 -5.3510 -3.2407 20 8 -0.2466 -4.9207 -3.3850 21 6 1.2965 -6.6167 -3.9435 22 6 0.1424 -7.1452 -4.7559 23 6 0.2342 -7.3934 -6.0658 24 16 -1.3289 -7.9936 -6.6148 25 6 -1.9526 -7.8435 -5.0299 26 7 -1.0417 -7.3945 -4.2341 27 6 1.3609 -3.4615 -1.7610 28 1 -0.4850 0.8400 -0.0004 29 1 -0.0147 -1.3327 1.5963 30 1 -0.2927 -3.0830 1.4305 31 1 0.5385 -2.6145 3.6851 32 1 1.7906 -3.4921 2.7739 33 1 2.6774 -1.5693 3.8797 34 1 3.3460 -4.0891 0.9855 35 1 3.7619 -3.2336 -0.5188 36 1 4.4367 -5.6272 -0.6125 37 1 2.7434 -6.1060 -0.3433 38 1 3.8321 -4.5096 -2.7082 39 1 3.2140 -6.1811 -2.7456 40 1 2.1380 -6.4049 -4.6032 41 1 1.5925 -7.3616 -3.2048 42 1 1.1116 -7.2520 -6.6794 43 1 -2.9628 -8.0889 -4.7374 44 1 1.9301 -2.6224 -2.1610 45 1 0.2951 -3.2849 -1.9059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316747218.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:41 Heat of formation + Delta-G solvation = -6.091738 kcal Electronic energy + Delta-G solvation = -28050.796507 eV Core-core repulsion = 24196.375435 eV Total energy + Delta-G solvation = -3854.421072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.33572 -39.22667 -37.29617 -36.08310 -34.53519 -32.51614 -31.89361 -31.13948 -29.75553 -28.34334 -27.08951 -25.23607 -24.49790 -23.91242 -22.29298 -20.79358 -20.06018 -19.54763 -18.80239 -17.81847 -16.94639 -16.52045 -16.34457 -15.90812 -15.29741 -15.02942 -14.64906 -14.45300 -14.22823 -13.81466 -13.65835 -13.51888 -13.43304 -13.33027 -12.88232 -12.76600 -12.51361 -12.44140 -11.99643 -11.87248 -11.49537 -11.20885 -11.15374 -10.82668 -10.67312 -10.60079 -10.40541 -10.05349 -9.97078 -9.81357 -9.66914 -9.58435 -9.55539 -9.37074 -9.03433 -8.88875 -8.34148 -8.10450 -6.45732 -5.65236 -3.22582 0.63608 1.30475 1.61782 2.72110 3.01856 3.46251 3.46628 3.53606 3.59390 4.10665 4.60138 4.75921 4.80686 5.03170 5.07137 5.13135 5.24430 5.28079 5.30902 5.39800 5.48996 5.56798 5.57515 5.75846 5.87939 5.98318 6.00699 6.10835 6.17618 6.23220 6.37000 6.38450 6.60457 6.68100 6.73897 6.82848 6.93738 7.13817 7.19478 7.70830 7.73166 7.87462 7.94500 8.51469 8.61645 8.69297 9.29140 9.93540 10.49167 11.36174 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.002849 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.705403 B = 9824.503228 C =10249.506220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.020 3.980 3 Si 0.897 3.103 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.240 4.240 8 H 0.055 0.945 9 N -0.568 5.568 10 C 0.143 3.857 11 C 0.062 3.938 12 O -0.541 6.541 13 C 0.166 3.834 14 H 0.047 0.953 15 C -0.127 4.127 16 C -0.132 4.132 17 C 0.108 3.892 18 N -0.610 5.610 19 C 0.513 3.487 20 O -0.524 6.524 21 C -0.067 4.067 22 C 0.089 3.911 23 C -0.255 4.255 24 S 0.099 5.901 25 C 0.028 3.972 26 N -0.441 5.441 27 C 0.112 3.888 28 H 0.252 0.748 29 H 0.102 0.898 30 H 0.037 0.963 31 H 0.018 0.982 32 H 0.021 0.979 33 H 0.348 0.652 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.177 0.823 43 H 0.198 0.802 44 H 0.075 0.925 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.880 -18.137 -7.768 20.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.180 4.180 3 Si 0.728 3.272 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.073 0.927 9 N -0.287 5.287 10 C 0.016 3.984 11 C -0.018 4.018 12 O -0.342 6.342 13 C 0.058 3.942 14 H 0.065 0.935 15 C -0.166 4.166 16 C -0.171 4.171 17 C -0.015 4.015 18 N -0.344 5.344 19 C 0.299 3.701 20 O -0.400 6.400 21 C -0.110 4.110 22 C -0.044 4.044 23 C -0.394 4.394 24 S 0.351 5.649 25 C -0.271 4.271 26 N -0.153 5.153 27 C -0.011 4.011 28 H 0.062 0.938 29 H 0.120 0.880 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.040 0.960 33 H 0.190 0.810 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.194 0.806 43 H 0.215 0.785 44 H 0.093 0.907 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.267 -17.781 -8.803 19.970 hybrid contribution 1.413 0.972 1.176 2.079 sum 3.680 -16.808 -7.628 18.821 Atomic orbital electron populations 1.69972 1.05596 1.25524 1.52152 1.25071 0.94843 0.98504 0.99593 0.86405 0.79708 0.83982 0.77150 1.21826 1.21809 1.20397 1.18689 0.93262 0.85130 1.39903 0.92696 1.43655 1.51409 1.03139 1.30474 1.21034 0.90517 1.03326 0.83494 1.23052 0.91261 0.88460 0.99061 1.86879 1.55693 1.46478 1.45192 1.20660 0.93194 0.89547 0.90844 0.93474 1.22010 1.00012 0.94892 0.99724 1.21930 1.00930 0.99358 0.94901 1.21708 0.83750 0.98894 0.97165 1.48317 1.12056 1.26942 1.47129 1.20144 0.85291 0.84933 0.79738 1.90737 1.19609 1.67294 1.62350 1.20305 0.94923 0.96693 0.99093 1.19721 0.93079 1.00529 0.91021 1.26763 1.02352 1.11666 0.98589 1.83915 1.04902 1.60750 1.15330 1.28416 1.03757 1.02848 0.92096 1.66031 1.00186 1.11720 1.37365 1.22240 1.02345 0.83504 0.93010 0.93770 0.88047 0.94449 0.96362 0.96045 0.80983 0.92560 0.91685 0.91526 0.92133 0.91424 0.90724 0.87601 0.87419 0.80575 0.78510 0.90722 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 11.47 55.49 0.64 -25.46 16 2 C 0.02 0.55 4.97 -17.43 -0.09 0.47 16 3 Si 0.90 22.45 29.60 -169.99 -5.03 17.42 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.42 7.49 -15.06 -0.11 -6.54 16 8 H 0.06 1.48 7.07 -52.49 -0.37 1.11 16 9 N -0.57 -13.74 2.34 -165.52 -0.39 -14.13 16 10 C 0.14 3.38 5.70 -4.04 -0.02 3.36 16 11 C 0.06 1.24 7.39 37.16 0.27 1.51 16 12 O -0.54 -11.48 13.13 -35.23 -0.46 -11.94 16 13 C 0.17 3.42 2.79 -67.81 -0.19 3.23 16 14 H 0.05 0.98 7.77 -51.93 -0.40 0.58 16 15 C -0.13 -2.18 5.18 -26.69 -0.14 -2.32 16 16 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 17 C 0.11 1.33 6.34 -3.71 -0.02 1.30 16 18 N -0.61 -10.13 2.97 -172.76 -0.51 -10.64 16 19 C 0.51 8.78 7.66 -10.99 -0.08 8.70 16 20 O -0.52 -11.54 14.86 5.55 0.08 -11.46 16 21 C -0.07 -0.81 4.54 -29.03 -0.13 -0.94 16 22 C 0.09 1.18 5.64 -84.22 -0.47 0.70 16 23 C -0.25 -2.66 11.07 29.12 0.32 -2.34 16 24 S 0.10 0.92 23.22 -107.50 -2.50 -1.58 16 25 C 0.03 0.32 12.23 51.58 0.63 0.95 16 26 N -0.44 -6.58 9.68 -11.90 -0.12 -6.70 16 27 C 0.11 2.34 5.70 -3.71 -0.02 2.32 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.10 2.78 5.53 -51.93 -0.29 2.50 16 30 H 0.04 0.84 7.89 -51.93 -0.41 0.43 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.35 5.39 9.12 45.56 0.42 5.80 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.21 7.22 -51.93 -0.38 0.84 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.66 5.93 -51.93 -0.31 0.35 16 40 H 0.11 0.92 7.83 -51.93 -0.41 0.51 16 41 H 0.11 1.09 7.69 -51.93 -0.40 0.69 16 42 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.20 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.07 1.70 7.40 -51.93 -0.38 1.31 16 45 H 0.09 2.17 7.00 -51.93 -0.36 1.81 16 LS Contribution 375.11 15.07 5.65 5.65 Total: -1.00 -35.60 375.11 -8.67 -44.27 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.81 Total: 6.02 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -0.22 Total: 8.55 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.38 Total: -56.92 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.38 Total: -23.40 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.42 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.50 Total: -1.58 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.60 -8.67 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316747218.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.174 kcal (2) G-P(sol) polarization free energy of solvation -35.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds