Wall clock time and date at job start Tue Mar 31 2020 22:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00018 * 2 1 4 4 H 1.48500 * 109.47184 * 239.99932 * 3 2 1 5 5 H 1.48507 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47589 * 119.99632 * 3 2 1 7 7 C 1.38813 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00168 * 157.23786 * 7 2 1 9 9 N 1.36936 * 119.99384 * 337.23782 * 7 2 1 10 10 C 1.46500 * 120.00555 * 326.29299 * 9 7 2 11 11 C 1.52999 * 109.47086 * 264.41196 * 10 9 7 12 12 O 1.42911 * 109.46806 * 64.99764 * 11 10 9 13 13 C 1.46506 * 119.99379 * 146.29167 * 9 7 2 14 14 H 1.09005 * 109.49319 * 179.97438 * 13 9 7 15 15 C 1.53036 * 109.50029 * 299.99797 * 13 9 7 16 16 C 1.53043 * 109.53835 * 181.31668 * 15 13 9 17 17 C 1.53190 * 109.31464 * 298.63519 * 16 15 13 18 18 N 1.46932 * 108.77376 * 54.63388 * 17 16 15 19 19 C 1.34771 * 120.62958 * 126.36437 * 18 17 16 20 20 O 1.21280 * 120.00192 * 180.02562 * 19 18 17 21 21 C 1.50702 * 120.00162 * 0.02562 * 19 18 17 22 22 C 1.50694 * 109.47338 * 179.97438 * 21 19 18 23 23 C 1.33642 * 122.75256 * 124.98040 * 22 21 19 24 24 S 1.76194 * 107.92480 * 180.02562 * 23 22 21 25 25 C 1.70977 * 90.28654 * 0.02562 * 24 23 22 26 26 N 1.29032 * 110.16357 * 359.97438 * 25 24 23 27 27 C 1.46924 * 118.74087 * 306.64677 * 18 17 16 28 28 H 0.97006 * 120.00212 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46692 * 24.41482 * 10 9 7 30 30 H 1.08997 * 109.46892 * 144.41289 * 10 9 7 31 31 H 1.08994 * 109.46960 * 184.99476 * 11 10 9 32 32 H 1.08997 * 109.47140 * 305.00374 * 11 10 9 33 33 H 0.96701 * 113.99607 * 179.97438 * 12 11 10 34 34 H 1.09001 * 109.45917 * 61.29700 * 15 13 9 35 35 H 1.09001 * 109.45248 * 301.33431 * 15 13 9 36 36 H 1.09004 * 109.49457 * 178.68371 * 16 15 13 37 37 H 1.08996 * 109.49318 * 58.58824 * 16 15 13 38 38 H 1.08997 * 109.58575 * 294.85117 * 17 16 15 39 39 H 1.08992 * 109.70502 * 174.49078 * 17 16 15 40 40 H 1.09002 * 109.47068 * 59.99322 * 21 19 18 41 41 H 1.09007 * 109.46833 * 299.99216 * 21 19 18 42 42 H 1.07993 * 126.03404 * 0.02562 * 23 22 21 43 43 H 1.08001 * 124.92106 * 179.97438 * 25 24 23 44 44 H 1.08991 * 109.58990 * 173.14463 * 27 18 17 45 45 H 1.09004 * 109.58297 * 293.57025 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0271 -1.2387 -0.3613 9 7 1.4056 -2.3416 0.4599 10 6 0.4395 -2.2664 1.5587 11 6 1.1483 -2.5617 2.8820 12 8 2.1056 -1.5348 3.1492 13 6 1.7247 -3.6360 -0.1476 14 1 1.1511 -4.4207 0.3458 15 6 1.3691 -3.6035 -1.6357 16 6 1.6715 -4.9658 -2.2641 17 6 3.1682 -5.2641 -2.1310 18 7 3.5482 -5.1546 -0.7159 19 6 4.1835 -6.1682 -0.0951 20 8 4.4915 -6.0658 1.0734 21 6 4.5111 -7.4289 -0.8529 22 6 5.2159 -8.3965 0.0625 23 6 4.7842 -9.6449 0.2654 24 16 5.8892 -10.4238 1.3955 25 6 6.8213 -8.9931 1.4834 26 7 6.3078 -8.0806 0.7293 27 6 3.2170 -3.9216 0.0111 28 1 -0.4851 0.8401 -0.0004 29 1 0.0063 -1.2668 1.5937 30 1 -0.3509 -2.9995 1.3984 31 1 0.4150 -2.5933 3.6878 32 1 1.6566 -3.5236 2.8152 33 1 2.5937 -1.6573 3.9749 34 1 1.9601 -2.8347 -2.1335 35 1 0.3090 -3.3777 -1.7508 36 1 1.3962 -4.9491 -3.3187 37 1 1.0994 -5.7383 -1.7504 38 1 3.7379 -4.5447 -2.7191 39 1 3.3749 -6.2730 -2.4878 40 1 5.1596 -7.1883 -1.6954 41 1 3.5902 -7.8814 -1.2208 42 1 3.9122 -10.0966 -0.1839 43 1 7.7110 -8.8708 2.0832 44 1 3.4535 -4.0457 1.0678 45 1 3.7908 -3.0904 -0.3988 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316747224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:45 Heat of formation + Delta-G solvation = -5.592468 kcal Electronic energy + Delta-G solvation = -28136.239874 eV Core-core repulsion = 24281.840451 eV Total energy + Delta-G solvation = -3854.399422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.41490 -39.30797 -37.34322 -36.09539 -34.56849 -32.56942 -31.89973 -31.24148 -29.74125 -28.40798 -27.13094 -25.29831 -24.50787 -24.02074 -22.15717 -20.98819 -20.02602 -19.55377 -18.90641 -17.83131 -17.03654 -16.49811 -16.43789 -15.90313 -15.42105 -15.06378 -14.68751 -14.40438 -14.30423 -13.93352 -13.74719 -13.49112 -13.41951 -13.35520 -12.83212 -12.78871 -12.70481 -12.35060 -12.15873 -11.89443 -11.56344 -11.25296 -10.96332 -10.90983 -10.73741 -10.59823 -10.35745 -10.17532 -9.87242 -9.82152 -9.73670 -9.64962 -9.49809 -9.45708 -9.02883 -8.95486 -8.42070 -8.16606 -6.53250 -5.69370 -3.19504 0.57418 1.24282 1.55797 2.64925 2.92440 3.36499 3.47418 3.52527 3.60502 4.03662 4.59651 4.68859 4.75813 4.96702 5.05794 5.07764 5.24223 5.27185 5.30889 5.40958 5.43017 5.51001 5.58390 5.75483 5.87604 5.94718 6.02231 6.07016 6.17781 6.25040 6.34430 6.40469 6.56573 6.65987 6.71204 6.84781 6.89355 7.09661 7.22116 7.63890 7.73727 7.76773 7.90551 8.48709 8.52002 8.67215 9.26560 9.92212 10.44872 11.33657 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.002895 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.925293 B = 9670.681454 C =10218.120201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.015 3.985 3 Si 0.896 3.104 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.058 0.942 9 N -0.568 5.568 10 C 0.143 3.857 11 C 0.058 3.942 12 O -0.544 6.544 13 C 0.167 3.833 14 H 0.047 0.953 15 C -0.122 4.122 16 C -0.133 4.133 17 C 0.108 3.892 18 N -0.608 5.608 19 C 0.515 3.485 20 O -0.529 6.529 21 C -0.067 4.067 22 C 0.088 3.912 23 C -0.254 4.254 24 S 0.101 5.899 25 C 0.027 3.973 26 N -0.442 5.442 27 C 0.105 3.895 28 H 0.252 0.748 29 H 0.109 0.891 30 H 0.035 0.965 31 H 0.019 0.981 32 H 0.022 0.978 33 H 0.350 0.650 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.177 0.823 43 H 0.198 0.802 44 H 0.082 0.918 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.099 -20.506 -2.068 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.184 4.184 3 Si 0.727 3.273 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.366 4.366 8 H 0.075 0.925 9 N -0.288 5.288 10 C 0.016 3.984 11 C -0.022 4.022 12 O -0.345 6.345 13 C 0.058 3.942 14 H 0.065 0.935 15 C -0.161 4.161 16 C -0.172 4.172 17 C -0.016 4.016 18 N -0.342 5.342 19 C 0.301 3.699 20 O -0.405 6.405 21 C -0.110 4.110 22 C -0.044 4.044 23 C -0.393 4.393 24 S 0.353 5.647 25 C -0.272 4.272 26 N -0.154 5.154 27 C -0.018 4.018 28 H 0.062 0.938 29 H 0.126 0.874 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.040 0.960 33 H 0.193 0.807 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.195 0.805 43 H 0.215 0.785 44 H 0.100 0.900 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.255 -20.509 -1.570 21.811 hybrid contribution 0.183 1.198 0.074 1.214 sum 7.437 -19.311 -1.496 20.748 Atomic orbital electron populations 1.69967 1.05536 1.25566 1.52700 1.24919 0.94861 0.98388 1.00212 0.86478 0.79228 0.83524 0.78107 1.21191 1.22002 1.20805 1.18755 0.94254 0.85709 1.37906 0.92463 1.43676 1.49094 1.01311 1.34678 1.21072 0.89983 1.03993 0.83333 1.23089 0.90482 0.89470 0.99180 1.86834 1.55283 1.49029 1.43351 1.20527 0.92212 0.89155 0.92299 0.93488 1.21927 1.02161 0.94490 0.97532 1.21970 0.94783 0.99570 1.00914 1.21750 0.96525 1.01417 0.81873 1.48226 1.57432 1.17004 1.11510 1.20146 0.78126 0.84137 0.87457 1.90710 1.52394 1.80985 1.16409 1.20299 1.00821 0.92678 0.97218 1.19710 0.93115 0.92632 0.98958 1.26775 1.06864 0.98660 1.07005 1.83931 1.20589 1.19082 1.41059 1.28414 1.04539 0.91730 1.02551 1.66039 1.10289 1.31787 1.07295 1.22195 0.98622 0.83659 0.97325 0.93782 0.87353 0.94719 0.96279 0.95971 0.80716 0.91264 0.91868 0.91369 0.92287 0.91307 0.90685 0.87367 0.87440 0.80530 0.78520 0.89951 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 11.36 55.49 0.63 -24.96 16 2 C 0.02 0.42 4.90 -17.43 -0.09 0.33 16 3 Si 0.90 22.40 29.61 -169.99 -5.03 17.37 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.34 8.06 -15.06 -0.12 -6.47 16 8 H 0.06 1.56 6.73 -52.49 -0.35 1.21 16 9 N -0.57 -13.73 2.35 -165.78 -0.39 -14.12 16 10 C 0.14 3.38 5.57 -4.04 -0.02 3.36 16 11 C 0.06 1.22 7.39 37.16 0.27 1.49 16 12 O -0.54 -12.08 13.40 -35.23 -0.47 -12.56 16 13 C 0.17 3.39 2.77 -68.03 -0.19 3.20 16 14 H 0.05 0.95 7.87 -51.93 -0.41 0.54 16 15 C -0.12 -2.23 5.12 -26.69 -0.14 -2.36 16 16 C -0.13 -1.76 6.08 -26.61 -0.16 -1.92 16 17 C 0.11 1.31 6.35 -3.71 -0.02 1.29 16 18 N -0.61 -9.65 2.98 -173.04 -0.52 -10.16 16 19 C 0.52 8.33 7.66 -10.99 -0.08 8.25 16 20 O -0.53 -10.87 14.86 5.56 0.08 -10.79 16 21 C -0.07 -0.77 4.54 -29.04 -0.13 -0.90 16 22 C 0.09 1.11 5.64 -84.23 -0.47 0.63 16 23 C -0.25 -2.50 11.07 29.12 0.32 -2.18 16 24 S 0.10 0.87 23.22 -107.50 -2.50 -1.62 16 25 C 0.03 0.29 12.23 51.59 0.63 0.92 16 26 N -0.44 -6.25 9.68 -11.90 -0.12 -6.37 16 27 C 0.11 2.07 5.74 -3.93 -0.02 2.05 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.11 2.95 5.35 -51.93 -0.28 2.67 16 30 H 0.03 0.77 8.04 -51.93 -0.42 0.35 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.35 5.90 9.12 45.56 0.42 6.31 16 34 H 0.07 1.39 7.70 -51.93 -0.40 0.99 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.65 5.93 -51.93 -0.31 0.34 16 40 H 0.11 1.03 7.94 -51.93 -0.41 0.62 16 41 H 0.11 0.88 7.58 -51.92 -0.39 0.49 16 42 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.20 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.08 1.83 7.01 -51.93 -0.36 1.46 16 45 H 0.07 1.49 6.77 -51.93 -0.35 1.14 16 LS Contribution 375.22 15.07 5.65 5.65 Total: -1.00 -34.94 375.22 -8.67 -43.61 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.79 Total: 6.26 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -0.23 Total: 7.68 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.39 Total: -55.61 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.39 Total: -23.35 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.50 Total: -1.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.94 -8.67 -43.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316747224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.020 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds