Wall clock time and date at job start Tue Mar 31 2020 22:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00018 * 2 1 4 4 H 1.48500 * 109.47184 * 239.99932 * 3 2 1 5 5 H 1.48507 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47589 * 119.99632 * 3 2 1 7 7 C 1.38813 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00168 * 157.23786 * 7 2 1 9 9 N 1.36936 * 119.99384 * 337.23782 * 7 2 1 10 10 C 1.46500 * 120.00555 * 326.29299 * 9 7 2 11 11 C 1.52999 * 109.47086 * 264.41196 * 10 9 7 12 12 O 1.42911 * 109.46806 * 64.99764 * 11 10 9 13 13 C 1.46506 * 119.99379 * 146.29167 * 9 7 2 14 14 H 1.09005 * 109.49319 * 179.97438 * 13 9 7 15 15 C 1.53036 * 109.50029 * 299.99797 * 13 9 7 16 16 C 1.53043 * 109.53835 * 181.31668 * 15 13 9 17 17 C 1.53190 * 109.31464 * 298.63519 * 16 15 13 18 18 N 1.46932 * 108.77376 * 54.63388 * 17 16 15 19 19 C 1.34771 * 120.62958 * 126.36437 * 18 17 16 20 20 O 1.21280 * 120.00192 * 180.02562 * 19 18 17 21 21 C 1.50702 * 120.00162 * 0.02562 * 19 18 17 22 22 C 1.50694 * 109.47338 * 179.97438 * 21 19 18 23 23 C 1.33642 * 122.75256 * 124.98040 * 22 21 19 24 24 S 1.76194 * 107.92480 * 180.02562 * 23 22 21 25 25 C 1.70977 * 90.28654 * 0.02562 * 24 23 22 26 26 N 1.29032 * 110.16357 * 359.97438 * 25 24 23 27 27 C 1.46924 * 118.74087 * 306.64677 * 18 17 16 28 28 H 0.97006 * 120.00212 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46692 * 24.41482 * 10 9 7 30 30 H 1.08997 * 109.46892 * 144.41289 * 10 9 7 31 31 H 1.08994 * 109.46960 * 184.99476 * 11 10 9 32 32 H 1.08997 * 109.47140 * 305.00374 * 11 10 9 33 33 H 0.96701 * 113.99607 * 179.97438 * 12 11 10 34 34 H 1.09001 * 109.45917 * 61.29700 * 15 13 9 35 35 H 1.09001 * 109.45248 * 301.33431 * 15 13 9 36 36 H 1.09004 * 109.49457 * 178.68371 * 16 15 13 37 37 H 1.08996 * 109.49318 * 58.58824 * 16 15 13 38 38 H 1.08997 * 109.58575 * 294.85117 * 17 16 15 39 39 H 1.08992 * 109.70502 * 174.49078 * 17 16 15 40 40 H 1.09002 * 109.47068 * 59.99322 * 21 19 18 41 41 H 1.09007 * 109.46833 * 299.99216 * 21 19 18 42 42 H 1.07993 * 126.03404 * 0.02562 * 23 22 21 43 43 H 1.08001 * 124.92106 * 179.97438 * 25 24 23 44 44 H 1.08991 * 109.58990 * 173.14463 * 27 18 17 45 45 H 1.09004 * 109.58297 * 293.57025 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0271 -1.2387 -0.3613 9 7 1.4056 -2.3416 0.4599 10 6 0.4395 -2.2664 1.5587 11 6 1.1483 -2.5617 2.8820 12 8 2.1056 -1.5348 3.1492 13 6 1.7247 -3.6360 -0.1476 14 1 1.1511 -4.4207 0.3458 15 6 1.3691 -3.6035 -1.6357 16 6 1.6715 -4.9658 -2.2641 17 6 3.1682 -5.2641 -2.1310 18 7 3.5482 -5.1546 -0.7159 19 6 4.1835 -6.1682 -0.0951 20 8 4.4915 -6.0658 1.0734 21 6 4.5111 -7.4289 -0.8529 22 6 5.2159 -8.3965 0.0625 23 6 4.7842 -9.6449 0.2654 24 16 5.8892 -10.4238 1.3955 25 6 6.8213 -8.9931 1.4834 26 7 6.3078 -8.0806 0.7293 27 6 3.2170 -3.9216 0.0111 28 1 -0.4851 0.8401 -0.0004 29 1 0.0063 -1.2668 1.5937 30 1 -0.3509 -2.9995 1.3984 31 1 0.4150 -2.5933 3.6878 32 1 1.6566 -3.5236 2.8152 33 1 2.5937 -1.6573 3.9749 34 1 1.9601 -2.8347 -2.1335 35 1 0.3090 -3.3777 -1.7508 36 1 1.3962 -4.9491 -3.3187 37 1 1.0994 -5.7383 -1.7504 38 1 3.7379 -4.5447 -2.7191 39 1 3.3749 -6.2730 -2.4878 40 1 5.1596 -7.1883 -1.6954 41 1 3.5902 -7.8814 -1.2208 42 1 3.9122 -10.0966 -0.1839 43 1 7.7110 -8.8708 2.0832 44 1 3.4535 -4.0457 1.0678 45 1 3.7908 -3.0904 -0.3988 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316747224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:44 Heat of formation + Delta-G solvation = -31.686575 kcal Electronic energy + Delta-G solvation = -28137.371399 eV Core-core repulsion = 24281.840451 eV Total energy + Delta-G solvation = -3855.530948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.46442 -40.38187 -38.88446 -37.69431 -36.27494 -33.96155 -33.05717 -32.87795 -31.27161 -29.55769 -28.76010 -26.34700 -25.96319 -25.48848 -23.61044 -22.46785 -21.59032 -20.63699 -20.00070 -18.73532 -18.40019 -18.27710 -18.01828 -16.92417 -16.86071 -16.40306 -16.16531 -16.01980 -15.58305 -15.43599 -15.15784 -14.76776 -14.53825 -14.38712 -14.23893 -14.11041 -13.92248 -13.78984 -13.58092 -13.14683 -13.03980 -12.84273 -12.70875 -12.50262 -12.35593 -12.25583 -11.94574 -11.71851 -11.59442 -11.58044 -11.25027 -10.83994 -10.71502 -10.49997 -10.41646 -10.31177 -9.72109 -9.59263 -8.51532 -7.77296 -5.29322 -0.15509 0.56779 0.82876 1.43960 1.49217 1.56295 1.71744 1.78126 2.20981 2.57297 3.30277 3.34108 3.54221 3.70886 3.75311 3.99897 4.09634 4.17734 4.18243 4.29068 4.34739 4.45988 4.46850 4.49392 4.50999 4.64690 4.67062 4.75466 4.81916 4.87741 4.93462 4.99651 5.02309 5.11819 5.18903 5.26525 5.48965 5.57742 5.66178 5.72335 5.81136 6.50644 6.55997 6.90432 7.10573 7.23278 7.28463 7.92962 8.41730 9.21726 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.002895 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.925293 B = 9670.681454 C =10218.120201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.031 4.031 3 Si 0.944 3.056 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.229 4.229 8 H 0.047 0.953 9 N -0.583 5.583 10 C 0.138 3.862 11 C 0.068 3.932 12 O -0.573 6.573 13 C 0.168 3.832 14 H 0.049 0.951 15 C -0.114 4.114 16 C -0.122 4.122 17 C 0.104 3.896 18 N -0.608 5.608 19 C 0.509 3.491 20 O -0.581 6.581 21 C -0.057 4.057 22 C 0.053 3.947 23 C -0.250 4.250 24 S 0.154 5.846 25 C 0.006 3.994 26 N -0.493 5.493 27 C 0.124 3.876 28 H 0.247 0.753 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.024 0.976 33 H 0.373 0.627 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.148 0.852 42 H 0.208 0.792 43 H 0.215 0.785 44 H 0.050 0.950 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.365 -23.683 -3.367 25.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.227 4.227 3 Si 0.774 3.226 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.359 4.359 8 H 0.064 0.936 9 N -0.303 5.303 10 C 0.012 3.988 11 C -0.012 4.012 12 O -0.378 6.378 13 C 0.060 3.940 14 H 0.067 0.933 15 C -0.153 4.153 16 C -0.161 4.161 17 C -0.017 4.017 18 N -0.341 5.341 19 C 0.298 3.702 20 O -0.461 6.461 21 C -0.099 4.099 22 C -0.079 4.079 23 C -0.389 4.389 24 S 0.406 5.594 25 C -0.292 4.292 26 N -0.207 5.207 27 C -0.001 4.001 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.219 0.781 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.166 0.834 42 H 0.225 0.775 43 H 0.232 0.768 44 H 0.068 0.932 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.541 -23.726 -2.893 25.063 hybrid contribution 0.145 2.062 0.567 2.144 sum 7.687 -21.664 -2.326 23.104 Atomic orbital electron populations 1.70073 1.06358 1.25500 1.54450 1.25432 0.95468 1.00541 1.01248 0.85711 0.78138 0.80985 0.77776 1.20242 1.22026 1.21863 1.18804 0.93758 0.86877 1.36505 0.93582 1.43837 1.49014 1.02021 1.35380 1.21016 0.90576 1.02384 0.84855 1.22897 0.90727 0.88988 0.98589 1.86754 1.56004 1.49731 1.45303 1.20630 0.92512 0.87298 0.93556 0.93273 1.21772 1.00122 0.97419 0.96000 1.21909 0.95757 0.96072 1.02320 1.22069 0.95604 1.04572 0.79482 1.48293 1.57424 1.15568 1.12855 1.21112 0.76689 0.85245 0.87154 1.90684 1.54271 1.82071 1.19045 1.20381 1.02943 0.89821 0.96783 1.19951 0.93651 0.93951 1.00320 1.27211 1.07417 0.98039 1.06276 1.83725 1.19052 1.16959 1.39635 1.28785 1.05486 0.92533 1.02418 1.66041 1.11855 1.33816 1.08947 1.21619 0.97550 0.85055 0.95883 0.94345 0.90666 0.93758 0.93398 0.95800 0.78061 0.93669 0.94122 0.88317 0.91024 0.91085 0.85592 0.85300 0.83421 0.77505 0.76827 0.93153 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.14 11.36 21.65 0.25 -53.89 16 2 C -0.03 -1.75 4.90 84.86 0.42 -1.33 16 3 Si 0.94 47.16 29.61 68.60 2.03 49.19 16 4 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 5 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 6 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 7 C -0.23 -12.67 8.06 84.03 0.68 -11.99 16 8 H 0.05 2.62 6.73 -2.92 -0.02 2.60 16 9 N -0.58 -28.97 2.35 -678.41 -1.59 -30.57 16 10 C 0.14 6.70 5.57 86.38 0.48 7.18 16 11 C 0.07 2.85 7.39 71.98 0.53 3.38 16 12 O -0.57 -25.76 13.40 -148.98 -2.00 -27.76 16 13 C 0.17 6.91 2.77 44.92 0.12 7.04 16 14 H 0.05 1.99 7.87 -2.38 -0.02 1.97 16 15 C -0.11 -4.13 5.12 30.62 0.16 -3.98 16 16 C -0.12 -2.83 6.08 30.67 0.19 -2.64 16 17 C 0.10 2.17 6.35 86.36 0.55 2.72 16 18 N -0.61 -18.53 2.98 -819.76 -2.44 -20.97 16 19 C 0.51 15.79 7.66 87.66 0.67 16.46 16 20 O -0.58 -24.20 14.86 -3.03 -0.04 -24.25 16 21 C -0.06 -1.11 4.54 29.10 0.13 -0.98 16 22 C 0.05 1.22 5.64 41.52 0.23 1.45 16 23 C -0.25 -4.09 11.07 66.78 0.74 -3.35 16 24 S 0.15 2.26 23.22 -56.49 -1.31 0.94 16 25 C 0.01 0.11 12.23 130.65 1.60 1.71 16 26 N -0.49 -13.55 9.68 -191.55 -1.85 -15.41 16 27 C 0.12 5.00 5.74 86.22 0.50 5.49 16 28 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 29 H 0.08 4.23 5.35 -2.39 -0.01 4.22 16 30 H 0.04 2.00 8.04 -2.39 -0.02 1.98 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.37 12.54 9.12 -74.06 -0.68 11.87 16 34 H 0.04 1.84 7.70 -2.39 -0.02 1.82 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.13 1.43 5.93 -2.39 -0.01 1.42 16 40 H 0.13 1.93 7.94 -2.39 -0.02 1.91 16 41 H 0.15 1.58 7.58 -2.38 -0.02 1.57 16 42 H 0.21 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.22 3.05 8.06 -2.91 -0.02 3.03 16 44 H 0.05 2.34 7.01 -2.39 -0.02 2.32 16 45 H 0.05 2.02 6.77 -2.38 -0.02 2.00 16 Total: -1.00 -81.41 375.22 0.36 -81.04 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.34 Total: 20.50 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 6.99 Total: 21.16 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -5.64 Total: -120.83 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -2.04 Total: -52.01 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.31 Total: 0.94 kcal Total: -81.41 0.36 -81.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316747224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.356 kcal (2) G-P(sol) polarization free energy of solvation -81.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds