Wall clock time and date at job start Tue Mar 31 2020 22:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00424 * 2 1 4 4 H 1.48496 * 109.46827 * 239.99939 * 3 2 1 5 5 H 1.48505 * 109.46533 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47100 * 119.99310 * 3 2 1 7 7 C 1.38819 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99618 * 159.26356 * 7 2 1 9 9 N 1.36937 * 120.00182 * 339.26771 * 7 2 1 10 10 C 1.46498 * 119.99771 * 321.84422 * 9 7 2 11 11 C 1.53006 * 109.46785 * 269.99479 * 10 9 7 12 12 O 1.42905 * 109.46627 * 65.00326 * 11 10 9 13 13 C 1.46498 * 119.99771 * 141.83548 * 9 7 2 14 14 H 1.08999 * 109.49714 * 184.48024 * 13 9 7 15 15 C 1.53111 * 109.51330 * 64.42084 * 13 9 7 16 16 C 1.53040 * 109.50364 * 178.67729 * 15 13 9 17 17 C 1.53194 * 109.33389 * 61.35057 * 16 15 13 18 18 N 1.46928 * 108.77867 * 305.34452 * 17 16 15 19 19 C 1.34777 * 120.63378 * 233.63667 * 18 17 16 20 20 O 1.21276 * 119.99944 * 180.02562 * 19 18 17 21 21 C 1.50703 * 119.99644 * 359.97438 * 19 18 17 22 22 C 1.50697 * 109.46622 * 180.02562 * 21 19 18 23 23 C 1.33641 * 126.03942 * 89.99832 * 22 21 19 24 24 N 1.31776 * 114.49986 * 179.97438 * 23 22 21 25 25 C 1.29032 * 117.13078 * 0.02562 * 24 23 22 26 26 S 1.70983 * 110.16013 * 359.71834 * 25 24 23 27 27 C 1.46926 * 118.73700 * 53.60943 * 18 17 16 28 28 H 0.97008 * 119.99384 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47452 * 29.99725 * 10 9 7 30 30 H 1.08998 * 109.47060 * 149.99924 * 10 9 7 31 31 H 1.08996 * 109.46802 * 185.00182 * 11 10 9 32 32 H 1.08998 * 109.47287 * 305.00359 * 11 10 9 33 33 H 0.96706 * 113.99190 * 179.97438 * 12 11 10 34 34 H 1.09006 * 109.50013 * 58.65316 * 15 13 9 35 35 H 1.09003 * 109.44938 * 298.67440 * 15 13 9 36 36 H 1.08998 * 109.50027 * 301.38726 * 16 15 13 37 37 H 1.08993 * 109.49599 * 181.31335 * 16 15 13 38 38 H 1.09001 * 109.59263 * 65.13632 * 17 16 15 39 39 H 1.09001 * 109.58649 * 185.55884 * 17 16 15 40 40 H 1.08999 * 109.47081 * 299.99758 * 21 19 18 41 41 H 1.08996 * 109.47203 * 60.00118 * 21 19 18 42 42 H 1.07999 * 122.74782 * 0.02562 * 23 22 21 43 43 H 1.07995 * 124.91801 * 179.97438 * 25 24 23 44 44 H 1.09003 * 109.58733 * 66.17936 * 27 18 17 45 45 H 1.08997 * 109.59010 * 186.60212 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0377 -1.2327 -0.3306 9 7 1.3920 -2.3496 0.4209 10 6 0.4657 -2.3091 1.5550 11 6 1.2378 -2.5540 2.8531 12 8 2.1524 -1.4783 3.0734 13 6 1.6569 -3.6173 -0.2638 14 1 1.0209 -4.3970 0.1553 15 6 3.1270 -4.0021 -0.0769 16 6 3.3957 -5.3428 -0.7643 17 6 3.1177 -5.2082 -2.2647 18 7 1.7516 -4.6994 -2.4489 19 6 0.8751 -5.3546 -3.2356 20 8 -0.2495 -4.9241 -3.3798 21 6 1.2928 -6.6214 -3.9369 22 6 0.1378 -7.1512 -4.7470 23 6 -0.1343 -6.8480 -6.0198 24 7 -1.2042 -7.4437 -6.5067 25 6 -1.8500 -8.2322 -5.7154 26 16 -1.0880 -8.2856 -4.1857 27 6 1.3591 -3.4632 -1.7586 28 1 -0.4850 0.8402 -0.0004 29 1 -0.0149 -1.3317 1.5970 30 1 -0.2930 -3.0820 1.4323 31 1 0.5379 -2.6124 3.6866 32 1 1.7901 -3.4906 2.7761 33 1 2.6768 -1.5672 3.8810 34 1 3.3480 -4.0887 0.9870 35 1 3.7622 -3.2340 -0.5182 36 1 2.7432 -6.1061 -0.3405 37 1 4.4365 -5.6279 -0.6113 38 1 3.8297 -4.5116 -2.7073 39 1 3.2120 -6.1832 -2.7428 40 1 2.1334 -6.4104 -4.5980 41 1 1.5898 -7.3650 -3.1974 42 1 0.4732 -6.1709 -6.6019 43 1 -2.7404 -8.7822 -5.9821 44 1 1.9278 -2.6243 -2.1598 45 1 0.2932 -3.2869 -1.9026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316750629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:42 Heat of formation + Delta-G solvation = -9.222099 kcal Electronic energy + Delta-G solvation = -27979.975247 eV Core-core repulsion = 24125.418433 eV Total energy + Delta-G solvation = -3854.556815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.14102 -39.39661 -37.48744 -36.16091 -34.60045 -32.97656 -32.13004 -31.20147 -29.76025 -28.02454 -27.11896 -25.26808 -24.39387 -23.79172 -22.35611 -20.82661 -20.28328 -19.82299 -18.75646 -18.01943 -17.07595 -16.55552 -16.39109 -15.95492 -15.26470 -15.06674 -14.67675 -14.46957 -14.27469 -14.02115 -13.87687 -13.65493 -13.54531 -13.22235 -13.02896 -12.80855 -12.59068 -12.50036 -12.14919 -11.90666 -11.32591 -11.28742 -11.20852 -10.86006 -10.74785 -10.62203 -10.47899 -10.11775 -10.03209 -9.87226 -9.75494 -9.69133 -9.61108 -9.27033 -9.07192 -8.95675 -8.38030 -8.22164 -6.50746 -5.69279 -3.27107 0.61166 1.27625 1.65975 2.75162 2.84130 3.32268 3.45182 3.51032 3.56349 4.23316 4.55345 4.56675 4.69580 4.88439 4.96636 5.14598 5.17182 5.22338 5.25686 5.33130 5.43215 5.52305 5.60816 5.69424 5.81198 5.92334 6.04527 6.06637 6.09666 6.16131 6.29702 6.32384 6.53718 6.61755 6.67500 6.75949 6.84015 7.06552 7.11217 7.60820 7.68750 7.74002 7.90443 8.43428 8.48483 8.65207 9.24774 9.89114 10.44350 11.32136 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016206 B = 0.002963 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.289199 B = 9448.851121 C = 9866.868846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.021 3.979 3 Si 0.897 3.103 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.056 0.944 9 N -0.567 5.567 10 C 0.143 3.857 11 C 0.062 3.938 12 O -0.541 6.541 13 C 0.166 3.834 14 H 0.047 0.953 15 C -0.127 4.127 16 C -0.132 4.132 17 C 0.107 3.893 18 N -0.606 5.606 19 C 0.508 3.492 20 O -0.532 6.532 21 C -0.064 4.064 22 C -0.192 4.192 23 C 0.041 3.959 24 N -0.470 5.470 25 C 0.011 3.989 26 S 0.132 5.868 27 C 0.110 3.890 28 H 0.253 0.747 29 H 0.102 0.898 30 H 0.037 0.963 31 H 0.018 0.982 32 H 0.021 0.979 33 H 0.348 0.652 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.173 0.827 43 H 0.197 0.803 44 H 0.077 0.923 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.419 -18.245 -3.843 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.179 4.179 3 Si 0.727 3.273 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.073 0.927 9 N -0.286 5.286 10 C 0.016 3.984 11 C -0.018 4.018 12 O -0.342 6.342 13 C 0.058 3.942 14 H 0.065 0.935 15 C -0.167 4.167 16 C -0.171 4.171 17 C -0.017 4.017 18 N -0.340 5.340 19 C 0.294 3.706 20 O -0.408 6.408 21 C -0.107 4.107 22 C -0.314 4.314 23 C -0.110 4.110 24 N -0.183 5.183 25 C -0.286 4.286 26 S 0.384 5.616 27 C -0.013 4.013 28 H 0.063 0.937 29 H 0.120 0.880 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.190 0.810 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.190 0.810 43 H 0.214 0.786 44 H 0.095 0.905 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.944 -18.104 -4.152 18.806 hybrid contribution 1.213 1.240 0.210 1.747 sum 4.156 -16.864 -3.941 17.810 Atomic orbital electron populations 1.69962 1.05607 1.25710 1.51925 1.25072 0.94844 0.98529 0.99421 0.86478 0.79224 0.83561 0.78008 1.21163 1.21974 1.20758 1.18661 0.93273 0.85151 1.40193 0.92688 1.43645 1.51392 1.03115 1.30471 1.21038 0.90495 1.03337 0.83490 1.23049 0.91279 0.88464 0.99057 1.86886 1.55692 1.46447 1.45182 1.20668 0.93211 0.89607 0.90738 0.93518 1.22033 1.00009 0.94873 0.99798 1.21929 1.01033 0.99376 0.94766 1.21747 0.83624 0.99013 0.97286 1.48340 1.12036 1.26787 1.46824 1.20289 0.85414 0.85133 0.79743 1.90741 1.19898 1.67695 1.62477 1.20120 0.95264 0.96370 0.98944 1.25346 1.02769 1.04981 0.98264 1.21663 0.95334 1.01112 0.92934 1.66288 1.07102 1.08727 1.36208 1.28303 1.04712 1.02514 0.93074 1.83948 1.20494 1.40172 1.17001 1.22298 1.02445 0.83445 0.93096 0.93662 0.88024 0.94480 0.96351 0.96065 0.80957 0.92479 0.91617 0.92163 0.91409 0.91215 0.90647 0.86929 0.87784 0.80967 0.78613 0.90511 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 11.47 55.49 0.64 -25.05 16 2 C 0.02 0.59 4.97 -17.43 -0.09 0.50 16 3 Si 0.90 22.14 29.60 -169.99 -5.03 17.10 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.38 7.49 -15.06 -0.11 -6.49 16 8 H 0.06 1.46 7.08 -52.49 -0.37 1.09 16 9 N -0.57 -13.36 2.34 -165.49 -0.39 -13.74 16 10 C 0.14 3.30 5.70 -4.04 -0.02 3.28 16 11 C 0.06 1.20 7.39 37.16 0.27 1.48 16 12 O -0.54 -11.27 13.13 -35.23 -0.46 -11.74 16 13 C 0.17 3.28 2.79 -67.78 -0.19 3.09 16 14 H 0.05 0.92 7.77 -51.93 -0.40 0.52 16 15 C -0.13 -2.10 5.19 -26.65 -0.14 -2.24 16 16 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 17 C 0.11 1.21 6.34 -3.71 -0.02 1.19 16 18 N -0.61 -9.40 2.97 -172.76 -0.51 -9.91 16 19 C 0.51 7.98 7.69 -10.98 -0.08 7.89 16 20 O -0.53 -10.89 15.45 5.56 0.09 -10.81 16 21 C -0.06 -0.69 4.58 -29.04 -0.13 -0.82 16 22 C -0.19 -2.32 5.09 -35.92 -0.18 -2.50 16 23 C 0.04 0.52 11.25 -19.19 -0.22 0.30 16 24 N -0.47 -6.24 10.54 -15.75 -0.17 -6.41 16 25 C 0.01 0.12 12.23 51.59 0.63 0.75 16 26 S 0.13 1.41 23.22 -107.50 -2.50 -1.09 16 27 C 0.11 2.20 5.70 -3.71 -0.02 2.18 16 28 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.10 2.73 5.53 -51.93 -0.29 2.45 16 30 H 0.04 0.81 7.89 -51.93 -0.41 0.40 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.35 5.28 9.12 45.56 0.42 5.70 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.18 7.22 -51.93 -0.38 0.81 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 40 H 0.11 0.90 7.94 -51.93 -0.41 0.48 16 41 H 0.10 0.87 7.69 -51.93 -0.40 0.47 16 42 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 43 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.08 1.69 7.40 -51.93 -0.38 1.30 16 45 H 0.09 2.10 7.00 -51.93 -0.36 1.74 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -34.36 376.40 -8.95 -43.31 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.82 Total: 5.79 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -0.47 Total: 6.87 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.43 Total: -55.11 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.38 Total: -22.54 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.10 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.50 Total: -1.09 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.36 -8.95 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316750629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.085 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds