Wall clock time and date at job start Tue Mar 31 2020 22:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00592 * 2 1 4 4 H 1.48497 * 109.47367 * 240.00571 * 3 2 1 5 5 H 1.48506 * 109.46925 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47224 * 120.00028 * 3 2 1 7 7 C 1.38813 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00218 * 157.22705 * 7 2 1 9 9 N 1.36945 * 119.99986 * 337.23024 * 7 2 1 10 10 C 1.46500 * 119.99621 * 326.29688 * 9 7 2 11 11 C 1.53001 * 109.47150 * 264.41189 * 10 9 7 12 12 O 1.42900 * 109.46936 * 65.00433 * 11 10 9 13 13 C 1.46496 * 120.00135 * 146.29804 * 9 7 2 14 14 H 1.08997 * 109.49701 * 180.02562 * 13 9 7 15 15 C 1.53046 * 109.49522 * 300.16033 * 13 9 7 16 16 C 1.53352 * 109.60335 * 181.32509 * 15 13 9 17 17 C 1.53187 * 109.15247 * 298.70989 * 16 15 13 18 18 N 1.46932 * 108.88821 * 54.58295 * 17 16 15 19 19 C 1.34781 * 120.62738 * 126.34473 * 18 17 16 20 20 O 1.21284 * 119.99399 * 179.97438 * 19 18 17 21 21 C 1.50691 * 120.00354 * 359.97438 * 19 18 17 22 22 C 1.50701 * 109.47204 * 180.02562 * 21 19 18 23 23 C 1.33640 * 126.03561 * 89.71442 * 22 21 19 24 24 N 1.31780 * 114.49783 * 179.78845 * 23 22 21 25 25 C 1.29030 * 117.12506 * 0.52511 * 24 23 22 26 26 S 1.70976 * 110.16699 * 359.71131 * 25 24 23 27 27 C 1.46926 * 118.73921 * 306.31520 * 18 17 16 28 28 H 0.97002 * 119.99911 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47374 * 24.41166 * 10 9 7 30 30 H 1.09006 * 109.46824 * 144.40945 * 10 9 7 31 31 H 1.08995 * 109.46934 * 185.00451 * 11 10 9 32 32 H 1.08998 * 109.46877 * 304.99875 * 11 10 9 33 33 H 0.96701 * 113.99360 * 180.02562 * 12 11 10 34 34 H 1.08998 * 109.46407 * 301.33769 * 15 13 9 35 35 H 1.08997 * 109.46158 * 61.29861 * 15 13 9 36 36 H 1.09003 * 109.68473 * 178.74601 * 16 15 13 37 37 H 1.08994 * 109.47508 * 58.55748 * 16 15 13 38 38 H 1.08994 * 109.59303 * 294.72485 * 17 16 15 39 39 H 1.09006 * 109.58761 * 174.43494 * 17 16 15 40 40 H 1.09000 * 109.47494 * 300.00407 * 21 19 18 41 41 H 1.08997 * 109.47205 * 60.00334 * 21 19 18 42 42 H 1.07998 * 122.74778 * 359.97438 * 23 22 21 43 43 H 1.08000 * 124.91272 * 179.68173 * 25 24 23 44 44 H 1.08993 * 109.58293 * 173.39792 * 27 18 17 45 45 H 1.09003 * 109.58507 * 293.68456 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0271 -1.2385 -0.3626 9 7 1.4055 -2.3421 0.4580 10 6 0.4395 -2.2676 1.5569 11 6 1.1485 -2.5639 2.8800 12 8 2.1057 -1.5373 3.1478 13 6 1.7245 -3.6360 -0.1504 14 1 1.1503 -4.4209 0.3418 15 6 1.3725 -3.6009 -1.6395 16 6 1.6747 -4.9649 -2.2718 17 6 3.1708 -5.2631 -2.1327 18 7 3.5474 -5.1560 -0.7165 19 6 4.1809 -6.1710 -0.0959 20 8 4.4870 -6.0701 1.0734 21 6 4.5089 -7.4309 -0.8547 22 6 5.2103 -8.4007 0.0612 23 6 4.6220 -9.3233 0.8284 24 7 5.4559 -10.0555 1.5392 25 6 6.7141 -9.7949 1.4221 26 16 6.9502 -8.5133 0.3153 27 6 3.2210 -3.9214 0.0099 28 1 -0.4850 0.8401 0.0004 29 1 0.0063 -1.2680 1.5928 30 1 -0.3510 -3.0006 1.3961 31 1 0.4152 -2.5962 3.6858 32 1 1.6565 -3.5259 2.8124 33 1 2.5943 -1.6609 3.9731 34 1 0.3130 -3.3737 -1.7570 35 1 1.9657 -2.8322 -2.1348 36 1 1.4037 -4.9483 -3.3275 37 1 1.1005 -5.7376 -1.7607 38 1 3.7429 -4.5436 -2.7184 39 1 3.3772 -6.2719 -2.4904 40 1 3.5884 -7.8822 -1.2249 41 1 5.1591 -7.1898 -1.6956 42 1 3.5511 -9.4597 0.8609 43 1 7.5038 -10.3114 1.9475 44 1 3.4581 -4.0456 1.0664 45 1 3.7990 -3.0928 -0.3995 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316750630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:46 Heat of formation + Delta-G solvation = -8.667650 kcal Electronic energy + Delta-G solvation = -28069.993317 eV Core-core repulsion = 24215.460545 eV Total energy + Delta-G solvation = -3854.532772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.22353 -39.46357 -37.51459 -36.16172 -34.62628 -33.04723 -32.10022 -31.28934 -29.72522 -28.09366 -27.14651 -25.32255 -24.35406 -23.93928 -22.20903 -21.02213 -20.30916 -19.73495 -18.87120 -18.05188 -17.13479 -16.52927 -16.49402 -15.91724 -15.55393 -14.86955 -14.74693 -14.39076 -14.33833 -14.08600 -13.99806 -13.80459 -13.52078 -13.15031 -12.91245 -12.87537 -12.76174 -12.41844 -12.27096 -11.99105 -11.38617 -11.29842 -11.01549 -10.94802 -10.79128 -10.63708 -10.39989 -10.24305 -9.91106 -9.89027 -9.81384 -9.76285 -9.54372 -9.34260 -9.06694 -9.01535 -8.49038 -8.25274 -6.57278 -5.72850 -3.23306 0.54809 1.21206 1.59774 2.68906 2.73355 3.23108 3.44285 3.50052 3.57460 4.17211 4.49023 4.55850 4.63178 4.83009 4.94186 5.08830 5.17207 5.23109 5.27428 5.36528 5.37460 5.53278 5.54696 5.69766 5.83124 5.93924 5.99056 6.01065 6.14438 6.19948 6.28064 6.35495 6.49072 6.59897 6.66217 6.79092 6.82617 7.02873 7.17273 7.54597 7.63094 7.70779 7.86380 8.32252 8.47362 8.63911 9.22726 9.88469 10.40952 11.30171 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.002972 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.388596 B = 9420.534090 C = 9841.411690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.016 3.984 3 Si 0.897 3.103 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.058 0.942 9 N -0.568 5.568 10 C 0.142 3.858 11 C 0.058 3.942 12 O -0.544 6.544 13 C 0.167 3.833 14 H 0.048 0.952 15 C -0.122 4.122 16 C -0.134 4.134 17 C 0.106 3.894 18 N -0.604 5.604 19 C 0.510 3.490 20 O -0.536 6.536 21 C -0.065 4.065 22 C -0.193 4.193 23 C 0.041 3.959 24 N -0.470 5.470 25 C 0.011 3.989 26 S 0.132 5.868 27 C 0.103 3.897 28 H 0.253 0.747 29 H 0.109 0.891 30 H 0.035 0.965 31 H 0.020 0.980 32 H 0.022 0.978 33 H 0.350 0.650 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.173 0.827 43 H 0.197 0.803 44 H 0.083 0.917 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.507 -17.202 -3.782 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.183 4.183 3 Si 0.727 3.273 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.075 0.925 9 N -0.287 5.287 10 C 0.016 3.984 11 C -0.022 4.022 12 O -0.345 6.345 13 C 0.058 3.942 14 H 0.066 0.934 15 C -0.161 4.161 16 C -0.173 4.173 17 C -0.017 4.017 18 N -0.337 5.337 19 C 0.296 3.704 20 O -0.413 6.413 21 C -0.107 4.107 22 C -0.314 4.314 23 C -0.110 4.110 24 N -0.183 5.183 25 C -0.286 4.286 26 S 0.384 5.616 27 C -0.020 4.020 28 H 0.063 0.937 29 H 0.127 0.873 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.193 0.807 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.190 0.810 43 H 0.214 0.786 44 H 0.101 0.899 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.033 -16.689 -3.730 19.340 hybrid contribution -0.282 0.513 0.676 0.894 sum 8.750 -16.177 -3.055 18.644 Atomic orbital electron populations 1.69963 1.05546 1.25621 1.52538 1.24921 0.94863 0.98404 1.00135 0.86479 0.79239 0.83521 0.78091 1.21185 1.21973 1.20801 1.18744 0.94243 0.85683 1.38109 0.92487 1.43679 1.49095 1.01307 1.34646 1.21080 0.89977 1.04026 0.83319 1.23084 0.90497 0.89455 0.99181 1.86831 1.55257 1.49007 1.43425 1.20595 0.92013 0.89248 0.92300 0.93361 1.21987 1.02251 0.94427 0.97448 1.22026 0.94628 0.99629 1.00996 1.21783 0.96792 1.01506 0.81622 1.48253 1.57089 1.16790 1.11591 1.20298 0.78380 0.84225 0.87467 1.90719 1.53198 1.81101 1.16312 1.20114 1.01587 0.92183 0.96816 1.25348 0.95839 1.03663 1.06590 1.21669 1.00971 0.93780 0.94559 1.66296 1.01856 1.27599 1.22564 1.28314 0.97145 1.00394 1.02727 1.83962 1.05440 1.32534 1.39668 1.22347 0.98873 0.83425 0.97336 0.93738 0.87341 0.94682 0.96239 0.95968 0.80699 0.91805 0.91250 0.91251 0.92202 0.91170 0.90627 0.86775 0.87723 0.80954 0.78597 0.89866 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.25 11.36 55.49 0.63 -24.62 16 2 C 0.02 0.43 4.90 -17.43 -0.09 0.35 16 3 Si 0.90 22.06 29.61 -169.99 -5.03 17.03 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.26 8.05 -15.06 -0.12 -6.38 16 8 H 0.06 1.52 6.74 -52.48 -0.35 1.16 16 9 N -0.57 -13.42 2.35 -165.52 -0.39 -13.81 16 10 C 0.14 3.32 5.57 -4.04 -0.02 3.30 16 11 C 0.06 1.19 7.39 37.16 0.27 1.47 16 12 O -0.54 -11.87 13.40 -35.23 -0.47 -12.34 16 13 C 0.17 3.29 2.79 -67.81 -0.19 3.10 16 14 H 0.05 0.95 7.87 -51.93 -0.41 0.54 16 15 C -0.12 -2.15 5.12 -26.53 -0.14 -2.29 16 16 C -0.13 -1.68 6.11 -26.45 -0.16 -1.84 16 17 C 0.11 1.20 6.33 -3.71 -0.02 1.17 16 18 N -0.60 -8.91 2.97 -172.77 -0.51 -9.42 16 19 C 0.51 7.51 7.69 -10.99 -0.08 7.42 16 20 O -0.54 -10.19 15.45 5.55 0.09 -10.10 16 21 C -0.06 -0.65 4.58 -29.04 -0.13 -0.78 16 22 C -0.19 -2.19 5.09 -35.92 -0.18 -2.38 16 23 C 0.04 0.50 11.25 -19.18 -0.22 0.28 16 24 N -0.47 -5.91 10.54 -15.75 -0.17 -6.08 16 25 C 0.01 0.12 12.23 51.59 0.63 0.75 16 26 S 0.13 1.32 23.22 -107.50 -2.50 -1.18 16 27 C 0.10 1.93 5.76 -3.71 -0.02 1.91 16 28 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.11 2.92 5.35 -51.93 -0.28 2.64 16 30 H 0.03 0.76 8.04 -51.93 -0.42 0.35 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.35 5.77 9.12 45.56 0.42 6.18 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.35 7.70 -51.93 -0.40 0.95 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.59 5.93 -51.93 -0.31 0.28 16 40 H 0.11 0.86 7.69 -51.93 -0.40 0.46 16 41 H 0.10 0.82 7.94 -51.93 -0.41 0.40 16 42 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.20 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.08 1.76 7.00 -51.93 -0.36 1.40 16 45 H 0.07 1.44 6.79 -51.93 -0.35 1.09 16 LS Contribution 376.56 15.07 5.67 5.67 Total: -1.00 -33.74 376.56 -8.95 -42.68 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.80 Total: 6.08 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -0.47 Total: 6.08 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.44 Total: -53.93 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.39 Total: -22.44 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.50 Total: -1.18 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.74 -8.95 -42.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316750630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.016 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds