Wall clock time and date at job start Tue Mar 31 2020 22:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00592 * 2 1 4 4 H 1.48497 * 109.47367 * 240.00571 * 3 2 1 5 5 H 1.48506 * 109.46925 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47224 * 120.00028 * 3 2 1 7 7 C 1.38813 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00218 * 157.22705 * 7 2 1 9 9 N 1.36945 * 119.99986 * 337.23024 * 7 2 1 10 10 C 1.46500 * 119.99621 * 326.29688 * 9 7 2 11 11 C 1.53001 * 109.47150 * 264.41189 * 10 9 7 12 12 O 1.42900 * 109.46936 * 65.00433 * 11 10 9 13 13 C 1.46496 * 120.00135 * 146.29804 * 9 7 2 14 14 H 1.08997 * 109.49701 * 180.02562 * 13 9 7 15 15 C 1.53046 * 109.49522 * 300.16033 * 13 9 7 16 16 C 1.53352 * 109.60335 * 181.32509 * 15 13 9 17 17 C 1.53187 * 109.15247 * 298.70989 * 16 15 13 18 18 N 1.46932 * 108.88821 * 54.58295 * 17 16 15 19 19 C 1.34781 * 120.62738 * 126.34473 * 18 17 16 20 20 O 1.21284 * 119.99399 * 179.97438 * 19 18 17 21 21 C 1.50691 * 120.00354 * 359.97438 * 19 18 17 22 22 C 1.50701 * 109.47204 * 180.02562 * 21 19 18 23 23 C 1.33640 * 126.03561 * 89.71442 * 22 21 19 24 24 N 1.31780 * 114.49783 * 179.78845 * 23 22 21 25 25 C 1.29030 * 117.12506 * 0.52511 * 24 23 22 26 26 S 1.70976 * 110.16699 * 359.71131 * 25 24 23 27 27 C 1.46926 * 118.73921 * 306.31520 * 18 17 16 28 28 H 0.97002 * 119.99911 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47374 * 24.41166 * 10 9 7 30 30 H 1.09006 * 109.46824 * 144.40945 * 10 9 7 31 31 H 1.08995 * 109.46934 * 185.00451 * 11 10 9 32 32 H 1.08998 * 109.46877 * 304.99875 * 11 10 9 33 33 H 0.96701 * 113.99360 * 180.02562 * 12 11 10 34 34 H 1.08998 * 109.46407 * 301.33769 * 15 13 9 35 35 H 1.08997 * 109.46158 * 61.29861 * 15 13 9 36 36 H 1.09003 * 109.68473 * 178.74601 * 16 15 13 37 37 H 1.08994 * 109.47508 * 58.55748 * 16 15 13 38 38 H 1.08994 * 109.59303 * 294.72485 * 17 16 15 39 39 H 1.09006 * 109.58761 * 174.43494 * 17 16 15 40 40 H 1.09000 * 109.47494 * 300.00407 * 21 19 18 41 41 H 1.08997 * 109.47205 * 60.00334 * 21 19 18 42 42 H 1.07998 * 122.74778 * 359.97438 * 23 22 21 43 43 H 1.08000 * 124.91272 * 179.68173 * 25 24 23 44 44 H 1.08993 * 109.58293 * 173.39792 * 27 18 17 45 45 H 1.09003 * 109.58507 * 293.68456 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0271 -1.2385 -0.3626 9 7 1.4055 -2.3421 0.4580 10 6 0.4395 -2.2676 1.5569 11 6 1.1485 -2.5639 2.8800 12 8 2.1057 -1.5373 3.1478 13 6 1.7245 -3.6360 -0.1504 14 1 1.1503 -4.4209 0.3418 15 6 1.3725 -3.6009 -1.6395 16 6 1.6747 -4.9649 -2.2718 17 6 3.1708 -5.2631 -2.1327 18 7 3.5474 -5.1560 -0.7165 19 6 4.1809 -6.1710 -0.0959 20 8 4.4870 -6.0701 1.0734 21 6 4.5089 -7.4309 -0.8547 22 6 5.2103 -8.4007 0.0612 23 6 4.6220 -9.3233 0.8284 24 7 5.4559 -10.0555 1.5392 25 6 6.7141 -9.7949 1.4221 26 16 6.9502 -8.5133 0.3153 27 6 3.2210 -3.9214 0.0099 28 1 -0.4850 0.8401 0.0004 29 1 0.0063 -1.2680 1.5928 30 1 -0.3510 -3.0006 1.3961 31 1 0.4152 -2.5962 3.6858 32 1 1.6565 -3.5259 2.8124 33 1 2.5943 -1.6609 3.9731 34 1 0.3130 -3.3737 -1.7570 35 1 1.9657 -2.8322 -2.1348 36 1 1.4037 -4.9483 -3.3275 37 1 1.1005 -5.7376 -1.7607 38 1 3.7429 -4.5436 -2.7184 39 1 3.3772 -6.2719 -2.4904 40 1 3.5884 -7.8822 -1.2249 41 1 5.1591 -7.1898 -1.6956 42 1 3.5511 -9.4597 0.8609 43 1 7.5038 -10.3114 1.9475 44 1 3.4581 -4.0456 1.0664 45 1 3.7990 -3.0928 -0.3995 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316750630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:45 Heat of formation + Delta-G solvation = -33.268287 kcal Electronic energy + Delta-G solvation = -28071.060080 eV Core-core repulsion = 24215.460545 eV Total energy + Delta-G solvation = -3855.599536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.32861 -40.39712 -38.99777 -37.72408 -36.28412 -34.14577 -33.47161 -32.88630 -31.25200 -29.35810 -28.58694 -26.42327 -25.95955 -25.14261 -23.59696 -22.45519 -21.59720 -20.99807 -20.01435 -18.90583 -18.43445 -18.27571 -18.03962 -16.99850 -16.90534 -16.41005 -16.07582 -15.93455 -15.52040 -15.38046 -15.23312 -14.84421 -14.80735 -14.49376 -14.32367 -14.15495 -13.90662 -13.77561 -13.56009 -13.24862 -13.08545 -12.83794 -12.68874 -12.48334 -12.33503 -12.14237 -11.94948 -11.72360 -11.59577 -11.58548 -11.25596 -10.95775 -10.73141 -10.61992 -10.41528 -10.17388 -9.84263 -9.63988 -8.51429 -7.76837 -5.28989 -0.24458 0.46400 0.81797 1.44533 1.50323 1.56715 1.63027 1.81625 2.12913 2.57456 3.34701 3.43687 3.53648 3.60710 3.74539 3.80268 4.08640 4.15420 4.16572 4.18213 4.33236 4.39781 4.45820 4.49753 4.51812 4.65227 4.67651 4.77387 4.81633 4.87530 4.93812 4.98833 5.02239 5.11737 5.20045 5.26185 5.48645 5.54821 5.66078 5.72652 5.81311 6.49968 6.51701 6.75545 7.11075 7.18855 7.23729 7.93339 8.42135 9.22243 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.002972 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.388596 B = 9420.534090 C = 9841.411690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.031 4.031 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.049 0.951 9 N -0.582 5.582 10 C 0.138 3.862 11 C 0.068 3.932 12 O -0.573 6.573 13 C 0.167 3.833 14 H 0.049 0.951 15 C -0.114 4.114 16 C -0.123 4.123 17 C 0.103 3.897 18 N -0.604 5.604 19 C 0.507 3.493 20 O -0.586 6.586 21 C -0.054 4.054 22 C -0.209 4.209 23 C 0.026 3.974 24 N -0.504 5.504 25 C 0.013 3.987 26 S 0.146 5.854 27 C 0.122 3.878 28 H 0.247 0.753 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.025 0.975 33 H 0.373 0.627 34 H 0.038 0.962 35 H 0.046 0.954 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.149 0.851 41 H 0.136 0.864 42 H 0.180 0.820 43 H 0.227 0.773 44 H 0.053 0.947 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.692 -19.496 -5.269 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.228 4.228 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.218 1.218 7 C -0.359 4.359 8 H 0.067 0.933 9 N -0.302 5.302 10 C 0.011 3.989 11 C -0.012 4.012 12 O -0.378 6.378 13 C 0.059 3.941 14 H 0.067 0.933 15 C -0.153 4.153 16 C -0.162 4.162 17 C -0.019 4.019 18 N -0.337 5.337 19 C 0.296 3.704 20 O -0.466 6.466 21 C -0.096 4.096 22 C -0.331 4.331 23 C -0.124 4.124 24 N -0.217 5.217 25 C -0.284 4.284 26 S 0.399 5.601 27 C -0.003 4.003 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.220 0.780 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.145 0.855 40 H 0.166 0.834 41 H 0.154 0.846 42 H 0.197 0.803 43 H 0.243 0.757 44 H 0.071 0.929 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.241 -19.016 -5.248 22.227 hybrid contribution -0.587 1.157 1.210 1.774 sum 9.654 -17.859 -4.039 20.699 Atomic orbital electron populations 1.70074 1.06423 1.25484 1.54480 1.25441 0.95441 1.00588 1.01284 0.85711 0.78120 0.80963 0.77813 1.20133 1.22233 1.21828 1.18821 0.93819 0.86769 1.36462 0.93327 1.43839 1.48996 1.02083 1.35316 1.21013 0.90592 1.02335 0.84924 1.22887 0.90732 0.89044 0.98511 1.86750 1.55949 1.49697 1.45363 1.20716 0.92605 0.87289 0.93461 0.93287 1.21829 1.00088 0.97407 0.96016 1.21968 0.95892 0.96048 1.02280 1.22099 0.95645 1.04747 0.79362 1.48290 1.57126 1.15380 1.12867 1.21163 0.76983 0.85149 0.87104 1.90701 1.55028 1.82108 1.18809 1.20201 1.03740 0.89166 0.96503 1.25561 0.96576 1.03871 1.07048 1.21914 1.01570 0.94200 0.94754 1.66324 1.02895 1.28799 1.23732 1.28877 0.97193 1.00101 1.02213 1.83886 1.04773 1.32107 1.39310 1.21758 0.97516 0.84958 0.96055 0.94393 0.90727 0.93865 0.93546 0.95662 0.78044 0.94329 0.93514 0.88348 0.91165 0.90632 0.85534 0.83354 0.84580 0.80257 0.75688 0.92856 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.57 11.36 21.65 0.25 -53.33 16 2 C -0.03 -1.76 4.90 84.86 0.42 -1.34 16 3 Si 0.94 46.31 29.61 68.60 2.03 48.34 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 7 C -0.23 -12.31 8.05 84.03 0.68 -11.63 16 8 H 0.05 2.67 6.74 -2.91 -0.02 2.65 16 9 N -0.58 -28.21 2.35 -677.59 -1.59 -29.80 16 10 C 0.14 6.57 5.57 86.38 0.48 7.05 16 11 C 0.07 2.80 7.39 71.98 0.53 3.33 16 12 O -0.57 -25.14 13.40 -148.98 -2.00 -27.14 16 13 C 0.17 6.61 2.79 45.07 0.13 6.74 16 14 H 0.05 1.92 7.87 -2.39 -0.02 1.90 16 15 C -0.11 -3.99 5.12 30.73 0.16 -3.83 16 16 C -0.12 -2.69 6.11 30.77 0.19 -2.50 16 17 C 0.10 1.90 6.33 86.36 0.55 2.45 16 18 N -0.60 -16.60 2.97 -818.91 -2.44 -19.04 16 19 C 0.51 13.81 7.69 87.65 0.67 14.49 16 20 O -0.59 -21.97 15.45 -3.04 -0.05 -22.02 16 21 C -0.05 -0.87 4.58 29.10 0.13 -0.74 16 22 C -0.21 -4.22 5.09 24.64 0.13 -4.09 16 23 C 0.03 0.59 11.25 83.66 0.94 1.53 16 24 N -0.50 -11.95 10.54 -203.75 -2.15 -14.10 16 25 C 0.01 0.23 12.23 130.65 1.60 1.83 16 26 S 0.15 2.61 23.22 -56.49 -1.31 1.30 16 27 C 0.12 4.60 5.76 86.36 0.50 5.10 16 28 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.07 4.15 5.35 -2.39 -0.01 4.13 16 30 H 0.04 1.92 8.04 -2.38 -0.02 1.91 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.37 12.17 9.12 -74.06 -0.68 11.49 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.83 7.70 -2.39 -0.02 1.81 16 36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.13 1.15 5.93 -2.38 -0.01 1.13 16 40 H 0.15 1.40 7.69 -2.39 -0.02 1.38 16 41 H 0.14 1.37 7.94 -2.39 -0.02 1.35 16 42 H 0.18 3.47 8.06 -2.91 -0.02 3.45 16 43 H 0.23 2.37 8.06 -2.91 -0.02 2.35 16 44 H 0.05 2.32 7.00 -2.39 -0.02 2.30 16 45 H 0.05 2.07 6.79 -2.39 -0.02 2.05 16 Total: -1.00 -77.66 376.56 0.18 -77.48 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.34 Total: 19.92 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 7.09 Total: 18.39 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -5.93 Total: -116.27 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -2.04 Total: -49.16 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.31 Total: 1.30 kcal Total: -77.66 0.18 -77.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316750630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.211 kcal (2) G-P(sol) polarization free energy of solvation -77.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds