Wall clock time and date at job start Tue Mar 31 2020 22:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86803 * 120.00256 * 2 1 4 4 H 1.48498 * 109.46911 * 240.00257 * 3 2 1 5 5 H 1.48496 * 109.46816 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47157 * 119.99973 * 3 2 1 7 7 C 1.38801 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99814 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99751 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47295 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99798 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99898 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99654 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46926 * 204.99615 * 14 13 11 16 16 C 1.52998 * 109.47311 * 299.99821 * 15 14 13 17 17 C 1.53004 * 109.47118 * 300.00152 * 16 15 14 18 18 N 1.46903 * 109.47091 * 179.97438 * 17 16 15 19 19 C 1.46893 * 110.99924 * 154.99688 * 18 17 16 20 20 C 1.50706 * 109.47176 * 179.97438 * 19 18 17 21 21 C 1.41372 * 126.79827 * 95.00032 * 20 19 18 22 22 C 1.35455 * 103.98495 * 180.02562 * 21 20 19 23 23 O 1.34035 * 106.44697 * 0.02562 * 22 21 20 24 24 N 1.20931 * 111.56667 * 359.70935 * 23 22 21 25 25 C 1.52999 * 109.47154 * 59.99752 * 17 16 15 26 26 C 1.52998 * 109.47311 * 300.00130 * 25 17 16 27 27 H 0.97004 * 119.99651 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.46873 * 60.00264 * 10 9 7 29 29 H 1.08992 * 109.47407 * 300.00117 * 10 9 7 30 30 H 0.96999 * 120.00517 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.47247 * 324.99488 * 14 13 11 32 32 H 1.09008 * 109.47197 * 179.97438 * 15 14 13 33 33 H 1.08998 * 109.47509 * 60.00380 * 15 14 13 34 34 H 1.09003 * 109.47230 * 179.97438 * 16 15 14 35 35 H 1.08999 * 109.47046 * 59.99901 * 16 15 14 36 36 H 1.08999 * 109.46957 * 299.99804 * 17 16 15 37 37 H 1.00893 * 110.99793 * 278.95718 * 18 17 16 38 38 H 1.09001 * 109.46739 * 60.00281 * 19 18 17 39 39 H 1.09000 * 109.47767 * 300.00540 * 19 18 17 40 40 H 1.07999 * 128.01171 * 359.96868 * 21 20 19 41 41 H 1.08004 * 126.77803 * 179.97438 * 22 21 20 42 42 H 1.09008 * 109.47197 * 59.99968 * 25 17 16 43 43 H 1.08996 * 109.46853 * 179.97438 * 25 17 16 44 44 H 1.08999 * 109.47046 * 300.00099 * 26 25 17 45 45 H 1.08994 * 109.47402 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2855 2.7464 -0.0006 6 1 3.1042 1.6963 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8439 -6.3432 0.0018 14 6 2.3301 -7.7151 0.0019 15 6 3.3753 -8.6511 0.6121 16 6 4.6611 -8.5881 -0.2148 17 6 4.3650 -9.0219 -1.6518 18 7 5.5995 -8.9609 -2.4459 19 6 5.5357 -9.8806 -3.5895 20 6 6.8162 -9.7899 -4.3790 21 6 7.9499 -10.6250 -4.2527 22 6 8.8189 -10.1385 -5.1708 23 8 8.2056 -9.1042 -5.7631 24 7 7.0958 -8.9298 -5.3153 25 6 3.3198 -8.0860 -2.2621 26 6 2.0341 -8.1489 -1.4352 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7314 0.8906 29 1 3.1243 -3.7315 -0.8894 30 1 3.8007 -6.1836 0.0015 31 1 1.4141 -7.7600 0.5910 32 1 2.9928 -9.6719 0.6126 33 1 3.5862 -8.3421 1.6359 34 1 5.4059 -9.2546 0.2203 35 1 5.0433 -7.5674 -0.2148 36 1 3.9828 -10.0427 -1.6517 37 1 5.7871 -8.0175 -2.7504 38 1 4.6955 -9.6083 -4.2282 39 1 5.4023 -10.9004 -3.2288 40 1 8.0909 -11.4576 -3.5794 41 1 9.8105 -10.5100 -5.3832 42 1 3.7021 -7.0651 -2.2621 43 1 3.1093 -8.3948 -3.2860 44 1 1.6518 -9.1697 -1.4351 45 1 1.2893 -7.4825 -1.8702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317215883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:09 Heat of formation + Delta-G solvation = 13.815010 kcal Electronic energy + Delta-G solvation = -26316.992423 eV Core-core repulsion = 22463.434572 eV Total energy + Delta-G solvation = -3853.557851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.29723 -40.18262 -38.35737 -36.29019 -34.24383 -32.55520 -32.41047 -31.94164 -31.03658 -29.83108 -28.20523 -25.84310 -25.43427 -23.51072 -22.89987 -21.98917 -21.42692 -20.94473 -19.28324 -18.18991 -17.91164 -17.87396 -16.59128 -16.24222 -15.86974 -15.48742 -15.27585 -15.14939 -14.79089 -14.42346 -14.24126 -13.99716 -13.88557 -13.46384 -13.30068 -13.12686 -12.75574 -12.60111 -12.54678 -12.36592 -12.16224 -11.90017 -11.67858 -11.36735 -11.03375 -11.03007 -10.97339 -10.78415 -10.72370 -10.63561 -10.38685 -10.03641 -9.80624 -9.35111 -9.04984 -8.87208 -8.75475 -8.22518 -6.48437 -6.20285 -3.90699 1.13040 1.80991 2.89408 3.06919 3.13195 3.24567 3.28624 3.33118 3.61210 3.76285 3.95296 4.14090 4.21972 4.44086 4.53219 4.70276 4.76154 4.85940 4.91242 4.93699 5.02511 5.12683 5.14699 5.17354 5.21008 5.24132 5.33292 5.35687 5.42866 5.58117 5.61227 5.66087 5.82786 5.88703 5.90047 5.93413 5.94875 6.09609 6.15719 6.19740 6.57722 6.73467 6.90583 7.60552 7.76327 7.88701 8.36332 8.66177 9.24896 10.87048 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.002181 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.470041 B =12836.576716 C =14510.203003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.731 5.731 14 C 0.146 3.854 15 C -0.125 4.125 16 C -0.106 4.106 17 C 0.089 3.911 18 N -0.680 5.680 19 C 0.137 3.863 20 C 0.018 3.982 21 C -0.219 4.219 22 C -0.063 4.063 23 O 0.101 5.899 24 N -0.360 5.360 25 C -0.148 4.148 26 C -0.126 4.126 27 H 0.269 0.731 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.396 0.604 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.346 0.654 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.171 0.829 41 H 0.216 0.784 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.118 -26.190 -5.783 31.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.387 5.387 14 C 0.041 3.959 15 C -0.164 4.164 16 C -0.144 4.144 17 C -0.020 4.020 18 N -0.311 5.311 19 C 0.008 3.992 20 C -0.141 4.141 21 C -0.241 4.241 22 C -0.145 4.145 23 O 0.033 5.967 24 N -0.064 5.064 25 C -0.187 4.187 26 C -0.166 4.166 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.231 0.769 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.165 0.835 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.189 0.811 41 H 0.233 0.767 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.610 -25.850 -5.945 30.282 hybrid contribution 2.226 1.101 -0.173 2.490 sum 16.837 -24.748 -6.118 30.551 Atomic orbital electron populations 1.70013 1.05936 1.27534 1.46825 1.24994 0.95035 0.99015 0.94554 0.86226 0.79240 0.81253 0.78802 1.19954 1.20810 1.19932 1.22829 0.94865 0.91710 1.58999 0.91021 1.85375 1.04958 0.96271 1.96710 1.23538 1.06524 0.95625 1.04784 1.20296 0.86594 0.86307 0.74977 1.90691 1.15374 1.85600 1.47632 1.46133 1.09761 1.05270 1.77494 1.20858 0.97643 0.81282 0.96122 1.21823 0.95168 0.99853 0.99537 1.21478 0.97289 1.01966 0.93703 1.21645 0.87557 0.99475 0.93356 1.60633 1.36012 1.12306 1.22128 1.20206 0.90066 0.98798 0.90177 1.23555 0.99145 0.94499 0.96921 1.22721 0.93494 1.04496 1.03361 1.26052 1.01164 0.90869 0.96369 1.84857 1.20541 1.41095 1.50178 1.73896 0.97656 1.22017 1.12811 1.22227 0.96640 1.00646 0.99154 1.21854 0.97372 1.01719 0.95606 0.92149 0.89331 0.89414 0.76938 0.89361 0.90496 0.90856 0.90898 0.91881 0.90189 0.83512 0.93149 0.88742 0.81104 0.76729 0.91322 0.92264 0.91293 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.54 -15.42 9.50 30.94 0.29 -15.13 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 11 C 0.53 9.87 7.81 -10.99 -0.09 9.78 16 12 O -0.52 -11.69 15.52 5.56 0.09 -11.60 16 13 N -0.73 -9.57 4.23 -53.80 -0.23 -9.80 16 14 C 0.15 1.63 2.78 -67.93 -0.19 1.44 16 15 C -0.13 -0.99 5.61 -26.73 -0.15 -1.14 16 16 C -0.11 -0.78 5.36 -26.73 -0.14 -0.93 16 17 C 0.09 0.67 2.47 -67.71 -0.17 0.50 16 18 N -0.68 -5.39 6.24 -107.99 -0.67 -6.06 16 19 C 0.14 1.03 6.07 -4.98 -0.03 1.00 16 20 C 0.02 0.16 6.84 -82.10 -0.56 -0.41 16 21 C -0.22 -1.36 11.12 -39.38 -0.44 -1.80 16 22 C -0.06 -0.33 12.30 29.74 0.37 0.03 16 23 O 0.10 0.88 11.20 17.19 0.19 1.07 16 24 N -0.36 -3.80 12.07 33.42 0.40 -3.39 16 25 C -0.15 -1.38 5.01 -26.73 -0.13 -1.51 16 26 C -0.13 -1.34 5.60 -26.73 -0.15 -1.49 16 27 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 29 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 30 H 0.40 4.27 6.87 -40.82 -0.28 3.99 16 31 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 32 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.50 6.50 -51.93 -0.34 0.16 16 36 H 0.08 0.55 7.80 -51.93 -0.41 0.15 16 37 H 0.35 3.12 8.46 -39.30 -0.33 2.79 16 38 H 0.05 0.41 7.43 -51.93 -0.39 0.02 16 39 H 0.09 0.56 8.06 -51.93 -0.42 0.14 16 40 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.22 0.17 8.06 -52.48 -0.42 -0.25 16 42 H 0.07 0.74 7.59 -51.92 -0.39 0.34 16 43 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -35.54 383.02 -8.90 -44.44 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.68 Total: 3.01 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -1.26 Total: -10.54 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.24 Total: -44.91 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.28 Total: -10.53 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.54 -8.90 -44.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317215883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.251 kcal (2) G-P(sol) polarization free energy of solvation -35.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds