Wall clock time and date at job start Tue Mar 31 2020 22:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86803 * 120.00256 * 2 1 4 4 H 1.48498 * 109.46911 * 240.00257 * 3 2 1 5 5 H 1.48496 * 109.46816 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47157 * 119.99973 * 3 2 1 7 7 C 1.38801 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99814 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99751 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47295 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99798 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99898 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99654 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46926 * 204.99615 * 14 13 11 16 16 C 1.52998 * 109.47311 * 299.99821 * 15 14 13 17 17 C 1.53004 * 109.47118 * 300.00152 * 16 15 14 18 18 N 1.46903 * 109.47091 * 179.97438 * 17 16 15 19 19 C 1.46893 * 110.99924 * 154.99688 * 18 17 16 20 20 C 1.50706 * 109.47176 * 179.97438 * 19 18 17 21 21 C 1.41372 * 126.79827 * 95.00032 * 20 19 18 22 22 C 1.35455 * 103.98495 * 180.02562 * 21 20 19 23 23 O 1.34035 * 106.44697 * 0.02562 * 22 21 20 24 24 N 1.20931 * 111.56667 * 359.70935 * 23 22 21 25 25 C 1.52999 * 109.47154 * 59.99752 * 17 16 15 26 26 C 1.52998 * 109.47311 * 300.00130 * 25 17 16 27 27 H 0.97004 * 119.99651 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.46873 * 60.00264 * 10 9 7 29 29 H 1.08992 * 109.47407 * 300.00117 * 10 9 7 30 30 H 0.96999 * 120.00517 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.47247 * 324.99488 * 14 13 11 32 32 H 1.09008 * 109.47197 * 179.97438 * 15 14 13 33 33 H 1.08998 * 109.47509 * 60.00380 * 15 14 13 34 34 H 1.09003 * 109.47230 * 179.97438 * 16 15 14 35 35 H 1.08999 * 109.47046 * 59.99901 * 16 15 14 36 36 H 1.08999 * 109.46957 * 299.99804 * 17 16 15 37 37 H 1.00893 * 110.99793 * 278.95718 * 18 17 16 38 38 H 1.09001 * 109.46739 * 60.00281 * 19 18 17 39 39 H 1.09000 * 109.47767 * 300.00540 * 19 18 17 40 40 H 1.07999 * 128.01171 * 359.96868 * 21 20 19 41 41 H 1.08004 * 126.77803 * 179.97438 * 22 21 20 42 42 H 1.09008 * 109.47197 * 59.99968 * 25 17 16 43 43 H 1.08996 * 109.46853 * 179.97438 * 25 17 16 44 44 H 1.08999 * 109.47046 * 300.00099 * 26 25 17 45 45 H 1.08994 * 109.47402 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2855 2.7464 -0.0006 6 1 3.1042 1.6963 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8439 -6.3432 0.0018 14 6 2.3301 -7.7151 0.0019 15 6 3.3753 -8.6511 0.6121 16 6 4.6611 -8.5881 -0.2148 17 6 4.3650 -9.0219 -1.6518 18 7 5.5995 -8.9609 -2.4459 19 6 5.5357 -9.8806 -3.5895 20 6 6.8162 -9.7899 -4.3790 21 6 7.9499 -10.6250 -4.2527 22 6 8.8189 -10.1385 -5.1708 23 8 8.2056 -9.1042 -5.7631 24 7 7.0958 -8.9298 -5.3153 25 6 3.3198 -8.0860 -2.2621 26 6 2.0341 -8.1489 -1.4352 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7314 0.8906 29 1 3.1243 -3.7315 -0.8894 30 1 3.8007 -6.1836 0.0015 31 1 1.4141 -7.7600 0.5910 32 1 2.9928 -9.6719 0.6126 33 1 3.5862 -8.3421 1.6359 34 1 5.4059 -9.2546 0.2203 35 1 5.0433 -7.5674 -0.2148 36 1 3.9828 -10.0427 -1.6517 37 1 5.7871 -8.0175 -2.7504 38 1 4.6955 -9.6083 -4.2282 39 1 5.4023 -10.9004 -3.2288 40 1 8.0909 -11.4576 -3.5794 41 1 9.8105 -10.5100 -5.3832 42 1 3.7021 -7.0651 -2.2621 43 1 3.1093 -8.3948 -3.2860 44 1 1.6518 -9.1697 -1.4351 45 1 1.2893 -7.4825 -1.8702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317215883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:08 Heat of formation + Delta-G solvation = -11.839379 kcal Electronic energy + Delta-G solvation = -26318.104880 eV Core-core repulsion = 22463.434572 eV Total energy + Delta-G solvation = -3854.670309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.85822 -41.26338 -39.48318 -37.08714 -35.03416 -34.60079 -33.53791 -32.52711 -31.78761 -31.04635 -29.31221 -27.67387 -26.48467 -24.02993 -23.65324 -22.81288 -22.22609 -21.85417 -20.25333 -19.88597 -18.72239 -18.50594 -17.97030 -17.27782 -16.89749 -16.79687 -16.48367 -16.12904 -15.99914 -15.64039 -15.45642 -15.10079 -14.59867 -14.51969 -14.45503 -14.04161 -14.01326 -13.58160 -13.34385 -13.22764 -13.18793 -13.05158 -12.96465 -12.88068 -12.61029 -12.24430 -12.10831 -11.77386 -11.76503 -11.40699 -11.39509 -11.14669 -11.03050 -10.91984 -10.53444 -10.30386 -10.05577 -9.43864 -8.68574 -8.36219 -6.14503 0.65278 1.25556 1.30610 1.42303 1.45293 1.55485 1.62500 2.25326 2.32623 2.50881 2.97559 3.06312 3.30763 3.37570 3.64968 3.73569 3.77285 3.90380 4.04232 4.13322 4.23511 4.27813 4.28630 4.41382 4.46992 4.47440 4.50135 4.53761 4.59521 4.64985 4.69597 4.85987 4.94889 5.03566 5.09779 5.14069 5.20632 5.24106 5.33595 5.39489 5.41222 5.59320 5.97600 6.17735 6.21774 6.52208 7.04701 7.26711 7.37644 8.72727 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.002181 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.470041 B =12836.576716 C =14510.203003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.081 0.919 9 S -0.149 6.149 10 C -0.131 4.131 11 C 0.534 3.466 12 O -0.565 6.565 13 N -0.705 5.705 14 C 0.142 3.858 15 C -0.113 4.113 16 C -0.102 4.102 17 C 0.098 3.902 18 N -0.676 5.676 19 C 0.138 3.862 20 C 0.004 3.996 21 C -0.228 4.228 22 C -0.051 4.051 23 O 0.082 5.918 24 N -0.404 5.404 25 C -0.141 4.141 26 C -0.122 4.122 27 H 0.271 0.729 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.411 0.589 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.338 0.662 38 H 0.038 0.962 39 H 0.115 0.885 40 H 0.196 0.804 41 H 0.259 0.741 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.092 0.908 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.453 -27.971 -5.292 35.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.696 4.696 8 H 0.099 0.901 9 S 0.078 5.922 10 C -0.282 4.282 11 C 0.320 3.680 12 O -0.444 6.444 13 N -0.360 5.360 14 C 0.037 3.963 15 C -0.152 4.152 16 C -0.140 4.140 17 C -0.012 4.012 18 N -0.306 5.306 19 C 0.009 3.991 20 C -0.154 4.154 21 C -0.249 4.249 22 C -0.131 4.131 23 O 0.017 5.983 24 N -0.111 5.111 25 C -0.180 4.180 26 C -0.161 4.161 27 H 0.080 0.920 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.248 0.752 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.156 0.844 38 H 0.056 0.944 39 H 0.133 0.867 40 H 0.213 0.787 41 H 0.275 0.725 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 18.009 -27.678 -5.457 33.469 hybrid contribution 1.256 1.488 -0.357 1.979 sum 19.264 -26.190 -5.814 33.028 Atomic orbital electron populations 1.70181 1.07945 1.28681 1.47890 1.26145 0.96002 1.03340 0.93717 0.85002 0.77820 0.75677 0.79494 1.18786 1.20273 1.18549 1.23168 0.95296 0.92082 1.59034 0.90055 1.85542 1.10497 0.99141 1.97036 1.23385 1.03545 0.94860 1.06426 1.20018 0.86338 0.86646 0.75039 1.90680 1.17357 1.86063 1.50286 1.45927 1.09898 1.05119 1.75033 1.21077 0.98200 0.80463 0.96515 1.21777 0.94104 0.99871 0.99403 1.21456 0.97158 1.02030 0.93333 1.21613 0.86731 0.99650 0.93204 1.60687 1.35792 1.11854 1.22277 1.20283 0.89396 0.99629 0.89818 1.23918 1.00162 0.94709 0.96652 1.23078 0.92686 1.04995 1.04172 1.26908 1.02249 0.89067 0.94903 1.84800 1.20355 1.42394 1.50742 1.73898 0.98867 1.23844 1.14445 1.22172 0.96489 1.00342 0.99020 1.21796 0.97155 1.02076 0.95080 0.91969 0.87371 0.87814 0.75167 0.91475 0.88189 0.90314 0.89449 0.92447 0.88530 0.84448 0.94360 0.86678 0.78714 0.72519 0.93022 0.92565 0.88928 0.94778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.73 13.22 21.65 0.29 -56.44 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 44.28 29.55 68.60 2.03 46.31 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 7 C -0.55 -31.90 9.50 67.95 0.65 -31.25 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 10 C -0.13 -5.35 6.16 71.24 0.44 -4.91 16 11 C 0.53 20.09 7.81 87.66 0.68 20.77 16 12 O -0.57 -26.59 15.52 -3.03 -0.05 -26.63 16 13 N -0.71 -17.97 4.23 -442.52 -1.87 -19.84 16 14 C 0.14 3.03 2.78 44.99 0.13 3.15 16 15 C -0.11 -1.44 5.61 30.59 0.17 -1.27 16 16 C -0.10 -1.18 5.36 30.59 0.16 -1.01 16 17 C 0.10 1.22 2.47 44.92 0.11 1.33 16 18 N -0.68 -9.44 6.24 -495.57 -3.09 -12.53 16 19 C 0.14 1.86 6.07 85.56 0.52 2.38 16 20 C 0.00 0.07 6.84 43.58 0.30 0.36 16 21 C -0.23 -2.29 11.12 22.40 0.25 -2.04 16 22 C -0.05 -0.41 12.30 67.18 0.83 0.41 16 23 O 0.08 1.38 11.20 71.66 0.80 2.18 16 24 N -0.40 -8.47 12.07 -49.55 -0.60 -9.07 16 25 C -0.14 -2.51 5.01 30.59 0.15 -2.36 16 26 C -0.12 -2.54 5.60 30.59 0.17 -2.37 16 27 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 29 H 0.10 3.90 8.14 -2.40 -0.02 3.88 16 30 H 0.41 8.16 6.87 -92.71 -0.64 7.52 16 31 H 0.07 1.78 7.58 -2.39 -0.02 1.76 16 32 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.75 6.50 -2.39 -0.02 0.73 16 36 H 0.10 0.97 7.80 -2.39 -0.02 0.95 16 37 H 0.34 5.79 8.46 -89.70 -0.76 5.03 16 38 H 0.04 0.60 7.43 -2.39 -0.02 0.59 16 39 H 0.12 1.04 8.06 -2.39 -0.02 1.02 16 40 H 0.20 0.84 8.06 -2.91 -0.02 0.82 16 41 H 0.26 -0.57 8.06 -2.91 -0.02 -0.59 16 42 H 0.05 1.09 7.59 -2.38 -0.02 1.07 16 43 H 0.06 1.04 7.45 -2.39 -0.02 1.02 16 44 H 0.09 1.49 8.14 -2.39 -0.02 1.48 16 45 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -81.94 383.02 0.99 -80.95 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -0.38 Total: 20.30 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 5.02 Total: -15.59 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -5.28 Total: -97.89 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: 0.76 Total: -24.45 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -81.94 0.99 -80.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317215883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.112 kcal (2) G-P(sol) polarization free energy of solvation -81.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds