Wall clock time and date at job start Tue Mar 31 2020 23:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20233 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47167 * 89.99892 * 6 5 4 8 8 O 1.21283 * 120.00356 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00007 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00315 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47227 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47099 * 179.97438 * 11 10 9 13 13 C 1.46899 * 110.99846 * 66.04763 * 12 11 10 14 14 C 1.46899 * 111.00191 * 190.00302 * 12 11 10 15 15 C 1.50699 * 109.47414 * 169.99769 * 14 12 11 16 16 O 1.21293 * 119.99535 * 0.02562 * 15 14 12 17 17 N 1.34774 * 120.00083 * 179.97438 * 15 14 12 18 18 C 1.37098 * 119.99940 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00080 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00007 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99807 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99950 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47178 * 89.99763 * 22 20 18 24 24 H 1.48497 * 109.47014 * 210.00030 * 22 20 18 25 25 H 1.48496 * 109.47191 * 329.99947 * 22 20 18 26 26 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 27 27 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 30 30 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 31 31 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 32 32 H 1.09010 * 109.46884 * 209.99886 * 6 5 4 33 33 H 1.09002 * 109.47203 * 329.99303 * 6 5 4 34 34 H 0.97005 * 119.99811 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.47012 * 299.99838 * 10 9 7 36 36 H 1.09004 * 109.47200 * 60.00185 * 10 9 7 37 37 H 1.08997 * 109.47320 * 300.00051 * 11 10 9 38 38 H 1.09001 * 109.46765 * 60.00680 * 11 10 9 39 39 H 1.09004 * 109.47180 * 60.00430 * 13 12 11 40 40 H 1.09005 * 109.46603 * 179.97438 * 13 12 11 41 41 H 1.08999 * 109.47484 * 299.99847 * 13 12 11 42 42 H 1.09001 * 109.47062 * 290.00420 * 14 12 11 43 43 H 1.09008 * 109.47298 * 49.99894 * 14 12 11 44 44 H 0.97000 * 120.00205 * 0.02562 * 17 15 14 45 45 H 0.96999 * 119.99735 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3861 -0.9770 0.0005 7 6 5.8564 -1.1535 1.4212 8 8 5.1187 -0.8763 2.3431 9 7 7.0973 -1.6184 1.6674 10 6 7.5547 -1.7895 3.0486 11 6 8.9872 -2.3270 3.0485 12 7 9.4461 -2.4980 4.4335 13 6 8.6789 -3.5481 5.1165 14 6 10.8863 -2.7839 4.4794 15 6 11.3680 -2.7098 5.9054 16 8 10.5881 -2.4453 6.7959 17 7 12.6651 -2.9384 6.1913 18 6 13.1032 -2.8716 7.4887 19 1 12.4088 -2.6361 8.2817 20 6 14.4406 -3.1068 7.7834 21 7 14.8606 -3.0421 9.0269 22 14 15.6414 -3.5148 6.4119 23 1 16.2354 -2.2601 5.8845 24 1 16.7192 -4.3883 6.9414 25 1 14.9243 -4.2202 5.3196 26 16 2.5210 -1.4371 0.0077 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.8669 2.0895 -0.0007 31 1 4.3721 1.6351 0.0002 32 1 5.4136 -1.9379 -0.5135 33 1 6.0389 -0.2713 -0.5134 34 1 7.6874 -1.8398 0.9301 35 1 7.5269 -0.8285 3.5622 36 1 6.9023 -2.4953 3.5627 37 1 9.0147 -3.2881 2.5350 38 1 9.6399 -1.6215 2.5344 39 1 8.8051 -4.4927 4.5874 40 1 9.0394 -3.6542 6.1397 41 1 7.6232 -3.2770 5.1291 42 1 11.0711 -3.7830 4.0848 43 1 11.4218 -2.0504 3.8765 44 1 13.2887 -3.1503 5.4792 45 1 15.7942 -3.2060 9.2326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317471586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:44 Heat of formation + Delta-G solvation = -28.283987 kcal Electronic energy + Delta-G solvation = -25411.789080 eV Core-core repulsion = 21556.405680 eV Total energy + Delta-G solvation = -3855.383400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.04617 -38.85008 -38.14877 -36.91422 -34.72327 -33.87344 -33.42650 -31.69080 -30.68580 -29.23892 -27.84133 -25.82947 -25.03063 -23.69171 -23.02964 -21.29969 -20.80027 -19.37161 -19.13487 -18.28430 -17.42238 -17.26507 -16.35355 -16.11078 -15.86015 -15.50838 -15.18373 -14.94956 -14.64249 -14.37040 -14.13005 -13.80946 -13.66779 -13.59053 -13.36658 -13.08816 -12.99246 -12.91708 -12.45083 -12.25890 -12.14016 -12.07613 -11.89073 -11.74507 -11.54734 -11.39131 -11.13512 -11.05679 -10.99905 -10.61303 -10.16379 -9.98456 -9.55246 -9.26538 -8.74830 -8.68750 -8.61629 -8.19390 -8.02999 -6.31793 -3.83273 0.67257 1.31583 1.70575 2.39989 2.41860 2.91799 3.00628 3.05394 3.13811 3.71954 3.99579 4.09325 4.22836 4.53025 4.56793 4.70290 4.72094 4.83057 4.89076 4.96832 5.00273 5.12387 5.19659 5.23919 5.30327 5.35885 5.46505 5.53930 5.58017 5.75120 5.79747 5.80343 5.86844 5.90037 5.95104 5.98091 6.17651 6.23970 6.48881 7.06150 7.19916 7.23606 7.57390 7.98248 8.13842 8.59304 8.94600 9.41470 9.82334 10.81342 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037777 B = 0.001515 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.023252 B =18480.913481 C =18713.361751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.180 4.180 3 C -0.139 4.139 4 C -0.121 4.121 5 C -0.164 4.164 6 C -0.069 4.069 7 C 0.511 3.489 8 O -0.523 6.523 9 N -0.730 5.730 10 C 0.122 3.878 11 C 0.045 3.955 12 N -0.515 5.515 13 C 0.017 3.983 14 C 0.045 3.955 15 C 0.452 3.548 16 O -0.557 6.557 17 N -0.591 5.591 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 S 0.107 5.893 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.399 0.601 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.016 0.984 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.017 2.862 -26.839 34.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.297 4.297 3 C -0.170 4.170 4 C -0.151 4.151 5 C -0.281 4.281 6 C -0.111 4.111 7 C 0.295 3.705 8 O -0.398 6.398 9 N -0.383 5.383 10 C -0.002 4.002 11 C -0.084 4.084 12 N -0.239 5.239 13 C -0.131 4.131 14 C -0.087 4.087 15 C 0.238 3.762 16 O -0.439 6.439 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.138 0.862 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 S 0.371 5.629 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.233 0.767 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.097 0.903 39 H 0.035 0.965 40 H 0.117 0.883 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.277 2.108 -25.102 33.628 hybrid contribution 2.030 0.304 -1.738 2.689 sum -20.248 2.411 -26.840 33.707 Atomic orbital electron populations 1.20338 0.87870 1.03263 1.02632 1.24474 0.99932 0.95733 1.09573 1.20021 0.92819 0.99222 1.04889 1.20012 0.96348 0.95721 1.03035 1.23679 0.97098 0.96639 1.10710 1.20140 0.92051 1.03710 0.95204 1.20456 0.81534 0.77293 0.91176 1.90769 1.54252 1.48745 1.46025 1.45923 1.15442 1.67669 1.09309 1.21339 0.94413 1.02639 0.81811 1.22253 0.95514 0.99866 0.90760 1.61432 1.02770 1.46759 1.12982 1.22648 0.98199 0.90492 1.01741 1.21901 0.88926 1.00412 0.97459 1.19605 0.82906 0.84106 0.89625 1.90539 1.53962 1.51503 1.47896 1.42202 1.07923 1.63961 1.08953 1.19434 0.94997 1.45376 0.83543 0.86244 1.25035 0.96932 0.97710 0.96453 1.69623 1.16648 1.48545 1.17291 0.86671 0.81766 0.79109 0.81814 1.19610 1.20201 1.19581 1.84158 0.96294 1.09355 1.73052 0.90785 0.90495 0.91306 0.84429 0.84492 0.87846 0.86917 0.76720 0.90177 0.91126 0.94524 0.90260 0.96530 0.88300 0.91663 0.93236 0.89184 0.79747 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.38 36.01 0.37 -0.11 16 2 C -0.18 -1.54 6.51 -36.00 -0.23 -1.77 16 3 C -0.14 -1.21 10.05 -41.21 -0.41 -1.62 16 4 C -0.12 -1.10 10.05 -41.21 -0.41 -1.51 16 5 C -0.16 -1.50 5.00 -36.00 -0.18 -1.68 16 6 C -0.07 -0.47 6.19 -29.04 -0.18 -0.65 16 7 C 0.51 5.29 7.82 -10.99 -0.09 5.20 16 8 O -0.52 -7.96 16.03 5.55 0.09 -7.87 16 9 N -0.73 -6.21 5.56 -60.30 -0.33 -6.55 16 10 C 0.12 1.37 5.60 -4.04 -0.02 1.35 16 11 C 0.04 0.49 5.07 -3.82 -0.02 0.47 16 12 N -0.52 -7.96 4.50 -244.36 -1.10 -9.06 16 13 C 0.02 0.26 8.96 60.06 0.54 0.80 16 14 C 0.04 0.72 5.45 -4.98 -0.03 0.69 16 15 C 0.45 10.11 7.47 -10.99 -0.08 10.02 16 16 O -0.56 -14.75 13.91 5.55 0.08 -14.67 16 17 N -0.59 -13.87 5.09 -10.96 -0.06 -13.93 16 18 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 19 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 21 N -0.88 -25.64 13.96 55.50 0.77 -24.86 16 22 Si 0.88 19.13 27.74 -169.99 -4.71 14.41 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 26 S 0.11 0.98 23.31 -107.50 -2.51 -1.53 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.10 0.49 8.14 -51.92 -0.42 0.06 16 33 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.40 2.00 8.47 -40.82 -0.35 1.66 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 0.89 6.55 -51.93 -0.34 0.55 16 37 H 0.04 0.35 8.12 -51.93 -0.42 -0.08 16 38 H 0.08 0.75 7.93 -51.93 -0.41 0.33 16 39 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.10 1.91 5.82 -51.93 -0.30 1.60 16 41 H 0.06 0.93 6.47 -51.93 -0.34 0.59 16 42 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 43 H 0.09 1.24 7.93 -51.92 -0.41 0.83 16 44 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 389.04 15.07 5.86 5.86 Total: -1.00 -36.07 389.04 -9.49 -45.56 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.59 Total: 9.12 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -1.00 Total: 3.52 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.72 Total: -54.40 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.17 Total: -22.55 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.41 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.07 -9.49 -45.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317471586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.280 kcal (2) G-P(sol) polarization free energy of solvation -36.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds