Wall clock time and date at job start Tue Mar 31 2020 23:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20233 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47167 * 89.99892 * 6 5 4 8 8 O 1.21283 * 120.00356 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00007 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00315 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47227 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47099 * 179.97438 * 11 10 9 13 13 C 1.46899 * 110.99846 * 66.04763 * 12 11 10 14 14 C 1.46899 * 111.00191 * 190.00302 * 12 11 10 15 15 C 1.50699 * 109.47414 * 169.99769 * 14 12 11 16 16 O 1.21293 * 119.99535 * 0.02562 * 15 14 12 17 17 N 1.34774 * 120.00083 * 179.97438 * 15 14 12 18 18 C 1.37098 * 119.99940 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00080 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00007 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99807 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99950 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47178 * 89.99763 * 22 20 18 24 24 H 1.48497 * 109.47014 * 210.00030 * 22 20 18 25 25 H 1.48496 * 109.47191 * 329.99947 * 22 20 18 26 26 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 27 27 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 30 30 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 31 31 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 32 32 H 1.09010 * 109.46884 * 209.99886 * 6 5 4 33 33 H 1.09002 * 109.47203 * 329.99303 * 6 5 4 34 34 H 0.97005 * 119.99811 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.47012 * 299.99838 * 10 9 7 36 36 H 1.09004 * 109.47200 * 60.00185 * 10 9 7 37 37 H 1.08997 * 109.47320 * 300.00051 * 11 10 9 38 38 H 1.09001 * 109.46765 * 60.00680 * 11 10 9 39 39 H 1.09004 * 109.47180 * 60.00430 * 13 12 11 40 40 H 1.09005 * 109.46603 * 179.97438 * 13 12 11 41 41 H 1.08999 * 109.47484 * 299.99847 * 13 12 11 42 42 H 1.09001 * 109.47062 * 290.00420 * 14 12 11 43 43 H 1.09008 * 109.47298 * 49.99894 * 14 12 11 44 44 H 0.97000 * 120.00205 * 0.02562 * 17 15 14 45 45 H 0.96999 * 119.99735 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3861 -0.9770 0.0005 7 6 5.8564 -1.1535 1.4212 8 8 5.1187 -0.8763 2.3431 9 7 7.0973 -1.6184 1.6674 10 6 7.5547 -1.7895 3.0486 11 6 8.9872 -2.3270 3.0485 12 7 9.4461 -2.4980 4.4335 13 6 8.6789 -3.5481 5.1165 14 6 10.8863 -2.7839 4.4794 15 6 11.3680 -2.7098 5.9054 16 8 10.5881 -2.4453 6.7959 17 7 12.6651 -2.9384 6.1913 18 6 13.1032 -2.8716 7.4887 19 1 12.4088 -2.6361 8.2817 20 6 14.4406 -3.1068 7.7834 21 7 14.8606 -3.0421 9.0269 22 14 15.6414 -3.5148 6.4119 23 1 16.2354 -2.2601 5.8845 24 1 16.7192 -4.3883 6.9414 25 1 14.9243 -4.2202 5.3196 26 16 2.5210 -1.4371 0.0077 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.8669 2.0895 -0.0007 31 1 4.3721 1.6351 0.0002 32 1 5.4136 -1.9379 -0.5135 33 1 6.0389 -0.2713 -0.5134 34 1 7.6874 -1.8398 0.9301 35 1 7.5269 -0.8285 3.5622 36 1 6.9023 -2.4953 3.5627 37 1 9.0147 -3.2881 2.5350 38 1 9.6399 -1.6215 2.5344 39 1 8.8051 -4.4927 4.5874 40 1 9.0394 -3.6542 6.1397 41 1 7.6232 -3.2770 5.1291 42 1 11.0711 -3.7830 4.0848 43 1 11.4218 -2.0504 3.8765 44 1 13.2887 -3.1503 5.4792 45 1 15.7942 -3.2060 9.2326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317471586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:43 Heat of formation + Delta-G solvation = -56.806336 kcal Electronic energy + Delta-G solvation = -25413.025902 eV Core-core repulsion = 21556.405680 eV Total energy + Delta-G solvation = -3856.620222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88890 -40.45140 -38.82049 -38.16981 -36.04040 -35.49182 -34.03118 -33.74102 -31.42395 -30.17946 -29.08400 -27.06905 -26.14263 -24.93731 -23.71305 -22.29940 -21.64607 -21.22508 -20.16409 -19.75294 -18.23115 -17.96222 -17.63236 -17.21699 -16.87455 -16.75619 -16.41365 -16.06975 -15.74349 -15.53444 -15.19743 -14.95118 -14.76658 -14.59772 -14.43216 -14.18920 -14.10721 -13.76758 -13.69236 -13.56092 -13.09330 -12.92701 -12.83017 -12.68773 -12.57510 -12.54642 -12.39388 -12.29035 -12.10191 -11.96114 -11.63972 -11.45747 -11.03863 -10.36883 -10.21851 -10.10535 -9.37796 -9.34712 -9.23987 -8.39571 -6.00598 0.03482 0.69844 1.07075 1.31239 1.37646 1.46323 1.63349 1.75896 1.98506 2.13475 2.25026 2.79468 3.16376 3.29751 3.63238 3.84118 3.99666 4.03612 4.09012 4.14323 4.26056 4.36053 4.40357 4.44727 4.48098 4.55232 4.62294 4.63241 4.70833 4.73026 4.80430 4.88868 4.97101 5.08991 5.20768 5.26676 5.35912 5.38814 5.54698 5.63813 5.88373 5.99806 6.15572 6.56454 6.61988 6.90837 7.27814 7.42177 8.00597 8.78296 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037777 B = 0.001515 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.023252 B =18480.913481 C =18713.361751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.186 4.186 3 C -0.154 4.154 4 C -0.134 4.134 5 C -0.176 4.176 6 C -0.062 4.062 7 C 0.508 3.492 8 O -0.580 6.580 9 N -0.712 5.712 10 C 0.129 3.871 11 C 0.054 3.946 12 N -0.544 5.544 13 C 0.024 3.976 14 C 0.058 3.942 15 C 0.448 3.552 16 O -0.608 6.608 17 N -0.591 5.591 18 C -0.328 4.328 19 H 0.052 0.948 20 C -0.016 4.016 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.257 1.257 24 H -0.277 1.277 25 H -0.228 1.228 26 S 0.079 5.921 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.130 0.870 33 H 0.146 0.854 34 H 0.421 0.579 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.040 0.960 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.127 0.873 44 H 0.390 0.610 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.851 2.311 -31.903 37.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.304 4.304 3 C -0.184 4.184 4 C -0.164 4.164 5 C -0.293 4.293 6 C -0.103 4.103 7 C 0.295 3.705 8 O -0.459 6.459 9 N -0.366 5.366 10 C 0.004 3.996 11 C -0.073 4.073 12 N -0.269 5.269 13 C -0.124 4.124 14 C -0.073 4.073 15 C 0.236 3.764 16 O -0.492 6.492 17 N -0.233 5.233 18 C -0.458 4.458 19 H 0.071 0.929 20 C -0.215 4.215 21 N -0.578 5.578 22 Si 0.787 3.213 23 H -0.181 1.181 24 H -0.202 1.202 25 H -0.152 1.152 26 S 0.343 5.657 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.171 0.829 31 H 0.167 0.833 32 H 0.148 0.852 33 H 0.163 0.837 34 H 0.258 0.742 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.145 0.855 44 H 0.226 0.774 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.106 1.547 -30.237 36.907 hybrid contribution 1.510 0.541 -0.062 1.605 sum -19.596 2.088 -30.299 36.144 Atomic orbital electron populations 1.20434 0.86224 1.03779 1.03725 1.24845 1.01169 0.95219 1.09117 1.20312 0.92978 1.00082 1.05012 1.20306 0.96928 0.96224 1.02978 1.24007 0.97948 0.96638 1.10716 1.20246 0.91136 1.05947 0.92986 1.21110 0.81294 0.76048 0.92076 1.90753 1.55867 1.51286 1.48000 1.45705 1.15314 1.66715 1.08874 1.21071 0.94890 1.00671 0.82988 1.22256 0.94926 1.01894 0.88258 1.61293 1.02516 1.46998 1.16130 1.22457 0.98340 0.91983 0.99645 1.21835 0.89455 1.03538 0.92479 1.20988 0.81912 0.81245 0.92235 1.90534 1.55270 1.52877 1.50554 1.42013 1.08970 1.64822 1.07540 1.18994 0.94813 1.47405 0.84562 0.92941 1.26145 0.98824 0.96516 0.99986 1.69817 1.17593 1.49700 1.20643 0.85337 0.78035 0.79612 0.78333 1.18106 1.20230 1.15156 1.84174 0.97417 1.10520 1.73551 0.89340 0.89518 0.91207 0.82894 0.83344 0.85193 0.83655 0.74153 0.93057 0.92961 0.91641 0.87757 0.94184 0.92891 0.91230 0.89831 0.85526 0.77412 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.38 71.24 0.74 -0.15 16 2 C -0.19 -3.07 6.51 24.59 0.16 -2.91 16 3 C -0.15 -2.55 10.05 21.22 0.21 -2.33 16 4 C -0.13 -2.30 10.05 21.22 0.21 -2.09 16 5 C -0.18 -3.00 5.00 24.59 0.12 -2.88 16 6 C -0.06 -0.68 6.19 29.10 0.18 -0.50 16 7 C 0.51 9.66 7.82 87.65 0.69 10.34 16 8 O -0.58 -17.73 16.03 -3.04 -0.05 -17.78 16 9 N -0.71 -10.09 5.56 -463.07 -2.57 -12.67 16 10 C 0.13 2.68 5.60 86.38 0.48 3.16 16 11 C 0.05 0.96 5.07 86.30 0.44 1.40 16 12 N -0.54 -15.59 4.50 -927.03 -4.17 -19.76 16 13 C 0.02 0.73 8.96 127.69 1.14 1.87 16 14 C 0.06 1.65 5.45 85.56 0.47 2.12 16 15 C 0.45 19.92 7.47 87.66 0.66 20.58 16 16 O -0.61 -33.75 13.91 -3.07 -0.04 -33.80 16 17 N -0.59 -27.41 5.09 -306.98 -1.56 -28.97 16 18 C -0.33 -19.22 10.16 84.04 0.85 -18.36 16 19 H 0.05 3.69 7.39 -2.91 -0.02 3.66 16 20 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 21 N -0.94 -56.63 13.96 21.66 0.30 -56.32 16 22 Si 0.97 38.10 27.74 68.60 1.90 40.00 16 23 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 24 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 25 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 26 S 0.08 1.41 23.31 -56.49 -1.32 0.10 16 27 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 31 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.13 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.15 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.42 2.32 8.47 -92.70 -0.79 1.53 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 1.29 6.55 -2.39 -0.02 1.28 16 37 H 0.07 0.85 8.12 -2.39 -0.02 0.84 16 38 H 0.10 1.38 7.93 -2.39 -0.02 1.36 16 39 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.05 2.12 5.82 -2.38 -0.01 2.10 16 41 H 0.07 2.01 6.47 -2.39 -0.02 1.99 16 42 H 0.08 1.90 8.12 -2.39 -0.02 1.88 16 43 H 0.13 2.77 7.93 -2.38 -0.02 2.75 16 44 H 0.39 14.67 5.76 -92.71 -0.53 14.13 16 45 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -88.33 389.04 -1.04 -89.37 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -0.35 Total: 30.02 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 6.82 Total: 9.81 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -8.00 Total: -117.72 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -0.09 Total: -51.58 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.90 Total: 40.00 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -1.32 Total: 0.10 kcal Total: -88.33 -1.04 -89.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317471586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.568 kcal (2) G-P(sol) polarization free energy of solvation -88.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds