Wall clock time and date at job start Tue Mar 31 2020 22:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99812 * 2 1 4 4 H 1.48498 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47158 * 300.00160 * 3 2 1 6 6 H 1.48496 * 109.47300 * 60.00059 * 3 2 1 7 7 C 1.38807 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00191 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00390 * 359.97438 * 7 2 1 10 10 C 1.46491 * 120.00588 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47485 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47070 * 295.00165 * 11 10 9 13 13 N 1.46499 * 109.46799 * 55.00265 * 11 10 9 14 14 C 1.34781 * 119.99874 * 205.00309 * 13 11 10 15 15 O 1.21649 * 119.99857 * 359.97438 * 14 13 11 16 16 C 1.47180 * 119.99894 * 180.02562 * 14 13 11 17 17 C 1.35101 * 122.48554 * 179.73380 * 16 14 13 18 18 S 1.76185 * 108.21595 * 179.91008 * 17 16 14 19 19 C 1.76050 * 90.15965 * 0.28895 * 18 17 16 20 20 O 1.35503 * 125.17893 * 179.86190 * 19 18 17 21 21 N 1.29249 * 109.64271 * 359.83396 * 19 18 17 22 22 C 1.53000 * 109.47233 * 174.99791 * 11 10 9 23 23 C 1.52996 * 109.47328 * 300.00469 * 22 11 10 24 24 C 1.52997 * 109.46975 * 180.02562 * 23 22 11 25 25 C 1.53002 * 109.47415 * 59.99636 * 24 23 22 26 26 C 1.52996 * 109.47346 * 300.00136 * 25 24 23 27 27 C 1.52997 * 109.46975 * 59.99594 * 26 25 24 28 28 H 0.97004 * 120.00468 * 359.97438 * 1 2 3 29 29 H 0.97008 * 119.99638 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47215 * 59.99843 * 10 9 7 31 31 H 1.09000 * 109.47131 * 299.99898 * 10 9 7 32 32 H 0.97002 * 120.00410 * 24.99527 * 13 11 10 33 33 H 1.08001 * 125.88796 * 0.02562 * 17 16 14 34 34 H 0.96696 * 114.00088 * 269.96325 * 20 19 18 35 35 H 1.09004 * 109.46724 * 60.00652 * 22 11 10 36 36 H 1.09000 * 109.46870 * 299.99783 * 23 22 11 37 37 H 1.08992 * 109.47554 * 59.99639 * 23 22 11 38 38 H 1.09000 * 109.47140 * 299.99612 * 24 23 22 39 39 H 1.09002 * 109.47045 * 179.97438 * 24 23 22 40 40 H 1.08996 * 109.47407 * 179.97438 * 25 24 23 41 41 H 1.09004 * 109.46733 * 60.00336 * 25 24 23 42 42 H 1.09000 * 109.46870 * 299.99817 * 26 25 24 43 43 H 1.09001 * 109.47367 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.47497 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.47140 * 60.00388 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.4988 -4.8138 0.9313 13 7 0.1433 -4.6758 -1.1312 14 6 -1.0812 -5.2367 -1.0785 15 8 -1.4216 -5.8628 -0.0926 16 6 -2.0060 -5.0926 -2.2144 17 6 -3.2420 -5.6380 -2.2174 18 16 -4.0186 -5.2338 -3.7463 19 6 -2.5773 -4.3590 -4.2528 20 8 -2.4279 -3.7207 -5.4388 21 7 -1.6835 -4.4177 -3.3210 22 6 1.8247 -6.1411 -0.1277 23 6 2.6180 -6.1492 -1.4359 24 6 3.3782 -7.4709 -1.5631 25 6 2.3836 -8.6335 -1.5625 26 6 1.5903 -8.6253 -0.2543 27 6 0.8301 -7.3037 -0.1271 28 1 -0.4851 0.8400 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6855 -3.7148 0.8878 31 1 2.6841 -3.7140 -0.8922 32 1 0.4147 -4.1768 -1.9174 33 1 -3.6793 -6.2197 -1.4194 34 1 -2.0604 -4.2754 -6.1404 35 1 2.5098 -6.2481 0.7134 36 1 1.9329 -6.0422 -2.2769 37 1 3.3263 -5.3208 -1.4366 38 1 4.0633 -7.5784 -0.7221 39 1 3.9431 -7.4769 -2.4953 40 1 2.9251 -9.5750 -1.6535 41 1 1.6986 -8.5260 -2.4035 42 1 2.2754 -8.7328 0.5867 43 1 0.8814 -9.4534 -0.2540 44 1 0.2652 -7.2976 0.8051 45 1 0.1450 -7.1962 -0.9681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319660474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:00 Heat of formation + Delta-G solvation = -30.216062 kcal Electronic energy + Delta-G solvation = -28198.681261 eV Core-core repulsion = 24343.214080 eV Total energy + Delta-G solvation = -3855.467181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.58834 -39.46489 -38.07712 -37.06310 -35.65824 -33.56012 -31.47343 -30.68604 -30.44305 -30.01988 -27.23019 -25.42762 -23.85724 -22.73370 -22.59964 -21.68401 -20.25450 -19.87776 -19.46310 -19.21668 -17.99100 -17.15067 -16.42661 -16.06381 -15.69525 -15.49188 -14.68120 -14.58781 -14.47753 -14.12048 -14.00759 -13.93669 -13.54248 -13.23598 -13.10611 -12.91298 -12.40166 -12.25546 -12.09246 -11.97307 -11.86558 -11.60947 -11.03596 -10.95024 -10.92835 -10.79274 -10.74092 -10.35925 -10.17187 -10.07484 -9.94905 -9.74393 -9.73109 -9.69168 -9.63385 -9.00457 -8.86103 -8.52778 -6.90549 -5.73328 -3.03002 0.29227 0.79826 1.31266 1.90789 3.23518 3.44967 3.47864 3.50392 3.52930 3.65335 4.58395 4.63740 4.79987 4.85238 4.88357 5.06037 5.14610 5.27914 5.33875 5.47048 5.53740 5.59379 5.64799 5.65939 5.68062 5.76863 5.86693 5.97463 6.03226 6.11832 6.18281 6.21312 6.33302 6.36172 6.47505 6.51536 6.56422 6.66736 6.75136 6.86819 6.96018 7.25746 7.72228 7.91111 8.43852 8.48623 9.55897 10.12413 10.47298 11.48974 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007021 B = 0.004872 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3987.161824 B = 5746.109366 C = 8606.709062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.143 3.857 11 C 0.141 3.859 12 H 0.089 0.911 13 N -0.684 5.684 14 C 0.592 3.408 15 O -0.537 6.537 16 C 0.034 3.966 17 C -0.169 4.169 18 S 0.088 5.912 19 C 0.259 3.741 20 O -0.428 6.428 21 N -0.451 5.451 22 C -0.093 4.093 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.105 4.105 28 H 0.254 0.746 29 H 0.386 0.614 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.413 0.587 33 H 0.194 0.806 34 H 0.406 0.594 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.190 -18.677 -9.409 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.015 3.985 11 C 0.036 3.964 12 H 0.107 0.893 13 N -0.334 5.334 14 C 0.374 3.626 15 O -0.415 6.415 16 C -0.098 4.098 17 C -0.310 4.310 18 S 0.335 5.665 19 C -0.061 4.061 20 O -0.234 6.234 21 N -0.177 5.177 22 C -0.113 4.113 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.157 4.157 27 C -0.143 4.143 28 H 0.064 0.936 29 H 0.220 0.780 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.250 0.750 33 H 0.212 0.788 34 H 0.264 0.736 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.947 -18.402 -9.024 20.872 hybrid contribution 0.903 0.966 -0.120 1.328 sum -3.044 -17.436 -9.144 19.923 Atomic orbital electron populations 1.69683 1.05108 1.25483 1.57473 1.24742 0.95465 0.97669 1.02905 0.86137 0.78762 0.84239 0.77142 1.20565 1.21915 1.21920 1.19234 0.90993 0.84061 1.42919 0.91126 1.42350 1.05994 0.99721 1.89468 1.21033 0.93172 0.85277 0.99012 1.21392 0.90631 0.94567 0.89771 0.89292 1.45771 1.13615 1.52983 1.20997 1.16924 0.81363 0.79521 0.84753 1.90808 1.76454 1.42346 1.31862 1.20122 0.95173 1.00406 0.94119 1.27095 0.96604 1.05453 1.01827 1.85214 1.21475 1.48070 1.11742 1.24990 0.91377 0.98159 0.91598 1.84915 1.83845 1.38170 1.16518 1.66756 1.32574 1.16944 1.01378 1.21526 0.97052 0.94327 0.98357 1.21640 0.98994 0.97131 0.97634 1.21518 0.97681 0.94971 1.01277 1.21523 0.98068 0.97903 0.98025 1.21567 0.98779 0.97974 0.97384 1.21622 0.97014 0.92837 1.02781 0.93600 0.78019 0.94932 0.95287 0.75040 0.78849 0.73562 0.90398 0.92074 0.91186 0.92171 0.92488 0.92746 0.92493 0.92341 0.92644 0.91263 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.43 5.43 -59.92 -0.33 -18.76 16 10 C 0.14 2.80 5.60 -4.05 -0.02 2.78 16 11 C 0.14 2.38 2.16 -67.93 -0.15 2.23 16 12 H 0.09 1.68 7.58 -51.93 -0.39 1.28 16 13 N -0.68 -11.61 3.63 -54.95 -0.20 -11.80 16 14 C 0.59 10.05 6.14 -12.63 -0.08 9.98 16 15 O -0.54 -9.77 13.78 5.23 0.07 -9.70 16 16 C 0.03 0.51 6.67 -84.60 -0.56 -0.05 16 17 C -0.17 -2.08 10.84 29.62 0.32 -1.76 16 18 S 0.09 0.88 23.42 -107.50 -2.52 -1.64 16 19 C 0.26 3.22 8.88 51.68 0.46 3.67 16 20 O -0.43 -4.37 13.64 -18.20 -0.25 -4.62 16 21 N -0.45 -6.84 10.01 -11.34 -0.11 -6.96 16 22 C -0.09 -1.27 2.07 -90.62 -0.19 -1.46 16 23 C -0.12 -1.47 4.70 -26.73 -0.13 -1.60 16 24 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 25 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 26 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 27 C -0.11 -1.42 3.72 -26.73 -0.10 -1.52 16 28 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.39 10.53 7.33 -40.82 -0.30 10.23 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.03 0.56 6.18 -51.93 -0.32 0.24 16 32 H 0.41 7.33 8.08 -40.82 -0.33 7.00 16 33 H 0.19 2.06 8.01 -52.49 -0.42 1.64 16 34 H 0.41 1.72 9.06 45.56 0.41 2.13 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.82 7.60 -51.93 -0.39 0.42 16 37 H 0.07 0.93 6.32 -51.93 -0.33 0.60 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.03 7.53 -51.93 -0.39 0.64 16 45 H 0.06 0.89 5.77 -51.93 -0.30 0.59 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -33.55 372.63 -8.87 -42.42 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -5.69 Total: 15.07 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.17 Total: 0.64 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: 0.09 Total: -65.46 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.18 Total: -14.32 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.52 Total: -1.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.55 -8.87 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319660474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.208 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds