Wall clock time and date at job start Tue Mar 31 2020 22:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99812 * 2 1 4 4 H 1.48498 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47158 * 300.00160 * 3 2 1 6 6 H 1.48496 * 109.47300 * 60.00059 * 3 2 1 7 7 C 1.38807 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00191 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00390 * 359.97438 * 7 2 1 10 10 C 1.46491 * 120.00588 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47485 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47070 * 295.00165 * 11 10 9 13 13 N 1.46499 * 109.46799 * 55.00265 * 11 10 9 14 14 C 1.34781 * 119.99874 * 205.00309 * 13 11 10 15 15 O 1.21649 * 119.99857 * 359.97438 * 14 13 11 16 16 C 1.47180 * 119.99894 * 180.02562 * 14 13 11 17 17 C 1.35101 * 122.48554 * 179.73380 * 16 14 13 18 18 S 1.76185 * 108.21595 * 179.91008 * 17 16 14 19 19 C 1.76050 * 90.15965 * 0.28895 * 18 17 16 20 20 O 1.35503 * 125.17893 * 179.86190 * 19 18 17 21 21 N 1.29249 * 109.64271 * 359.83396 * 19 18 17 22 22 C 1.53000 * 109.47233 * 174.99791 * 11 10 9 23 23 C 1.52996 * 109.47328 * 300.00469 * 22 11 10 24 24 C 1.52997 * 109.46975 * 180.02562 * 23 22 11 25 25 C 1.53002 * 109.47415 * 59.99636 * 24 23 22 26 26 C 1.52996 * 109.47346 * 300.00136 * 25 24 23 27 27 C 1.52997 * 109.46975 * 59.99594 * 26 25 24 28 28 H 0.97004 * 120.00468 * 359.97438 * 1 2 3 29 29 H 0.97008 * 119.99638 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47215 * 59.99843 * 10 9 7 31 31 H 1.09000 * 109.47131 * 299.99898 * 10 9 7 32 32 H 0.97002 * 120.00410 * 24.99527 * 13 11 10 33 33 H 1.08001 * 125.88796 * 0.02562 * 17 16 14 34 34 H 0.96696 * 114.00088 * 269.96325 * 20 19 18 35 35 H 1.09004 * 109.46724 * 60.00652 * 22 11 10 36 36 H 1.09000 * 109.46870 * 299.99783 * 23 22 11 37 37 H 1.08992 * 109.47554 * 59.99639 * 23 22 11 38 38 H 1.09000 * 109.47140 * 299.99612 * 24 23 22 39 39 H 1.09002 * 109.47045 * 179.97438 * 24 23 22 40 40 H 1.08996 * 109.47407 * 179.97438 * 25 24 23 41 41 H 1.09004 * 109.46733 * 60.00336 * 25 24 23 42 42 H 1.09000 * 109.46870 * 299.99817 * 26 25 24 43 43 H 1.09001 * 109.47367 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.47497 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.47140 * 60.00388 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.4988 -4.8138 0.9313 13 7 0.1433 -4.6758 -1.1312 14 6 -1.0812 -5.2367 -1.0785 15 8 -1.4216 -5.8628 -0.0926 16 6 -2.0060 -5.0926 -2.2144 17 6 -3.2420 -5.6380 -2.2174 18 16 -4.0186 -5.2338 -3.7463 19 6 -2.5773 -4.3590 -4.2528 20 8 -2.4279 -3.7207 -5.4388 21 7 -1.6835 -4.4177 -3.3210 22 6 1.8247 -6.1411 -0.1277 23 6 2.6180 -6.1492 -1.4359 24 6 3.3782 -7.4709 -1.5631 25 6 2.3836 -8.6335 -1.5625 26 6 1.5903 -8.6253 -0.2543 27 6 0.8301 -7.3037 -0.1271 28 1 -0.4851 0.8400 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6855 -3.7148 0.8878 31 1 2.6841 -3.7140 -0.8922 32 1 0.4147 -4.1768 -1.9174 33 1 -3.6793 -6.2197 -1.4194 34 1 -2.0604 -4.2754 -6.1404 35 1 2.5098 -6.2481 0.7134 36 1 1.9329 -6.0422 -2.2769 37 1 3.3263 -5.3208 -1.4366 38 1 4.0633 -7.5784 -0.7221 39 1 3.9431 -7.4769 -2.4953 40 1 2.9251 -9.5750 -1.6535 41 1 1.6986 -8.5260 -2.4035 42 1 2.2754 -8.7328 0.5867 43 1 0.8814 -9.4534 -0.2540 44 1 0.2652 -7.2976 0.8051 45 1 0.1450 -7.1962 -0.9681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319660474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:59 Heat of formation + Delta-G solvation = -56.632846 kcal Electronic energy + Delta-G solvation = -28199.826779 eV Core-core repulsion = 24343.214080 eV Total energy + Delta-G solvation = -3856.612699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.77146 -40.52302 -39.12535 -38.02363 -37.16665 -35.33075 -33.08004 -32.08886 -31.58391 -31.03430 -28.74686 -26.64777 -25.50718 -24.02829 -23.67804 -22.96734 -21.45536 -20.98685 -20.44128 -20.32868 -19.24547 -18.93883 -17.59274 -17.14230 -16.87905 -16.83841 -16.35748 -15.80687 -15.59644 -15.31542 -15.16872 -15.12734 -14.84928 -14.79489 -14.53953 -14.00304 -13.88602 -13.47104 -13.22475 -13.10041 -12.90443 -12.84896 -12.82545 -12.59988 -12.22893 -12.03641 -11.98426 -11.92350 -11.76728 -11.37194 -11.29046 -11.06677 -10.98811 -10.77070 -10.70556 -10.67310 -10.02781 -9.77229 -9.00163 -7.94150 -5.23784 -0.65950 -0.09276 0.34917 0.81658 1.46618 1.47563 1.57663 2.17613 2.29703 2.50434 2.56129 3.40287 3.57940 3.67209 3.79250 3.88544 4.07120 4.13251 4.16152 4.18447 4.28380 4.48664 4.50770 4.57904 4.65953 4.68071 4.70642 4.75646 4.82424 4.90313 5.05595 5.15525 5.24819 5.27161 5.33613 5.35284 5.42035 5.50512 5.51719 5.59748 5.66365 6.15362 6.25972 6.37500 6.60149 7.16103 7.32973 8.07101 8.30435 9.29301 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007021 B = 0.004872 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3987.161824 B = 5746.109366 C = 8606.709062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.145 3.855 11 C 0.150 3.850 12 H 0.063 0.937 13 N -0.685 5.685 14 C 0.588 3.412 15 O -0.558 6.558 16 C 0.003 3.997 17 C -0.171 4.171 18 S 0.175 5.825 19 C 0.249 3.751 20 O -0.437 6.437 21 N -0.489 5.489 22 C -0.084 4.084 23 C -0.112 4.112 24 C -0.113 4.113 25 C -0.114 4.114 26 C -0.115 4.115 27 C -0.097 4.097 28 H 0.249 0.751 29 H 0.372 0.628 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.409 0.591 33 H 0.207 0.793 34 H 0.430 0.570 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.050 0.950 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 -19.986 -10.625 22.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.018 3.982 11 C 0.045 3.955 12 H 0.082 0.918 13 N -0.334 5.334 14 C 0.372 3.628 15 O -0.438 6.438 16 C -0.128 4.128 17 C -0.312 4.312 18 S 0.423 5.577 19 C -0.071 4.071 20 O -0.247 6.247 21 N -0.216 5.216 22 C -0.104 4.104 23 C -0.149 4.149 24 C -0.150 4.150 25 C -0.152 4.152 26 C -0.153 4.153 27 C -0.135 4.135 28 H 0.057 0.943 29 H 0.204 0.796 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.244 0.756 33 H 0.224 0.776 34 H 0.293 0.707 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.211 -19.758 -10.273 22.500 hybrid contribution 0.606 1.308 0.190 1.454 sum -2.605 -18.450 -10.084 21.187 Atomic orbital electron populations 1.69858 1.06790 1.25793 1.59636 1.25572 0.96273 1.01165 1.03766 0.85070 0.78384 0.79817 0.76453 1.18679 1.22258 1.22308 1.19672 0.91578 0.85094 1.40895 0.90194 1.42538 1.05554 1.01054 1.89406 1.21179 0.93555 0.83994 0.99463 1.21235 0.90070 0.95272 0.88905 0.91833 1.45733 1.13956 1.53100 1.20565 1.17247 0.81399 0.78905 0.85237 1.90776 1.76830 1.43307 1.32871 1.19871 0.95990 1.02779 0.94180 1.27421 0.96045 1.04252 1.03524 1.84903 1.18374 1.45646 1.08731 1.25226 0.92250 0.97861 0.91772 1.84864 1.84183 1.39206 1.16467 1.66674 1.34597 1.18331 1.02042 1.21463 0.96959 0.92450 0.99529 1.21582 0.98598 0.98423 0.96341 1.21502 0.97638 0.93605 1.02292 1.21505 0.97872 0.98693 0.97119 1.21543 0.98932 0.96453 0.98365 1.21492 0.96725 0.94192 1.01068 0.94264 0.79639 0.94378 0.94010 0.75571 0.77637 0.70695 0.89437 0.93071 0.91741 0.91301 0.91306 0.90748 0.93106 0.91413 0.91980 0.93236 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.38 13.06 21.65 0.28 -61.09 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 3 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 7 C -0.24 -13.55 9.99 84.03 0.84 -12.71 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 9 N -0.74 -38.36 5.43 -343.47 -1.87 -40.23 16 10 C 0.14 5.74 5.60 86.38 0.48 6.22 16 11 C 0.15 5.24 2.16 44.99 0.10 5.34 16 12 H 0.06 2.54 7.58 -2.39 -0.02 2.52 16 13 N -0.68 -24.38 3.63 -446.01 -1.62 -26.00 16 14 C 0.59 20.95 6.14 86.59 0.53 21.48 16 15 O -0.56 -21.31 13.78 -4.19 -0.06 -21.37 16 16 C 0.00 0.10 6.67 40.51 0.27 0.38 16 17 C -0.17 -4.11 10.84 67.10 0.73 -3.39 16 18 S 0.18 3.17 23.42 -56.49 -1.32 1.84 16 19 C 0.25 5.97 8.88 130.62 1.16 7.13 16 20 O -0.44 -8.39 13.64 -88.04 -1.20 -9.59 16 21 N -0.49 -15.11 10.01 -304.23 -3.05 -18.15 16 22 C -0.08 -2.30 2.07 -10.79 -0.02 -2.33 16 23 C -0.11 -2.75 4.70 30.59 0.14 -2.60 16 24 C -0.11 -2.19 5.92 30.59 0.18 -2.00 16 25 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 26 C -0.12 -2.41 5.92 30.59 0.18 -2.23 16 27 C -0.10 -2.63 3.72 30.59 0.11 -2.52 16 28 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.37 21.13 7.33 -92.70 -0.68 20.45 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.59 6.18 -2.39 -0.01 1.57 16 32 H 0.41 15.25 8.08 -92.71 -0.75 14.50 16 33 H 0.21 4.26 8.01 -2.91 -0.02 4.24 16 34 H 0.43 2.97 9.06 -74.06 -0.67 2.30 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 1.36 7.60 -2.39 -0.02 1.34 16 37 H 0.06 1.64 6.32 -2.39 -0.02 1.63 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.05 1.52 7.53 -2.39 -0.02 1.51 16 45 H 0.04 1.35 5.77 -2.39 -0.01 1.34 16 Total: -1.00 -73.65 372.63 -2.50 -76.14 By element: Atomic # 1 Polarization: 43.58 SS G_CDS: -1.05 Total: 42.53 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 5.36 Total: 6.84 kcal Atomic # 7 Polarization: -139.22 SS G_CDS: -6.25 Total: -145.47 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -1.26 Total: -30.96 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.32 Total: 1.84 kcal Total: -73.65 -2.50 -76.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319660474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.512 kcal (2) G-P(sol) polarization free energy of solvation -73.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds