Wall clock time and date at job start Tue Mar 31 2020 22:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 119.99845 * 2 1 4 4 H 1.48503 * 109.46823 * 239.99565 * 3 2 1 5 5 H 1.48498 * 109.46839 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46903 * 120.00073 * 3 2 1 7 7 C 1.38811 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00454 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99776 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00271 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47309 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47430 * 64.99837 * 11 10 9 13 13 N 1.46499 * 109.46833 * 304.99485 * 11 10 9 14 14 C 1.34784 * 119.99893 * 155.00334 * 13 11 10 15 15 O 1.21646 * 119.99867 * 359.97438 * 14 13 11 16 16 C 1.47183 * 120.00013 * 179.72693 * 14 13 11 17 17 C 1.35085 * 122.48647 * 179.73769 * 16 14 13 18 18 S 1.76189 * 108.22022 * 179.87796 * 17 16 14 19 19 C 1.76060 * 90.15561 * 0.31705 * 18 17 16 20 20 O 1.35496 * 125.17753 * 179.81688 * 19 18 17 21 21 N 1.29245 * 109.64000 * 359.81269 * 19 18 17 22 22 C 1.52998 * 109.47053 * 185.00046 * 11 10 9 23 23 C 1.53000 * 109.47154 * 299.99761 * 22 11 10 24 24 C 1.52998 * 109.47154 * 179.97438 * 23 22 11 25 25 C 1.53001 * 109.47375 * 60.00110 * 24 23 22 26 26 C 1.52995 * 109.46592 * 299.99907 * 25 24 23 27 27 C 1.53000 * 109.47263 * 179.97438 * 22 11 10 28 28 H 0.96996 * 120.00455 * 359.97438 * 1 2 3 29 29 H 0.97006 * 120.00522 * 0.02562 * 9 7 2 30 30 H 1.08994 * 109.46694 * 59.99850 * 10 9 7 31 31 H 1.09004 * 109.46507 * 300.00546 * 10 9 7 32 32 H 0.97005 * 120.00261 * 335.00546 * 13 11 10 33 33 H 1.08001 * 125.88994 * 359.96194 * 17 16 14 34 34 H 0.96708 * 113.99761 * 269.99952 * 20 19 18 35 35 H 1.09007 * 109.47248 * 59.99543 * 22 11 10 36 36 H 1.09002 * 109.47232 * 300.00298 * 23 22 11 37 37 H 1.09006 * 109.46987 * 59.99927 * 23 22 11 38 38 H 1.09001 * 109.47552 * 299.99526 * 24 23 22 39 39 H 1.09007 * 109.46811 * 179.97438 * 24 23 22 40 40 H 1.08993 * 109.47257 * 179.97438 * 25 24 23 41 41 H 1.08996 * 109.46845 * 59.99431 * 25 24 23 42 42 H 1.09002 * 109.47498 * 299.99497 * 26 25 24 43 43 H 1.09005 * 109.47199 * 180.02562 * 26 25 24 44 44 H 1.08998 * 109.47431 * 299.99873 * 27 22 11 45 45 H 1.08997 * 109.46857 * 60.00387 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 1.0639 -4.8197 0.0022 12 1 0.4974 -4.8139 -0.9288 13 7 0.1450 -4.6758 1.1341 14 6 -1.0795 -5.2367 1.0834 15 8 -1.4218 -5.8621 0.0977 16 6 -2.0006 -5.0973 2.2230 17 6 -3.2402 -5.6341 2.2239 18 16 -4.0081 -5.2446 3.7610 19 6 -2.5654 -4.3707 4.2658 20 8 -2.4122 -3.7369 5.4535 21 7 -1.6747 -4.4259 3.3308 22 6 1.8248 -6.1411 0.1280 23 6 2.7846 -6.2914 -1.0540 24 6 3.5460 -7.6125 -0.9279 25 6 2.5522 -8.7758 -0.9269 26 6 1.5925 -8.6255 0.2551 27 6 0.8306 -7.3040 0.1293 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 0.0016 30 1 2.6855 -3.7141 0.8911 31 1 2.6842 -3.7148 -0.8889 32 1 0.4178 -4.1768 1.9200 33 1 -3.6836 -6.2048 1.4213 34 1 -2.6931 -2.8116 5.4447 35 1 2.3915 -6.1469 1.0592 36 1 2.2180 -6.2855 -1.9852 37 1 3.4930 -5.4628 -1.0545 38 1 4.1127 -7.6179 0.0031 39 1 4.2295 -7.7197 -1.7703 40 1 3.0946 -9.7170 -0.8375 41 1 1.9856 -8.7704 -1.8579 42 1 2.1591 -8.6309 1.1863 43 1 0.8847 -9.4545 0.2562 44 1 0.1471 -7.1968 0.9715 45 1 0.2638 -7.2984 -0.8017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319660485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:04 Heat of formation + Delta-G solvation = -32.869842 kcal Electronic energy + Delta-G solvation = -27916.362201 eV Core-core repulsion = 24060.779943 eV Total energy + Delta-G solvation = -3855.582258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.54176 -39.40534 -38.10937 -37.07616 -35.68230 -33.58295 -31.60851 -30.63266 -30.44651 -30.01674 -27.21412 -25.42977 -23.80667 -22.77838 -22.31566 -21.66685 -20.21645 -19.90776 -19.64892 -19.30399 -17.96845 -17.14836 -16.41568 -16.14830 -15.73095 -15.51197 -14.76654 -14.49963 -14.34208 -14.14354 -13.97684 -13.83508 -13.63992 -13.27766 -13.08821 -12.96226 -12.33097 -12.20543 -11.99322 -11.96708 -11.85358 -11.65770 -11.22700 -10.96460 -10.84724 -10.82466 -10.62469 -10.41273 -10.19491 -10.06346 -9.97456 -9.79343 -9.74059 -9.70351 -9.64518 -9.00542 -8.88685 -8.53329 -6.93359 -5.75951 -3.05378 0.28581 0.80809 1.31220 1.89999 3.22786 3.43748 3.48130 3.48985 3.52614 3.61416 4.56822 4.62354 4.80632 4.89218 4.89497 5.06229 5.15596 5.24443 5.39805 5.47235 5.55993 5.58658 5.64483 5.68339 5.68682 5.78097 5.82807 5.96071 6.03480 6.12124 6.19232 6.27174 6.33854 6.36249 6.46648 6.49725 6.56483 6.67979 6.73853 6.88118 6.96226 7.25568 7.69034 7.90382 8.41511 8.47670 9.53431 10.09887 10.45266 11.46305 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.006126 B = 0.005187 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4569.635397 B = 5397.091171 C = 9291.486928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.144 3.856 11 C 0.141 3.859 12 H 0.089 0.911 13 N -0.688 5.688 14 C 0.592 3.408 15 O -0.536 6.536 16 C 0.033 3.967 17 C -0.168 4.168 18 S 0.087 5.913 19 C 0.261 3.739 20 O -0.432 6.432 21 N -0.451 5.451 22 C -0.092 4.092 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.105 4.105 28 H 0.255 0.745 29 H 0.386 0.614 30 H 0.024 0.976 31 H 0.038 0.962 32 H 0.413 0.587 33 H 0.195 0.805 34 H 0.411 0.589 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.378 -15.848 6.466 17.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.016 3.984 11 C 0.037 3.963 12 H 0.107 0.893 13 N -0.337 5.337 14 C 0.375 3.625 15 O -0.414 6.414 16 C -0.098 4.098 17 C -0.309 4.309 18 S 0.334 5.666 19 C -0.060 4.060 20 O -0.240 6.240 21 N -0.177 5.177 22 C -0.112 4.112 23 C -0.152 4.152 24 C -0.154 4.154 25 C -0.156 4.156 26 C -0.157 4.157 27 C -0.142 4.142 28 H 0.065 0.935 29 H 0.220 0.780 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.250 0.750 33 H 0.212 0.788 34 H 0.270 0.730 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.713 -16.571 6.572 18.440 hybrid contribution 0.586 1.751 -0.220 1.859 sum -4.127 -14.821 6.352 16.644 Atomic orbital electron populations 1.69661 1.05103 1.25663 1.57523 1.24729 0.95472 0.97631 1.02917 0.86279 0.78517 0.83590 0.77840 1.21276 1.21756 1.21289 1.19162 0.90968 0.84089 1.42973 0.91218 1.42339 1.05975 0.99713 1.89487 1.21016 0.93140 0.85260 0.98945 1.21395 0.90654 0.94530 0.89746 0.89295 1.45799 1.13721 1.53125 1.21028 1.16932 0.81366 0.79460 0.84773 1.90809 1.76340 1.42254 1.31977 1.20113 0.95058 1.00987 0.93686 1.27088 0.97471 1.05816 1.00571 1.85228 1.19402 1.51795 1.10145 1.25005 0.90572 1.00817 0.89613 1.84827 1.85617 1.30109 1.23397 1.66774 1.31915 1.18524 1.00497 1.21524 0.96366 0.94225 0.99060 1.21604 0.98148 0.97305 0.98173 1.21512 0.97584 0.94838 1.01472 1.21529 0.97432 0.97785 0.98837 1.21571 0.98085 0.97937 0.98101 1.21625 0.96916 0.92871 1.02806 0.93548 0.78027 0.95837 0.94476 0.75024 0.78834 0.72997 0.91228 0.91751 0.91145 0.92226 0.92274 0.92709 0.92108 0.92590 0.92619 0.92428 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -18.27 5.43 -59.91 -0.33 -18.60 16 10 C 0.14 2.83 5.31 -4.04 -0.02 2.81 16 11 C 0.14 2.41 2.00 -67.93 -0.14 2.28 16 12 H 0.09 1.69 7.58 -51.93 -0.39 1.29 16 13 N -0.69 -11.87 4.40 -54.96 -0.24 -12.11 16 14 C 0.59 10.15 6.14 -12.62 -0.08 10.07 16 15 O -0.54 -9.82 13.79 5.24 0.07 -9.75 16 16 C 0.03 0.51 6.67 -84.60 -0.56 -0.05 16 17 C -0.17 -2.08 10.84 29.61 0.32 -1.76 16 18 S 0.09 0.88 23.42 -107.50 -2.52 -1.64 16 19 C 0.26 3.24 8.88 51.67 0.46 3.70 16 20 O -0.43 -4.41 13.64 -18.18 -0.25 -4.65 16 21 N -0.45 -6.89 10.01 -11.34 -0.11 -7.01 16 22 C -0.09 -1.29 1.96 -90.62 -0.18 -1.47 16 23 C -0.11 -1.46 4.85 -26.73 -0.13 -1.59 16 24 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 25 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 26 C -0.12 -1.39 5.92 -26.71 -0.16 -1.55 16 27 C -0.10 -1.46 3.73 -26.70 -0.10 -1.56 16 28 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.39 10.38 7.33 -40.82 -0.30 10.09 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.72 6.71 -51.93 -0.35 0.38 16 32 H 0.41 7.42 8.08 -40.82 -0.33 7.09 16 33 H 0.19 2.07 8.01 -52.49 -0.42 1.65 16 34 H 0.41 2.25 9.06 45.56 0.41 2.66 16 35 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.92 6.54 -51.93 -0.34 0.58 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.88 5.78 -51.93 -0.30 0.58 16 45 H 0.07 1.09 7.53 -51.93 -0.39 0.70 16 LS Contribution 374.30 15.07 5.64 5.64 Total: -1.00 -32.63 374.30 -8.94 -41.57 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -5.76 Total: 15.83 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.15 Total: 0.78 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: 0.04 Total: -65.09 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.18 Total: -14.40 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.52 Total: -1.64 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.63 -8.94 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319660485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.700 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds