Wall clock time and date at job start Tue Mar 31 2020 22:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 119.99845 * 2 1 4 4 H 1.48503 * 109.46823 * 239.99565 * 3 2 1 5 5 H 1.48498 * 109.46839 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46903 * 120.00073 * 3 2 1 7 7 C 1.38811 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00454 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99776 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00271 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47309 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47430 * 64.99837 * 11 10 9 13 13 N 1.46499 * 109.46833 * 304.99485 * 11 10 9 14 14 C 1.34784 * 119.99893 * 155.00334 * 13 11 10 15 15 O 1.21646 * 119.99867 * 359.97438 * 14 13 11 16 16 C 1.47183 * 120.00013 * 179.72693 * 14 13 11 17 17 C 1.35085 * 122.48647 * 179.73769 * 16 14 13 18 18 S 1.76189 * 108.22022 * 179.87796 * 17 16 14 19 19 C 1.76060 * 90.15561 * 0.31705 * 18 17 16 20 20 O 1.35496 * 125.17753 * 179.81688 * 19 18 17 21 21 N 1.29245 * 109.64000 * 359.81269 * 19 18 17 22 22 C 1.52998 * 109.47053 * 185.00046 * 11 10 9 23 23 C 1.53000 * 109.47154 * 299.99761 * 22 11 10 24 24 C 1.52998 * 109.47154 * 179.97438 * 23 22 11 25 25 C 1.53001 * 109.47375 * 60.00110 * 24 23 22 26 26 C 1.52995 * 109.46592 * 299.99907 * 25 24 23 27 27 C 1.53000 * 109.47263 * 179.97438 * 22 11 10 28 28 H 0.96996 * 120.00455 * 359.97438 * 1 2 3 29 29 H 0.97006 * 120.00522 * 0.02562 * 9 7 2 30 30 H 1.08994 * 109.46694 * 59.99850 * 10 9 7 31 31 H 1.09004 * 109.46507 * 300.00546 * 10 9 7 32 32 H 0.97005 * 120.00261 * 335.00546 * 13 11 10 33 33 H 1.08001 * 125.88994 * 359.96194 * 17 16 14 34 34 H 0.96708 * 113.99761 * 269.99952 * 20 19 18 35 35 H 1.09007 * 109.47248 * 59.99543 * 22 11 10 36 36 H 1.09002 * 109.47232 * 300.00298 * 23 22 11 37 37 H 1.09006 * 109.46987 * 59.99927 * 23 22 11 38 38 H 1.09001 * 109.47552 * 299.99526 * 24 23 22 39 39 H 1.09007 * 109.46811 * 179.97438 * 24 23 22 40 40 H 1.08993 * 109.47257 * 179.97438 * 25 24 23 41 41 H 1.08996 * 109.46845 * 59.99431 * 25 24 23 42 42 H 1.09002 * 109.47498 * 299.99497 * 26 25 24 43 43 H 1.09005 * 109.47199 * 180.02562 * 26 25 24 44 44 H 1.08998 * 109.47431 * 299.99873 * 27 22 11 45 45 H 1.08997 * 109.46857 * 60.00387 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 1.0639 -4.8197 0.0022 12 1 0.4974 -4.8139 -0.9288 13 7 0.1450 -4.6758 1.1341 14 6 -1.0795 -5.2367 1.0834 15 8 -1.4218 -5.8621 0.0977 16 6 -2.0006 -5.0973 2.2230 17 6 -3.2402 -5.6341 2.2239 18 16 -4.0081 -5.2446 3.7610 19 6 -2.5654 -4.3707 4.2658 20 8 -2.4122 -3.7369 5.4535 21 7 -1.6747 -4.4259 3.3308 22 6 1.8248 -6.1411 0.1280 23 6 2.7846 -6.2914 -1.0540 24 6 3.5460 -7.6125 -0.9279 25 6 2.5522 -8.7758 -0.9269 26 6 1.5925 -8.6255 0.2551 27 6 0.8306 -7.3040 0.1293 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 0.0016 30 1 2.6855 -3.7141 0.8911 31 1 2.6842 -3.7148 -0.8889 32 1 0.4178 -4.1768 1.9200 33 1 -3.6836 -6.2048 1.4213 34 1 -2.6931 -2.8116 5.4447 35 1 2.3915 -6.1469 1.0592 36 1 2.2180 -6.2855 -1.9852 37 1 3.4930 -5.4628 -1.0545 38 1 4.1127 -7.6179 0.0031 39 1 4.2295 -7.7197 -1.7703 40 1 3.0946 -9.7170 -0.8375 41 1 1.9856 -8.7704 -1.8579 42 1 2.1591 -8.6309 1.1863 43 1 0.8847 -9.4545 0.2562 44 1 0.1471 -7.1968 0.9715 45 1 0.2638 -7.2984 -0.8017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319660485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:03 Heat of formation + Delta-G solvation = -58.609608 kcal Electronic energy + Delta-G solvation = -27917.478361 eV Core-core repulsion = 24060.779943 eV Total energy + Delta-G solvation = -3856.698418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.73200 -40.48981 -39.17599 -38.03323 -37.19910 -35.35271 -33.15471 -32.14918 -31.55419 -31.03924 -28.72445 -26.67750 -25.44165 -24.03656 -23.41294 -22.96993 -21.49880 -21.11251 -20.65889 -20.30395 -19.25568 -18.88082 -17.61618 -17.27212 -16.99949 -16.64503 -16.49811 -15.76448 -15.39683 -15.32281 -15.19998 -15.14577 -14.88756 -14.79790 -14.53086 -14.19105 -13.82322 -13.26704 -13.16884 -13.08166 -12.88104 -12.85426 -12.83112 -12.67512 -12.43423 -12.12517 -11.97633 -11.84938 -11.78030 -11.42449 -11.24764 -11.10085 -10.96298 -10.82300 -10.74860 -10.66317 -10.04247 -9.79028 -9.00531 -7.93355 -5.23160 -0.67320 -0.09345 0.34186 0.79751 1.47472 1.50557 1.56376 2.13363 2.29907 2.50138 2.56654 3.40385 3.56046 3.62700 3.83139 3.87495 4.06187 4.12248 4.14528 4.16423 4.28337 4.46286 4.50234 4.56912 4.65764 4.66366 4.68969 4.72973 4.79326 4.91038 5.01913 5.15048 5.21250 5.28973 5.31430 5.35144 5.42649 5.46207 5.51171 5.55492 5.67347 6.13388 6.26481 6.32574 6.58091 7.13780 7.33678 8.06793 8.31315 9.29586 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.006126 B = 0.005187 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4569.635397 B = 5397.091171 C = 9291.486928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.974 3.026 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.742 5.742 10 C 0.147 3.853 11 C 0.151 3.849 12 H 0.065 0.935 13 N -0.691 5.691 14 C 0.588 3.412 15 O -0.557 6.557 16 C 0.003 3.997 17 C -0.170 4.170 18 S 0.177 5.823 19 C 0.249 3.751 20 O -0.436 6.436 21 N -0.490 5.490 22 C -0.082 4.082 23 C -0.113 4.113 24 C -0.112 4.112 25 C -0.116 4.116 26 C -0.116 4.116 27 C -0.096 4.096 28 H 0.250 0.750 29 H 0.373 0.627 30 H 0.032 0.968 31 H 0.045 0.955 32 H 0.409 0.591 33 H 0.207 0.793 34 H 0.430 0.570 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.040 0.960 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.901 -16.900 7.357 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.803 3.197 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.385 5.385 10 C 0.021 3.979 11 C 0.047 3.953 12 H 0.083 0.917 13 N -0.339 5.339 14 C 0.373 3.627 15 O -0.436 6.436 16 C -0.129 4.129 17 C -0.311 4.311 18 S 0.425 5.575 19 C -0.071 4.071 20 O -0.247 6.247 21 N -0.217 5.217 22 C -0.102 4.102 23 C -0.151 4.151 24 C -0.150 4.150 25 C -0.153 4.153 26 C -0.153 4.153 27 C -0.134 4.134 28 H 0.058 0.942 29 H 0.205 0.795 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.245 0.755 33 H 0.224 0.776 34 H 0.293 0.707 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.211 -17.641 7.480 19.619 hybrid contribution 0.343 2.033 -0.431 2.106 sum -3.869 -15.608 7.050 17.558 Atomic orbital electron populations 1.69834 1.06678 1.25972 1.59388 1.25548 0.96297 1.01040 1.03595 0.85214 0.77162 0.79169 0.78193 1.20466 1.22342 1.20293 1.19594 0.91544 0.85142 1.41383 0.90379 1.42509 1.05553 1.00958 1.89461 1.21136 0.93475 0.84066 0.99274 1.21242 0.90052 0.95157 0.88884 0.91727 1.45799 1.14152 1.53321 1.20652 1.17261 0.81371 0.78812 0.85283 1.90778 1.76702 1.43177 1.32985 1.19850 0.95893 1.03448 0.93687 1.27425 0.96837 1.04456 1.02429 1.84916 1.16180 1.49327 1.07038 1.25246 0.91425 1.00955 0.89488 1.84789 1.85984 1.31666 1.22267 1.66688 1.33926 1.19844 1.01265 1.21447 0.96320 0.92490 0.99949 1.21601 0.97787 0.98723 0.97037 1.21497 0.97576 0.93443 1.02460 1.21524 0.97176 0.98610 0.98029 1.21548 0.98292 0.96465 0.99001 1.21490 0.96611 0.94242 1.01042 0.94171 0.79546 0.95049 0.93721 0.75540 0.77576 0.70741 0.90765 0.92505 0.91424 0.91567 0.90826 0.90682 0.92485 0.91962 0.91926 0.94087 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.76 13.06 21.65 0.28 -59.48 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 3 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 9 N -0.74 -38.03 5.43 -343.44 -1.87 -39.89 16 10 C 0.15 5.88 5.31 86.38 0.46 6.33 16 11 C 0.15 5.36 2.00 44.99 0.09 5.45 16 12 H 0.06 2.60 7.58 -2.39 -0.02 2.59 16 13 N -0.69 -25.03 4.40 -446.03 -1.96 -26.99 16 14 C 0.59 21.15 6.14 86.59 0.53 21.68 16 15 O -0.56 -21.39 13.79 -4.18 -0.06 -21.44 16 16 C 0.00 0.09 6.67 40.50 0.27 0.36 16 17 C -0.17 -4.09 10.84 67.09 0.73 -3.36 16 18 S 0.18 3.19 23.42 -56.49 -1.32 1.87 16 19 C 0.25 5.98 8.88 130.62 1.16 7.14 16 20 O -0.44 -8.40 13.64 -87.97 -1.20 -9.60 16 21 N -0.49 -15.21 10.01 -304.24 -3.05 -18.26 16 22 C -0.08 -2.33 1.96 -10.79 -0.02 -2.35 16 23 C -0.11 -2.83 4.85 30.59 0.15 -2.69 16 24 C -0.11 -2.22 5.92 30.59 0.18 -2.04 16 25 C -0.12 -2.23 5.92 30.59 0.18 -2.05 16 26 C -0.12 -2.54 5.92 30.61 0.18 -2.36 16 27 C -0.10 -2.71 3.73 30.61 0.11 -2.59 16 28 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.37 20.88 7.33 -92.70 -0.68 20.20 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.74 6.71 -2.38 -0.02 1.73 16 32 H 0.41 15.45 8.08 -92.70 -0.75 14.70 16 33 H 0.21 4.25 8.01 -2.91 -0.02 4.23 16 34 H 0.43 4.19 9.06 -74.05 -0.67 3.51 16 35 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.72 6.54 -2.38 -0.02 1.70 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.04 1.28 5.78 -2.39 -0.01 1.27 16 45 H 0.05 1.64 7.53 -2.39 -0.02 1.62 16 Total: -1.00 -71.25 374.30 -2.87 -74.12 By element: Atomic # 1 Polarization: 45.54 SS G_CDS: -1.05 Total: 44.49 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 5.33 Total: 6.98 kcal Atomic # 7 Polarization: -138.03 SS G_CDS: -6.59 Total: -144.62 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -1.26 Total: -31.04 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.32 Total: 1.87 kcal Total: -71.25 -2.87 -74.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319660485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.510 kcal (2) G-P(sol) polarization free energy of solvation -71.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds