Wall clock time and date at job start Tue Mar 31 2020 22:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99898 * 2 1 4 4 H 1.48504 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47205 * 300.00228 * 3 2 1 6 6 H 1.48498 * 109.47313 * 60.00027 * 3 2 1 7 7 C 1.38806 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99658 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00349 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00221 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47055 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47600 * 304.99882 * 11 10 9 13 13 O 1.42902 * 109.47020 * 65.00283 * 11 10 9 14 14 C 1.53005 * 109.46990 * 185.00035 * 11 10 9 15 15 N 1.46503 * 109.47109 * 180.02562 * 14 11 10 16 16 C 1.34774 * 120.00122 * 180.02562 * 15 14 11 17 17 O 1.21284 * 120.00017 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00178 * 179.97438 * 16 15 14 19 19 N 1.46502 * 109.47203 * 179.97438 * 18 16 15 20 20 C 1.34779 * 119.99920 * 179.97438 * 19 18 16 21 21 O 1.21549 * 120.00068 * 0.02562 * 20 19 18 22 22 C 1.47851 * 119.99767 * 180.02562 * 20 19 18 23 23 C 1.39589 * 120.13332 * 359.97438 * 22 20 19 24 24 C 1.37951 * 119.90259 * 180.02562 * 23 22 20 25 25 C 1.38342 * 120.17727 * 359.97438 * 24 23 22 26 26 C 1.38552 * 120.26203 * 0.02562 * 25 24 23 27 27 F 1.35101 * 119.95001 * 179.97438 * 26 25 24 28 28 C 1.38203 * 120.09716 * 359.97438 * 26 25 24 29 29 H 0.96994 * 119.99739 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99460 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46928 * 59.99877 * 10 9 7 32 32 H 1.09001 * 109.47252 * 300.00355 * 10 9 7 33 33 H 0.96708 * 113.99735 * 59.99846 * 13 11 10 34 34 H 1.08999 * 109.47092 * 60.00353 * 14 11 10 35 35 H 1.09004 * 109.47380 * 299.99870 * 14 11 10 36 36 H 0.97000 * 119.99791 * 0.02562 * 15 14 11 37 37 H 1.08999 * 109.47043 * 59.99717 * 18 16 15 38 38 H 1.08998 * 109.47307 * 299.99897 * 18 16 15 39 39 H 0.96998 * 120.00336 * 0.02562 * 19 18 16 40 40 H 1.08001 * 120.04668 * 359.97438 * 23 22 20 41 41 H 1.08004 * 119.90773 * 180.02562 * 24 23 22 42 42 H 1.07994 * 119.86905 * 179.97438 * 25 24 23 43 43 H 1.08008 * 120.08787 * 180.27891 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0639 -4.8196 -0.0008 12 1 0.3808 -4.7130 0.8418 13 8 0.3202 -4.8114 -1.2210 14 6 1.8249 -6.1411 0.1238 15 7 0.8730 -7.2547 0.1240 16 6 1.3189 -8.5225 0.2254 17 8 2.5084 -8.7415 0.3159 18 6 0.3397 -9.6679 0.2262 19 7 1.0683 -10.9333 0.3453 20 6 0.3937 -12.0999 0.3678 21 8 -0.8192 -12.1021 0.2887 22 6 1.1291 -13.3768 0.4886 23 6 2.5221 -13.3775 0.5791 24 6 3.2034 -14.5717 0.6911 25 6 2.5099 -15.7685 0.7146 26 6 1.1272 -15.7761 0.6252 27 9 0.4563 -16.9485 0.6483 28 6 0.4335 -14.5862 0.5127 29 1 -0.4849 0.8400 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.6855 -3.7149 0.8878 32 1 2.6841 -3.7141 -0.8921 33 1 0.8654 -4.9027 -2.0145 34 1 2.3922 -6.1474 1.0545 35 1 2.5081 -6.2479 -0.7189 36 1 -0.0783 -7.0796 0.0512 37 1 -0.2274 -9.6618 -0.7047 38 1 -0.3437 -9.5611 1.0686 39 1 2.0362 -10.9315 0.4088 40 1 3.0656 -12.4444 0.5605 41 1 4.2812 -14.5723 0.7615 42 1 3.0483 -16.7005 0.8020 43 1 -0.6446 -14.5920 0.4476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320304969.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:46 Heat of formation + Delta-G solvation = -128.230918 kcal Electronic energy + Delta-G solvation = -27165.886912 eV Core-core repulsion = 22739.956311 eV Total energy + Delta-G solvation = -4425.930601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.41122 -40.86442 -39.92706 -38.58862 -37.75473 -35.06574 -34.55500 -34.09224 -32.05475 -31.43704 -31.19772 -29.70927 -27.97671 -25.39602 -24.28839 -23.21084 -22.63700 -21.56081 -21.07554 -20.74148 -19.22131 -17.54894 -17.28580 -17.15876 -16.79152 -16.57300 -16.48708 -16.33628 -16.13730 -15.80236 -15.75302 -15.11105 -14.86985 -14.52229 -14.46244 -14.16655 -13.82557 -13.69999 -13.44863 -13.40195 -13.03388 -12.78771 -12.58135 -12.57495 -12.37816 -11.94422 -11.92140 -11.01606 -10.87355 -10.73294 -10.55493 -10.39806 -10.18446 -9.87499 -9.81695 -9.62556 -9.60081 -9.37790 -9.32835 -8.96146 -6.99557 -5.81208 -3.11302 0.11514 0.56201 2.20215 2.27093 2.31354 3.02613 3.15940 3.40094 3.45652 3.48036 3.65950 4.03541 4.14533 4.29850 4.40617 4.46029 4.48450 4.63035 4.68461 4.76816 4.89576 4.92236 5.10674 5.12099 5.35673 5.43685 5.49760 5.52353 5.57003 5.62120 5.63487 5.77512 5.84547 6.07505 6.18200 6.18927 6.42846 6.58527 6.95827 7.15795 7.64083 7.65476 7.79337 7.86643 8.36729 9.48639 10.04351 10.39757 11.41110 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.043460 B = 0.001412 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.117072 B =19829.077199 C =20348.369158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.088 3.912 12 H 0.106 0.894 13 O -0.552 6.552 14 C 0.089 3.911 15 N -0.712 5.712 16 C 0.508 3.492 17 O -0.544 6.544 18 C 0.099 3.901 19 N -0.711 5.711 20 C 0.562 3.438 21 O -0.531 6.531 22 C -0.104 4.104 23 C -0.095 4.095 24 C -0.096 4.096 25 C -0.128 4.128 26 C 0.092 3.908 27 F -0.135 7.135 28 C -0.095 4.095 29 H 0.255 0.745 30 H 0.388 0.612 31 H 0.029 0.971 32 H 0.023 0.977 33 H 0.374 0.626 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.410 0.590 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.413 0.587 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.425 -32.259 0.912 32.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.371 5.371 10 C -0.001 4.001 11 C 0.028 3.972 12 H 0.124 0.876 13 O -0.357 6.357 14 C -0.035 4.035 15 N -0.364 5.364 16 C 0.293 3.707 17 O -0.422 6.422 18 C -0.028 4.028 19 N -0.367 5.367 20 C 0.349 3.651 21 O -0.408 6.408 22 C -0.108 4.108 23 C -0.114 4.114 24 C -0.114 4.114 25 C -0.147 4.147 26 C 0.073 3.927 27 F -0.113 7.113 28 C -0.114 4.114 29 H 0.065 0.935 30 H 0.223 0.777 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.221 0.779 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.245 0.755 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.252 0.748 40 H 0.155 0.845 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.019 -32.209 1.332 32.486 hybrid contribution 0.591 0.841 -0.330 1.080 sum 4.610 -31.367 1.002 31.720 Atomic orbital electron populations 1.69686 1.05123 1.25639 1.57270 1.24764 0.95532 0.97760 1.02716 0.86110 0.78758 0.84002 0.77240 1.20536 1.21793 1.21791 1.19259 0.91038 0.84072 1.43274 0.91133 1.42238 1.06070 0.99382 1.89376 1.21193 0.93470 0.86584 0.98894 1.22417 0.94638 0.91713 0.88406 0.87580 1.86592 1.37493 1.96227 1.15404 1.22174 0.92141 0.85761 1.03430 1.45812 1.11741 1.05260 1.73568 1.20424 0.89414 0.84367 0.76506 1.90701 1.16797 1.84496 1.50191 1.21111 0.94166 0.82175 1.05356 1.45565 1.11845 1.04539 1.74723 1.18083 0.87053 0.83337 0.76648 1.90816 1.13322 1.87355 1.49308 1.19657 0.93632 0.92898 1.04570 1.21488 0.92893 0.99365 0.97625 1.21020 1.00814 0.91008 0.98535 1.21422 0.92338 1.00302 1.00659 1.17549 0.90272 0.81313 1.03601 1.91540 1.80509 1.45363 1.93917 1.21240 1.01911 0.89859 0.98435 0.93476 0.77712 0.95360 0.95905 0.77927 0.90134 0.90793 0.75452 0.87769 0.87804 0.74813 0.84488 0.84001 0.84084 0.83191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.25 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -17.80 5.55 -59.91 -0.33 -18.13 16 10 C 0.13 2.33 5.90 -4.05 -0.02 2.30 16 11 C 0.09 1.23 3.09 -26.73 -0.08 1.14 16 12 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 13 O -0.55 -7.95 13.03 -35.23 -0.46 -8.41 16 14 C 0.09 1.00 5.34 -4.04 -0.02 0.98 16 15 N -0.71 -6.71 5.45 -60.29 -0.33 -7.04 16 16 C 0.51 5.00 7.90 -10.99 -0.09 4.92 16 17 O -0.54 -6.92 15.67 5.55 0.09 -6.83 16 18 C 0.10 0.79 6.15 -5.19 -0.03 0.76 16 19 N -0.71 -5.91 5.48 -62.43 -0.34 -6.26 16 20 C 0.56 5.42 7.77 -12.33 -0.10 5.32 16 21 O -0.53 -6.73 16.35 5.32 0.09 -6.64 16 22 C -0.10 -0.82 5.87 -104.98 -0.62 -1.44 16 23 C -0.09 -0.54 9.54 -39.18 -0.37 -0.91 16 24 C -0.10 -0.43 10.03 -39.65 -0.40 -0.83 16 25 C -0.13 -0.67 10.02 -39.43 -0.40 -1.07 16 26 C 0.09 0.67 7.29 -39.48 -0.29 0.38 16 27 F -0.13 -1.11 17.26 2.25 0.04 -1.07 16 28 C -0.09 -0.77 9.57 -39.11 -0.37 -1.14 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.39 10.23 7.67 -40.82 -0.31 9.92 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.37 4.39 9.05 45.56 0.41 4.80 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.41 3.29 8.35 -40.82 -0.34 2.95 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.41 3.10 5.47 -40.82 -0.22 2.87 16 40 H 0.14 0.56 6.40 -52.49 -0.34 0.23 16 41 H 0.14 0.28 8.06 -52.48 -0.42 -0.14 16 42 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.15 1.25 7.65 -52.48 -0.40 0.85 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -35.07 380.51 -7.40 -42.47 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -4.55 Total: 13.19 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -3.03 Total: 3.09 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.28 Total: -58.61 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.28 Total: -21.88 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.07 -7.40 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320304969.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.764 kcal (2) G-P(sol) polarization free energy of solvation -35.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds