Wall clock time and date at job start Tue Mar 31 2020 22:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99898 * 2 1 4 4 H 1.48504 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47205 * 300.00228 * 3 2 1 6 6 H 1.48498 * 109.47313 * 60.00027 * 3 2 1 7 7 C 1.38806 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99658 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00349 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00221 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47055 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47600 * 304.99882 * 11 10 9 13 13 O 1.42902 * 109.47020 * 65.00283 * 11 10 9 14 14 C 1.53005 * 109.46990 * 185.00035 * 11 10 9 15 15 N 1.46503 * 109.47109 * 180.02562 * 14 11 10 16 16 C 1.34774 * 120.00122 * 180.02562 * 15 14 11 17 17 O 1.21284 * 120.00017 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00178 * 179.97438 * 16 15 14 19 19 N 1.46502 * 109.47203 * 179.97438 * 18 16 15 20 20 C 1.34779 * 119.99920 * 179.97438 * 19 18 16 21 21 O 1.21549 * 120.00068 * 0.02562 * 20 19 18 22 22 C 1.47851 * 119.99767 * 180.02562 * 20 19 18 23 23 C 1.39589 * 120.13332 * 359.97438 * 22 20 19 24 24 C 1.37951 * 119.90259 * 180.02562 * 23 22 20 25 25 C 1.38342 * 120.17727 * 359.97438 * 24 23 22 26 26 C 1.38552 * 120.26203 * 0.02562 * 25 24 23 27 27 F 1.35101 * 119.95001 * 179.97438 * 26 25 24 28 28 C 1.38203 * 120.09716 * 359.97438 * 26 25 24 29 29 H 0.96994 * 119.99739 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99460 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46928 * 59.99877 * 10 9 7 32 32 H 1.09001 * 109.47252 * 300.00355 * 10 9 7 33 33 H 0.96708 * 113.99735 * 59.99846 * 13 11 10 34 34 H 1.08999 * 109.47092 * 60.00353 * 14 11 10 35 35 H 1.09004 * 109.47380 * 299.99870 * 14 11 10 36 36 H 0.97000 * 119.99791 * 0.02562 * 15 14 11 37 37 H 1.08999 * 109.47043 * 59.99717 * 18 16 15 38 38 H 1.08998 * 109.47307 * 299.99897 * 18 16 15 39 39 H 0.96998 * 120.00336 * 0.02562 * 19 18 16 40 40 H 1.08001 * 120.04668 * 359.97438 * 23 22 20 41 41 H 1.08004 * 119.90773 * 180.02562 * 24 23 22 42 42 H 1.07994 * 119.86905 * 179.97438 * 25 24 23 43 43 H 1.08008 * 120.08787 * 180.27891 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0639 -4.8196 -0.0008 12 1 0.3808 -4.7130 0.8418 13 8 0.3202 -4.8114 -1.2210 14 6 1.8249 -6.1411 0.1238 15 7 0.8730 -7.2547 0.1240 16 6 1.3189 -8.5225 0.2254 17 8 2.5084 -8.7415 0.3159 18 6 0.3397 -9.6679 0.2262 19 7 1.0683 -10.9333 0.3453 20 6 0.3937 -12.0999 0.3678 21 8 -0.8192 -12.1021 0.2887 22 6 1.1291 -13.3768 0.4886 23 6 2.5221 -13.3775 0.5791 24 6 3.2034 -14.5717 0.6911 25 6 2.5099 -15.7685 0.7146 26 6 1.1272 -15.7761 0.6252 27 9 0.4563 -16.9485 0.6483 28 6 0.4335 -14.5862 0.5127 29 1 -0.4849 0.8400 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.6855 -3.7149 0.8878 32 1 2.6841 -3.7141 -0.8921 33 1 0.8654 -4.9027 -2.0145 34 1 2.3922 -6.1474 1.0545 35 1 2.5081 -6.2479 -0.7189 36 1 -0.0783 -7.0796 0.0512 37 1 -0.2274 -9.6618 -0.7047 38 1 -0.3437 -9.5611 1.0686 39 1 2.0362 -10.9315 0.4088 40 1 3.0656 -12.4444 0.5605 41 1 4.2812 -14.5723 0.7615 42 1 3.0483 -16.7005 0.8020 43 1 -0.6446 -14.5920 0.4476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320304969.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:46 Heat of formation + Delta-G solvation = -157.233583 kcal Electronic energy + Delta-G solvation = -27167.144562 eV Core-core repulsion = 22739.956311 eV Total energy + Delta-G solvation = -4427.188250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.98338 -41.57710 -40.70827 -39.23245 -38.88413 -36.13166 -35.76862 -35.31404 -33.21111 -32.56939 -31.74835 -30.89537 -28.96681 -26.82107 -25.06966 -24.21069 -23.66550 -22.76135 -21.74517 -21.62036 -19.88734 -19.21683 -18.32655 -17.89690 -17.49752 -17.35437 -17.26360 -17.05537 -16.83162 -16.63819 -16.62002 -16.39165 -15.96857 -15.74760 -15.41193 -15.02623 -14.86408 -14.75963 -14.38039 -14.25938 -14.18865 -13.99818 -13.66979 -13.27327 -13.12773 -12.99960 -12.95013 -12.78461 -12.42786 -12.11477 -11.95861 -11.80386 -11.31370 -11.30296 -10.99958 -10.86952 -10.48088 -10.22102 -10.12623 -9.86618 -9.00601 -7.95128 -5.24370 -0.40322 0.08269 1.42761 1.48376 1.48816 1.58325 1.59437 1.63254 2.26824 2.56423 2.62355 3.15553 3.36429 3.43532 3.49947 3.58405 3.64822 3.72218 3.95805 4.01457 4.03482 4.22038 4.23402 4.28209 4.32737 4.41671 4.63860 4.64004 4.72878 4.92113 4.95385 4.98450 5.06880 5.12648 5.21250 5.22309 5.27862 5.49070 5.72899 6.26354 6.29236 6.38248 6.81374 6.95960 7.04284 7.33637 8.09445 8.31466 9.28255 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.043460 B = 0.001412 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.117072 B =19829.077199 C =20348.369158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.247 4.247 8 H 0.077 0.923 9 N -0.741 5.741 10 C 0.121 3.879 11 C 0.106 3.894 12 H 0.100 0.900 13 O -0.564 6.564 14 C 0.103 3.897 15 N -0.705 5.705 16 C 0.514 3.486 17 O -0.571 6.571 18 C 0.102 3.898 19 N -0.704 5.704 20 C 0.562 3.438 21 O -0.570 6.570 22 C -0.121 4.121 23 C -0.089 4.089 24 C -0.088 4.088 25 C -0.119 4.119 26 C 0.075 3.925 27 F -0.145 7.145 28 C -0.110 4.110 29 H 0.251 0.749 30 H 0.376 0.624 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.386 0.614 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.418 0.582 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.418 0.582 40 H 0.155 0.845 41 H 0.177 0.823 42 H 0.166 0.834 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.725 -33.245 0.933 33.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.379 4.379 8 H 0.095 0.905 9 N -0.384 5.384 10 C -0.006 4.006 11 C 0.046 3.954 12 H 0.118 0.882 13 O -0.370 6.370 14 C -0.022 4.022 15 N -0.357 5.357 16 C 0.300 3.700 17 O -0.451 6.451 18 C -0.025 4.025 19 N -0.360 5.360 20 C 0.350 3.650 21 O -0.450 6.450 22 C -0.124 4.124 23 C -0.108 4.108 24 C -0.105 4.105 25 C -0.138 4.138 26 C 0.056 3.944 27 F -0.124 7.124 28 C -0.130 4.130 29 H 0.060 0.940 30 H 0.208 0.792 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.235 0.765 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.255 0.745 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.258 0.742 40 H 0.172 0.828 41 H 0.194 0.806 42 H 0.184 0.816 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.366 -33.221 1.345 33.852 hybrid contribution -0.049 1.065 -0.345 1.121 sum 6.317 -32.156 1.000 32.786 Atomic orbital electron populations 1.69838 1.06662 1.25996 1.59356 1.25576 0.96363 1.01156 1.03632 0.85079 0.78283 0.79795 0.76615 1.18915 1.22132 1.22088 1.19690 0.91562 0.85352 1.41314 0.90468 1.42436 1.05741 1.00830 1.89352 1.21429 0.94269 0.85694 0.99206 1.22115 0.93528 0.91479 0.88253 0.88176 1.86573 1.38178 1.96231 1.16050 1.21885 0.91875 0.84770 1.03633 1.45689 1.11954 1.04799 1.73254 1.20605 0.89177 0.84554 0.75624 1.90691 1.18009 1.84858 1.51523 1.21150 0.93727 0.81267 1.06378 1.45536 1.12086 1.04342 1.74000 1.18359 0.86675 0.84096 0.75850 1.90791 1.14936 1.87886 1.51364 1.19589 0.94643 0.91797 1.06397 1.21736 0.91847 1.00809 0.96378 1.21425 1.02389 0.89954 0.96767 1.21762 0.91317 1.01846 0.98847 1.17743 0.91258 0.80651 1.04794 1.91510 1.80932 1.45783 1.94153 1.21205 1.01493 0.90694 0.99605 0.94036 0.79176 0.94740 0.95035 0.76549 0.90138 0.90362 0.74464 0.86748 0.86770 0.74197 0.82791 0.80594 0.81644 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 3 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 7 C -0.25 -13.49 9.99 84.03 0.84 -12.65 16 8 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -36.11 5.55 -343.46 -1.91 -38.02 16 10 C 0.12 4.28 5.90 86.38 0.51 4.79 16 11 C 0.11 2.81 3.09 30.59 0.09 2.90 16 12 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 13 O -0.56 -15.48 13.03 -148.98 -1.94 -17.42 16 14 C 0.10 2.12 5.34 86.38 0.46 2.58 16 15 N -0.71 -11.97 5.45 -463.05 -2.52 -14.49 16 16 C 0.51 9.22 7.90 87.66 0.69 9.92 16 17 O -0.57 -13.49 15.67 -3.04 -0.05 -13.54 16 18 C 0.10 1.48 6.15 85.63 0.53 2.01 16 19 N -0.70 -10.97 5.48 -469.71 -2.57 -13.54 16 20 C 0.56 10.77 7.77 86.79 0.67 11.45 16 21 O -0.57 -14.85 16.35 -3.87 -0.06 -14.91 16 22 C -0.12 -1.87 5.87 -20.09 -0.12 -1.98 16 23 C -0.09 -0.82 9.54 22.53 0.21 -0.61 16 24 C -0.09 -0.52 10.03 22.23 0.22 -0.29 16 25 C -0.12 -0.98 10.02 22.37 0.22 -0.76 16 26 C 0.07 1.06 7.29 22.34 0.16 1.23 16 27 F -0.15 -2.42 17.26 44.97 0.78 -1.65 16 28 C -0.11 -1.85 9.57 22.57 0.22 -1.63 16 29 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 30 H 0.38 19.97 7.67 -92.71 -0.71 19.26 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.39 8.43 9.05 -74.05 -0.67 7.76 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.42 5.94 8.35 -92.71 -0.77 5.17 16 37 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.42 5.62 5.47 -92.71 -0.51 5.11 16 40 H 0.15 0.85 6.40 -2.91 -0.02 0.83 16 41 H 0.18 -0.13 8.06 -2.91 -0.02 -0.16 16 42 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 43 H 0.14 2.55 7.65 -2.91 -0.02 2.52 16 Total: -1.00 -75.89 380.51 -2.34 -78.22 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: -1.56 Total: 33.32 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 5.19 Total: 13.16 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -6.72 Total: -124.65 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -2.05 Total: -45.87 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.78 Total: -1.65 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -75.89 -2.34 -78.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320304969.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.010 kcal (2) G-P(sol) polarization free energy of solvation -75.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds