Wall clock time and date at job start Tue Mar 31 2020 23:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33813 * 124.52321 * 2 1 4 4 C 1.37475 * 115.10224 * 179.70233 * 3 2 1 5 5 C 1.36648 * 113.29452 * 0.49806 * 4 3 2 6 6 C 1.46582 * 125.45764 * 179.79461 * 5 4 3 7 7 O 1.21705 * 120.00194 * 359.71931 * 6 5 4 8 8 N 1.34779 * 119.99940 * 179.72257 * 6 5 4 9 9 C 1.46506 * 119.99908 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47326 * 179.97438 * 9 8 6 11 11 O 1.21292 * 119.99776 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00409 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00306 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46581 * 325.00172 * 13 12 10 15 15 C 1.52997 * 109.46969 * 84.99801 * 13 12 10 16 16 C 1.52992 * 109.47005 * 205.00035 * 13 12 10 17 17 C 1.52997 * 109.47482 * 64.99872 * 16 13 12 18 18 N 1.46505 * 109.47212 * 179.97438 * 17 16 13 19 19 C 1.36936 * 119.99992 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99834 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00093 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00145 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00180 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47586 * 89.99558 * 23 21 19 25 25 H 1.48505 * 109.47293 * 210.00502 * 23 21 19 26 26 H 1.48505 * 109.46772 * 329.99807 * 23 21 19 27 27 S 1.70618 * 124.52501 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.46841 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46830 * 299.99640 * 1 2 3 30 30 H 1.09001 * 109.46865 * 60.00130 * 1 2 3 31 31 H 1.08002 * 122.45222 * 359.96104 * 3 2 1 32 32 H 1.07997 * 123.35315 * 180.29138 * 4 3 2 33 33 H 0.96996 * 120.00189 * 359.97438 * 8 6 5 34 34 H 1.08997 * 109.47408 * 59.99282 * 9 8 6 35 35 H 1.09008 * 109.46486 * 299.99503 * 9 8 6 36 36 H 0.97003 * 119.99459 * 359.97438 * 12 10 9 37 37 H 1.09000 * 109.47346 * 59.99964 * 15 13 12 38 38 H 1.09007 * 109.46964 * 180.02562 * 15 13 12 39 39 H 1.09004 * 109.47224 * 299.99986 * 15 13 12 40 40 H 1.09002 * 109.47103 * 304.99625 * 16 13 12 41 41 H 1.08998 * 109.46862 * 185.00437 * 16 13 12 42 42 H 1.09002 * 109.47153 * 59.99783 * 17 16 13 43 43 H 1.09001 * 109.46832 * 299.99974 * 17 16 13 44 44 H 0.96996 * 119.99606 * 0.02562 * 18 17 16 45 45 H 0.97010 * 119.99864 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8775 0.0065 5 6 3.9493 -0.4491 0.0009 6 6 5.3123 -0.9883 0.0013 7 8 6.2659 -0.2321 0.0019 8 7 5.5096 -2.3216 0.0011 9 6 6.8720 -2.8605 0.0021 10 6 6.8165 -4.3664 0.0022 11 8 5.7445 -4.9338 0.0019 12 7 7.9580 -5.0829 0.0025 13 6 7.9041 -6.5469 0.0032 14 1 7.0494 -6.8786 0.5927 15 6 7.7597 -7.0525 -1.4336 16 6 9.1917 -7.1043 0.6131 17 6 9.2740 -6.7017 2.0868 18 7 10.5067 -7.2361 2.6709 19 6 10.7980 -7.0014 3.9882 20 1 10.1187 -6.4227 4.5967 21 6 11.9661 -7.5072 4.5415 22 7 12.2458 -7.2821 5.8078 23 14 13.1414 -8.5075 3.4890 24 1 14.1298 -7.6006 2.8521 25 1 13.8521 -9.4940 4.3417 26 1 12.3763 -9.2233 2.4366 27 16 2.4740 -1.4057 0.0006 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8430 2.0965 -0.0006 32 1 4.3550 1.6702 0.0119 33 1 4.7497 -2.9243 0.0009 34 1 7.3981 -2.5166 0.8925 35 1 7.3995 -2.5160 -0.8875 36 1 8.8154 -4.6291 0.0023 37 1 8.6143 -6.7207 -2.0232 38 1 7.7191 -8.1418 -1.4331 39 1 6.8423 -6.6553 -1.8681 40 1 10.0514 -6.7014 0.0777 41 1 9.1907 -8.1914 0.5328 42 1 8.4143 -7.1047 2.6221 43 1 9.2750 -5.6146 2.1669 44 1 11.1169 -7.7554 2.1244 45 1 13.0625 -7.6353 6.1944 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320626427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:23 Heat of formation + Delta-G solvation = -37.251509 kcal Electronic energy + Delta-G solvation = -25680.823984 eV Core-core repulsion = 21825.051722 eV Total energy + Delta-G solvation = -3855.772261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.49456 -39.58512 -38.09575 -36.83123 -34.78211 -34.51163 -32.55990 -32.14455 -31.09304 -28.93700 -28.32710 -26.81506 -24.10450 -23.84515 -22.09234 -21.44598 -21.07062 -20.66932 -19.82216 -18.49506 -17.66739 -16.99745 -16.83309 -16.21396 -16.03293 -15.79721 -15.16469 -14.96545 -14.59960 -14.37748 -14.18618 -14.10825 -13.77368 -13.56262 -13.42363 -13.37728 -13.12924 -12.79405 -12.64932 -12.55741 -12.32960 -12.24150 -12.13249 -11.58378 -11.30636 -11.28680 -10.97284 -10.78803 -10.58022 -10.44453 -10.17598 -10.11982 -9.62025 -9.57444 -9.22302 -9.03020 -8.97920 -8.91948 -7.26828 -5.78971 -3.15308 0.11172 1.05319 1.46796 1.99525 2.36492 2.50524 2.89474 3.20210 3.34714 3.36877 3.43018 4.29579 4.36735 4.54814 4.56443 4.70459 4.73146 4.91428 4.99833 4.99957 5.08065 5.12952 5.16493 5.17439 5.41481 5.45917 5.54898 5.57364 5.59026 5.71900 5.75322 5.83050 5.86543 5.91849 5.96830 6.07851 6.13705 6.33344 6.64833 6.68970 7.09418 7.29115 7.80328 7.96035 7.96835 8.39679 9.18477 9.90567 10.09918 11.39313 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.001877 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.037883 B =14916.213656 C =15555.687218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.194 4.194 3 C -0.160 4.160 4 C -0.046 4.046 5 C -0.273 4.273 6 C 0.595 3.405 7 O -0.529 6.529 8 N -0.715 5.715 9 C 0.099 3.901 10 C 0.511 3.489 11 O -0.542 6.542 12 N -0.712 5.712 13 C 0.146 3.854 14 H 0.092 0.908 15 C -0.161 4.161 16 C -0.140 4.140 17 C 0.157 3.843 18 N -0.757 5.757 19 C -0.246 4.246 20 H 0.089 0.911 21 C 0.003 3.997 22 N -0.933 5.933 23 Si 0.887 3.113 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.278 1.278 27 S 0.211 5.789 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.154 0.846 33 H 0.410 0.590 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.406 0.594 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.026 0.974 43 H 0.027 0.973 44 H 0.360 0.640 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.448 13.407 -18.413 31.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.314 4.314 3 C -0.190 4.190 4 C -0.080 4.080 5 C -0.394 4.394 6 C 0.381 3.619 7 O -0.407 6.407 8 N -0.370 5.370 9 C -0.028 4.028 10 C 0.297 3.703 11 O -0.419 6.419 12 N -0.364 5.364 13 C 0.041 3.959 14 H 0.110 0.890 15 C -0.220 4.220 16 C -0.178 4.178 17 C 0.030 3.970 18 N -0.403 5.403 19 C -0.376 4.376 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.581 5.581 23 Si 0.717 3.283 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 S 0.478 5.522 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.163 0.837 32 H 0.172 0.828 33 H 0.248 0.752 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.241 0.759 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.044 0.956 43 H 0.045 0.955 44 H 0.193 0.807 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.851 12.007 -18.163 31.563 hybrid contribution 1.364 0.768 -0.547 1.658 sum -21.487 12.775 -18.710 31.224 Atomic orbital electron populations 1.20411 0.87289 1.03328 1.03475 1.24325 1.01701 0.97897 1.07450 1.19948 0.92588 0.99727 1.06767 1.20759 0.96238 0.95077 0.95911 1.24455 0.96656 0.98205 1.20058 1.16875 0.87067 0.81690 0.76263 1.90853 1.41761 1.57985 1.50106 1.45527 1.08928 1.06683 1.75841 1.21129 0.85221 0.90973 1.05513 1.20390 0.84625 0.89240 0.76077 1.90692 1.28938 1.72107 1.50207 1.46013 1.08579 1.07607 1.74158 1.21007 0.99767 0.78366 0.96744 0.88990 1.22168 1.02033 1.01592 0.96178 1.22127 0.96103 1.01853 0.97724 1.20622 0.89784 0.96747 0.89847 1.42708 1.22464 1.64891 1.10194 1.19055 1.04692 1.28533 0.85315 0.89280 1.24696 0.98063 1.00613 0.95860 1.69710 1.26581 1.50215 1.11602 0.86517 0.81561 0.80369 0.79855 1.21079 1.21705 1.20375 1.83218 0.94074 1.07201 1.67692 0.91144 0.90081 0.90136 0.83717 0.82831 0.75248 0.87582 0.87944 0.75896 0.92430 0.91408 0.92285 0.91260 0.90142 0.95580 0.95513 0.80695 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.36 10.33 36.01 0.37 0.01 16 2 C -0.19 -1.34 6.28 -35.86 -0.23 -1.57 16 3 C -0.16 -1.16 9.99 -41.41 -0.41 -1.57 16 4 C -0.05 -0.42 10.01 -40.43 -0.40 -0.83 16 5 C -0.27 -2.80 6.45 -36.79 -0.24 -3.03 16 6 C 0.59 7.22 7.78 -12.89 -0.10 7.12 16 7 O -0.53 -7.88 16.84 5.18 0.09 -7.80 16 8 N -0.71 -7.82 5.52 -62.83 -0.35 -8.17 16 9 C 0.10 0.99 6.15 -5.19 -0.03 0.96 16 10 C 0.51 5.86 7.86 -10.99 -0.09 5.78 16 11 O -0.54 -7.69 15.33 5.55 0.09 -7.60 16 12 N -0.71 -7.51 4.53 -53.81 -0.24 -7.75 16 13 C 0.15 1.69 2.57 -67.93 -0.17 1.51 16 14 H 0.09 1.23 7.58 -51.93 -0.39 0.83 16 15 C -0.16 -1.60 9.48 37.16 0.35 -1.25 16 16 C -0.14 -1.86 4.87 -26.74 -0.13 -2.00 16 17 C 0.16 2.88 6.15 -4.04 -0.02 2.86 16 18 N -0.76 -17.63 5.41 -59.91 -0.32 -17.96 16 19 C -0.25 -6.98 10.47 -15.06 -0.16 -7.13 16 20 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 22 N -0.93 -29.38 13.97 55.49 0.78 -28.60 16 23 Si 0.89 21.90 27.74 -169.99 -4.71 17.18 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 27 S 0.21 1.67 22.08 -107.50 -2.37 -0.71 16 28 H 0.07 0.26 8.11 -51.93 -0.42 -0.16 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.41 4.33 6.55 -40.82 -0.27 4.06 16 34 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 36 H 0.41 3.58 8.60 -40.82 -0.35 3.23 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.03 0.49 7.75 -51.93 -0.40 0.09 16 44 H 0.36 8.10 5.53 -40.82 -0.23 7.88 16 45 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 394.09 15.07 5.94 5.94 Total: -1.00 -35.57 394.09 -9.20 -44.77 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.73 Total: 9.83 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.36 Total: 0.88 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -0.14 Total: -62.48 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.17 Total: -15.40 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.37 Total: -0.71 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.57 -9.20 -44.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320626427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.518 kcal (2) G-P(sol) polarization free energy of solvation -35.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds