Wall clock time and date at job start Tue Mar 31 2020 22:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99848 * 2 1 4 4 H 1.48496 * 109.47088 * 240.00372 * 3 2 1 5 5 H 1.48502 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47244 * 120.00170 * 3 2 1 7 7 C 1.38812 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99411 * 163.07692 * 7 2 1 9 9 N 1.36929 * 120.00464 * 343.07839 * 7 2 1 10 10 C 1.46925 * 120.62798 * 331.84676 * 9 7 2 11 11 C 1.53198 * 108.77412 * 233.58541 * 10 9 7 12 12 C 1.53038 * 109.31349 * 305.36402 * 11 10 9 13 13 N 1.46889 * 109.46214 * 181.38475 * 12 11 10 14 14 C 1.46896 * 111.00290 * 155.00130 * 13 12 11 15 15 C 1.50701 * 109.47374 * 180.02562 * 14 13 12 16 16 N 1.29024 * 124.92109 * 89.95579 * 15 14 13 17 17 C 1.31781 * 117.12754 * 179.74878 * 16 15 14 18 18 C 1.33635 * 114.49760 * 0.52343 * 17 16 15 19 19 C 1.50709 * 126.03619 * 179.78420 * 18 17 16 20 20 O 1.44383 * 110.11475 * 296.45756 * 19 18 17 21 21 C 1.44834 * 103.23477 * 201.60216 * 20 19 18 22 22 C 1.54454 * 102.89732 * 36.61102 * 21 20 19 23 23 O 1.43786 * 110.11130 * 179.71659 * 19 18 17 24 24 S 1.70976 * 124.91364 * 269.99910 * 15 14 13 25 25 C 1.53044 * 109.53462 * 61.36519 * 12 11 10 26 26 C 1.46919 * 120.63285 * 151.82329 * 9 7 2 27 27 H 0.96996 * 120.00330 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.59003 * 113.79957 * 10 9 7 29 29 H 1.09002 * 109.70870 * 353.44189 * 10 9 7 30 30 H 1.09000 * 109.49324 * 185.41157 * 11 10 9 31 31 H 1.08998 * 109.49487 * 65.31883 * 11 10 9 32 32 H 1.08997 * 109.46014 * 301.36032 * 12 11 10 33 33 H 1.00905 * 111.00361 * 31.04364 * 13 12 11 34 34 H 1.09001 * 109.47155 * 60.00034 * 14 13 12 35 35 H 1.09002 * 109.47108 * 299.99985 * 14 13 12 36 36 H 1.08000 * 122.75289 * 180.33481 * 17 16 15 37 37 H 1.08999 * 110.09260 * 58.12671 * 19 18 17 38 38 H 1.09006 * 110.72228 * 278.26363 * 21 20 19 39 39 H 1.08992 * 110.72861 * 154.96751 * 21 20 19 40 40 H 1.08999 * 110.31533 * 97.10776 * 22 21 20 41 41 H 1.08995 * 110.32150 * 219.20016 * 22 21 20 42 42 H 1.08997 * 109.50086 * 58.58615 * 25 12 11 43 43 H 1.09004 * 109.49424 * 178.68523 * 25 12 11 44 44 H 1.09008 * 109.58713 * 246.19953 * 26 9 7 45 45 H 1.08998 * 109.58989 * 6.48238 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2222 -0.2728 9 7 1.3701 -2.3625 0.3441 10 6 0.2261 -2.3410 1.2657 11 6 0.4974 -3.3211 2.4114 12 6 0.8120 -4.7023 1.8322 13 7 1.0401 -5.6526 2.9288 14 6 0.7600 -7.0292 2.4995 15 6 1.0040 -7.9733 3.6485 16 7 0.1166 -8.3253 4.5164 17 6 0.4968 -9.1659 5.4574 18 6 1.7790 -9.5355 5.3853 19 6 2.4844 -10.4778 6.3264 20 8 2.5156 -9.9193 7.6574 21 6 3.6179 -10.6186 8.2847 22 6 4.6349 -10.7640 7.1314 23 8 3.8564 -10.6396 5.9277 24 16 2.4973 -8.7322 3.9912 25 6 2.0674 -4.6180 0.9610 26 6 1.8139 -3.6526 -0.2011 27 1 -0.4850 0.8400 0.0004 28 1 -0.6770 -2.6411 0.7343 29 1 0.0966 -1.3361 1.6675 30 1 -0.3832 -3.3865 3.0504 31 1 1.3471 -2.9700 2.9970 32 1 -0.0281 -5.0419 1.2263 33 1 0.4914 -5.4078 3.7395 34 1 1.4148 -7.2909 1.6683 35 1 -0.2797 -7.1060 2.1811 36 1 -0.1722 -9.5243 6.2257 37 1 1.9804 -11.4443 6.3360 38 1 3.2995 -11.5973 8.6439 39 1 4.0382 -10.0262 9.0973 40 1 5.3814 -9.9714 7.1829 41 1 5.1173 -11.7405 7.1729 42 1 2.9024 -4.2548 1.5602 43 1 2.3043 -5.6067 0.5677 44 1 1.0402 -4.0598 -0.8522 45 1 2.7333 -3.5124 -0.7695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323957816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:54 Heat of formation + Delta-G solvation = -34.451946 kcal Electronic energy + Delta-G solvation = -26491.896723 eV Core-core repulsion = 22636.245860 eV Total energy + Delta-G solvation = -3855.650863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.47917 -40.63722 -39.57564 -36.82178 -36.11904 -34.33128 -33.04469 -31.89258 -31.25641 -30.01184 -28.29547 -26.44589 -25.33803 -24.26357 -24.00290 -23.68513 -22.87294 -20.86141 -20.53035 -19.31843 -18.70010 -18.12770 -17.73885 -17.05100 -16.92145 -16.65061 -16.24898 -16.08562 -15.69918 -15.58528 -15.30544 -15.11981 -14.89750 -14.71852 -14.62594 -14.19764 -13.79082 -13.67022 -13.63491 -13.41680 -13.07193 -12.88445 -12.66071 -12.53560 -12.42340 -12.37532 -12.11707 -11.99540 -11.76554 -11.35431 -11.28325 -11.17893 -11.07461 -10.63032 -10.52342 -10.34959 -9.92437 -9.47603 -8.67347 -7.86571 -5.31544 -0.47576 0.25854 0.75823 1.47263 1.50103 1.56647 1.68167 2.49894 2.52483 2.75198 2.95927 3.26317 3.37684 3.58306 3.71088 3.72118 3.88873 3.99781 4.01801 4.11746 4.13264 4.31031 4.37980 4.45016 4.46285 4.51678 4.58015 4.59751 4.72483 4.77436 4.87968 4.95303 4.96602 5.02323 5.08230 5.11187 5.25738 5.42374 5.54399 5.65925 5.72659 5.82035 5.99388 6.28595 6.40739 6.65404 7.16067 7.87688 8.39383 9.19945 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023579 B = 0.002009 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.224731 B =13936.042680 C =14266.146959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.053 4.053 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.262 4.262 8 H 0.066 0.934 9 N -0.611 5.611 10 C 0.180 3.820 11 C -0.127 4.127 12 C 0.109 3.891 13 N -0.679 5.679 14 C 0.135 3.865 15 C 0.038 3.962 16 N -0.496 5.496 17 C 0.059 3.941 18 C -0.266 4.266 19 C 0.314 3.686 20 O -0.390 6.390 21 C 0.011 3.989 22 C 0.014 3.986 23 O -0.401 6.401 24 S 0.218 5.782 25 C -0.105 4.105 26 C 0.140 3.860 27 H 0.250 0.750 28 H -0.003 1.003 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.344 0.656 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.193 0.807 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.054 0.946 43 H 0.078 0.922 44 H 0.015 0.985 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.764 -27.308 15.894 32.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.392 4.392 8 H 0.084 0.916 9 N -0.334 5.334 10 C 0.054 3.946 11 C -0.166 4.166 12 C 0.000 4.000 13 N -0.312 5.312 14 C 0.003 3.997 15 C -0.238 4.238 16 N -0.212 5.212 17 C -0.094 4.094 18 C -0.388 4.388 19 C 0.218 3.782 20 O -0.311 6.311 21 C -0.065 4.065 22 C -0.062 4.062 23 O -0.323 6.323 24 S 0.474 5.526 25 C -0.145 4.145 26 C 0.015 3.985 27 H 0.059 0.941 28 H 0.015 0.985 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.163 0.837 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.210 0.790 37 H 0.139 0.861 38 H 0.121 0.879 39 H 0.143 0.857 40 H 0.105 0.895 41 H 0.132 0.868 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.033 0.967 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.742 -26.813 15.077 31.721 hybrid contribution -1.502 0.879 0.652 1.858 sum 6.240 -25.934 15.729 30.966 Atomic orbital electron populations 1.70172 1.06635 1.25891 1.55495 1.25811 0.96077 1.01529 1.01360 0.85346 0.77575 0.79231 0.78338 1.19987 1.22038 1.20559 1.19479 0.92828 0.86080 1.40815 0.91636 1.44316 1.35912 1.02501 1.50709 1.20527 0.87857 0.97437 0.88788 1.22160 1.00650 0.95330 0.98482 1.21261 0.96772 0.90704 0.91303 1.60592 1.62032 1.00409 1.08132 1.20542 1.01622 0.85842 0.91686 1.27166 0.93832 1.02145 1.00680 1.66382 1.35959 1.14445 1.04432 1.21838 0.93799 0.95728 0.98038 1.26096 0.98726 1.09454 1.04513 1.22299 0.83534 0.93171 0.79246 1.89541 1.52790 1.64324 1.24420 1.24584 0.85079 0.99803 0.97029 1.24255 0.94844 1.04873 0.82223 1.88918 1.18007 1.94217 1.31147 1.84089 1.12511 1.35835 1.20167 1.21855 0.97119 0.99003 0.96495 1.21083 0.97387 0.85882 0.94185 0.94127 0.98471 0.92761 0.91711 0.92746 0.94070 0.83728 0.87490 0.91914 0.79012 0.86083 0.87943 0.85711 0.89465 0.86832 0.92686 0.90386 0.96703 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.21 11.19 21.65 0.24 -55.96 16 2 C -0.05 -2.99 4.92 84.86 0.42 -2.57 16 3 Si 0.97 45.60 29.59 68.60 2.03 47.63 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.26 -14.67 9.58 84.03 0.81 -13.86 16 8 H 0.07 3.58 7.88 -2.91 -0.02 3.55 16 9 N -0.61 -31.24 2.99 -699.10 -2.09 -33.33 16 10 C 0.18 8.86 5.30 86.36 0.46 9.32 16 11 C -0.13 -4.85 5.36 30.67 0.16 -4.69 16 12 C 0.11 3.55 2.46 44.94 0.11 3.66 16 13 N -0.68 -18.96 6.30 -495.46 -3.12 -22.08 16 14 C 0.13 3.24 6.06 85.56 0.52 3.75 16 15 C 0.04 0.93 6.90 88.52 0.61 1.54 16 16 N -0.50 -12.86 10.54 -191.45 -2.02 -14.88 16 17 C 0.06 1.30 11.25 83.66 0.94 2.24 16 18 C -0.27 -5.57 6.18 24.64 0.15 -5.41 16 19 C 0.31 5.17 4.37 71.24 0.31 5.48 16 20 O -0.39 -6.62 11.50 -125.98 -1.45 -8.07 16 21 C 0.01 0.09 7.81 72.48 0.57 0.65 16 22 C 0.01 0.13 8.08 72.48 0.59 0.71 16 23 O -0.40 -6.80 10.75 -125.98 -1.35 -8.16 16 24 S 0.22 4.81 22.61 -56.49 -1.28 3.53 16 25 C -0.11 -3.55 5.59 30.67 0.17 -3.38 16 26 C 0.14 5.85 6.52 86.36 0.56 6.41 16 27 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.05 3.03 6.07 -2.39 -0.01 3.01 16 30 H 0.06 2.23 8.10 -2.39 -0.02 2.21 16 31 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.04 1.36 7.80 -2.39 -0.02 1.34 16 33 H 0.34 9.73 8.32 -89.69 -0.75 8.98 16 34 H 0.11 2.27 7.41 -2.39 -0.02 2.25 16 35 H 0.06 1.51 8.06 -2.39 -0.02 1.49 16 36 H 0.19 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 39 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.08 2.17 7.42 -2.39 -0.02 2.15 16 44 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 45 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 Total: -1.00 -69.87 375.81 -2.41 -72.28 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.26 Total: 15.18 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 6.37 Total: 3.85 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -6.99 Total: -126.26 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -2.80 Total: -16.22 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -1.28 Total: 3.53 kcal Total: -69.87 -2.41 -72.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323957816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.824 kcal (2) G-P(sol) polarization free energy of solvation -69.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds