Wall clock time and date at job start Tue Mar 31 2020 22:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47195 * 269.99383 * 3 2 1 5 5 H 1.48498 * 109.47355 * 29.99940 * 3 2 1 6 6 H 1.48504 * 109.46850 * 149.99954 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00161 * 163.08302 * 7 2 1 9 9 N 1.36942 * 120.00203 * 343.08250 * 7 2 1 10 10 C 1.46922 * 120.62796 * 331.83144 * 9 7 2 11 11 C 1.53192 * 108.89269 * 233.51528 * 10 9 7 12 12 C 1.53065 * 109.29648 * 305.57538 * 11 10 9 13 13 N 1.46902 * 109.45679 * 181.24135 * 12 11 10 14 14 C 1.46901 * 110.99593 * 84.79045 * 13 12 11 15 15 C 1.50702 * 109.46914 * 180.02562 * 14 13 12 16 16 C 1.33638 * 126.03758 * 89.71747 * 15 14 13 17 17 N 1.31787 * 114.49880 * 179.78682 * 16 15 14 18 18 C 1.29034 * 117.12242 * 0.52329 * 17 16 15 19 19 C 1.50699 * 124.91316 * 179.67927 * 18 17 16 20 20 O 1.43752 * 109.63075 * 149.40681 * 19 18 17 21 21 C 1.44790 * 104.81275 * 215.80379 * 20 19 18 22 22 C 1.54917 * 101.72093 * 36.10142 * 21 20 19 23 23 O 1.43365 * 109.63621 * 30.03794 * 19 18 17 24 24 S 1.70978 * 110.16811 * 359.71417 * 18 17 16 25 25 C 1.53049 * 109.65631 * 61.15762 * 12 11 10 26 26 C 1.46924 * 120.63278 * 151.81256 * 9 7 2 27 27 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58836 * 353.37398 * 10 9 7 29 29 H 1.08998 * 109.58900 * 113.65916 * 10 9 7 30 30 H 1.09005 * 109.49756 * 65.39178 * 11 10 9 31 31 H 1.09004 * 109.49788 * 185.48181 * 11 10 9 32 32 H 1.08992 * 109.34132 * 301.13957 * 12 11 10 33 33 H 1.00906 * 110.99831 * 320.84042 * 13 12 11 34 34 H 1.08993 * 109.47187 * 300.00363 * 14 13 12 35 35 H 1.09000 * 109.47027 * 60.00800 * 14 13 12 36 36 H 1.08000 * 122.75138 * 359.97438 * 16 15 14 37 37 H 1.09006 * 109.62466 * 269.64451 * 19 18 17 38 38 H 1.08999 * 110.97719 * 277.99381 * 21 20 19 39 39 H 1.09003 * 111.00623 * 154.21959 * 21 20 19 40 40 H 1.08996 * 110.69609 * 206.03872 * 22 21 20 41 41 H 1.09006 * 110.84493 * 82.90412 * 22 21 20 42 42 H 1.09002 * 109.49883 * 178.75013 * 25 12 11 43 43 H 1.08993 * 109.49715 * 58.64866 * 25 12 11 44 44 H 1.09007 * 109.58325 * 246.20224 * 26 9 7 45 45 H 1.08996 * 109.58499 * 6.48109 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2716 9 7 1.3701 -2.3623 0.3462 10 6 0.2263 -2.3400 1.2679 11 6 0.4941 -3.3198 2.4146 12 6 0.8120 -4.7008 1.8361 13 7 1.0404 -5.6503 2.9335 14 6 -0.2286 -6.2096 3.4182 15 6 0.0450 -7.1765 4.5413 16 6 0.1104 -6.8734 5.8412 17 7 0.3594 -7.8996 6.6298 18 6 0.5180 -9.0495 6.0664 19 6 0.8153 -10.3340 6.7963 20 8 0.2492 -11.4413 6.0754 21 6 -0.1954 -12.3621 7.1006 22 6 -0.6914 -11.3916 8.2015 23 8 0.2335 -10.2896 8.1059 24 16 0.3429 -8.9049 4.3717 25 6 2.0675 -4.6174 0.9647 26 6 1.8138 -3.6528 -0.1981 27 1 -0.4850 0.8400 -0.0004 28 1 0.0994 -1.3343 1.6687 29 1 -0.6774 -2.6381 0.7363 30 1 1.3429 -2.9692 3.0020 31 1 -0.3880 -3.3841 3.0518 32 1 -0.0282 -5.0407 1.2308 33 1 1.5551 -5.2169 3.6854 34 1 -0.8662 -5.4034 3.7805 35 1 -0.7304 -6.7315 2.6033 36 1 -0.0323 -5.8703 6.2152 37 1 1.8940 -10.4667 6.8791 38 1 0.6321 -12.9724 7.4623 39 1 -1.0098 -12.9885 6.7366 40 1 -0.6319 -11.8604 9.1836 41 1 -1.7091 -11.0593 7.9958 42 1 2.3042 -5.6063 0.5721 43 1 2.9024 -4.2537 1.5636 44 1 1.0401 -4.0604 -0.8488 45 1 2.7331 -3.5130 -0.7667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327631860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:52 Heat of formation + Delta-G solvation = -10.944634 kcal Electronic energy + Delta-G solvation = -26460.795642 eV Core-core repulsion = 22606.164132 eV Total energy + Delta-G solvation = -3854.631510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.95946 -39.65165 -38.13064 -35.57520 -35.39097 -32.85344 -31.67850 -30.49304 -29.81293 -28.84060 -27.12275 -25.00870 -24.03064 -23.91261 -23.03332 -22.09762 -21.37381 -19.68369 -19.33184 -18.54259 -17.74784 -17.07430 -16.83899 -16.26419 -15.64573 -15.16979 -15.11928 -14.78677 -14.71284 -14.28593 -13.98063 -13.74585 -13.64331 -13.58984 -13.35418 -13.20890 -13.05873 -12.49203 -12.43585 -12.15914 -12.04081 -11.39766 -11.30424 -11.04437 -10.85602 -10.74201 -10.68585 -10.54069 -10.43731 -10.20149 -10.03889 -9.71592 -9.69589 -9.57522 -9.32232 -9.02637 -8.50168 -8.12837 -6.66338 -5.78994 -3.21071 0.47139 1.11171 1.64411 2.61570 2.79294 3.34949 3.37244 3.44321 3.46979 3.99092 4.10835 4.35114 4.39286 4.49641 4.50044 4.70773 4.82347 4.89130 4.93182 5.04765 5.13613 5.30165 5.30721 5.41915 5.49302 5.54641 5.63821 5.70699 5.91247 5.97593 6.13870 6.31621 6.40748 6.42719 6.53486 6.59259 6.64792 6.82102 7.00348 7.25802 7.31851 7.51431 7.57309 7.64432 7.79803 8.45589 9.21666 9.85400 10.42169 11.29622 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036060 B = 0.001890 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.292707 B =14810.452071 C =15124.004954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.175 3.825 11 C -0.168 4.168 12 C 0.095 3.905 13 N -0.684 5.684 14 C 0.132 3.868 15 C -0.204 4.204 16 C 0.030 3.970 17 N -0.440 5.440 18 C -0.011 4.011 19 C 0.319 3.681 20 O -0.372 6.372 21 C 0.018 3.982 22 C 0.017 3.983 23 O -0.357 6.357 24 S 0.193 5.807 25 C -0.117 4.117 26 C 0.145 3.855 27 H 0.253 0.747 28 H 0.086 0.914 29 H 0.017 0.983 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.341 0.659 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.176 0.824 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.016 0.984 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 -25.212 14.523 29.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.209 4.209 12 C -0.014 4.014 13 N -0.314 5.314 14 C 0.001 3.999 15 C -0.327 4.327 16 C -0.123 4.123 17 N -0.156 5.156 18 C -0.288 4.288 19 C 0.220 3.780 20 O -0.292 6.292 21 C -0.058 4.058 22 C -0.060 4.060 23 O -0.277 6.277 24 S 0.448 5.552 25 C -0.156 4.156 26 C 0.018 3.982 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.159 0.841 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.193 0.807 37 H 0.131 0.869 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.124 0.876 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.034 0.966 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.967 -26.184 13.770 29.649 hybrid contribution -0.200 2.485 0.968 2.674 sum -2.167 -23.699 14.737 27.991 Atomic orbital electron populations 1.70029 1.05268 1.25465 1.54100 1.25048 0.95289 0.98430 1.00993 0.86314 0.79176 0.83671 0.77727 1.21376 1.21599 1.20495 1.19179 0.92543 0.84839 1.41467 0.91724 1.44056 1.35876 1.01647 1.49930 1.20677 0.88695 0.98017 0.87779 1.22871 1.00002 0.97423 1.00591 1.21550 0.98604 0.89720 0.91481 1.60817 1.17993 1.39494 1.13123 1.20290 0.92655 0.94002 0.92950 1.26226 1.09202 0.97971 0.99266 1.21755 1.03200 0.98925 0.88376 1.66113 1.13119 0.97703 1.38647 1.27026 1.08091 0.97779 0.95920 1.22056 0.96491 0.81774 0.77663 1.89259 1.79980 1.29876 1.30071 1.24492 1.00646 0.93185 0.87443 1.24298 0.94588 0.86385 1.00704 1.89054 1.58310 1.50336 1.29955 1.84069 1.63028 1.02787 1.05365 1.21977 0.96628 0.99083 0.97950 1.20930 0.97668 0.86767 0.92867 0.93677 0.89561 0.96516 0.92486 0.93660 0.91160 0.84113 0.92623 0.89792 0.80707 0.86867 0.89863 0.86737 0.87626 0.90423 0.92539 0.92450 0.96567 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 11.20 55.49 0.62 -25.63 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 3 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 8 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 9 N -0.59 -14.78 3.00 -172.32 -0.52 -15.29 16 10 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 11 C -0.17 -3.09 5.34 -26.60 -0.14 -3.23 16 12 C 0.10 1.56 2.42 -67.65 -0.16 1.39 16 13 N -0.68 -9.48 6.24 -107.93 -0.67 -10.15 16 14 C 0.13 1.61 6.01 -4.97 -0.03 1.58 16 15 C -0.20 -2.45 6.11 -35.92 -0.22 -2.67 16 16 C 0.03 0.38 11.25 -19.18 -0.22 0.16 16 17 N -0.44 -5.99 10.36 -11.86 -0.12 -6.12 16 18 C -0.01 -0.13 6.95 -13.45 -0.09 -0.22 16 19 C 0.32 3.15 4.56 36.00 0.16 3.32 16 20 O -0.37 -3.24 10.95 -59.04 -0.65 -3.89 16 21 C 0.02 0.09 7.95 38.17 0.30 0.39 16 22 C 0.02 0.10 8.07 38.17 0.31 0.41 16 23 O -0.36 -3.66 11.07 -59.04 -0.65 -4.32 16 24 S 0.19 2.18 22.75 -107.50 -2.45 -0.27 16 25 C -0.12 -2.04 5.69 -26.61 -0.15 -2.19 16 26 C 0.14 3.03 6.52 -3.71 -0.02 3.00 16 27 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.75 7.42 -51.93 -0.39 0.37 16 32 H 0.07 1.18 7.80 -51.93 -0.40 0.77 16 33 H 0.34 4.69 8.48 -39.29 -0.33 4.36 16 34 H 0.06 0.67 7.41 -51.93 -0.38 0.28 16 35 H 0.08 1.00 8.05 -51.93 -0.42 0.58 16 36 H 0.18 1.89 8.06 -52.49 -0.42 1.46 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -32.00 375.97 -11.17 -43.17 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.85 Total: 1.18 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -0.51 Total: -1.07 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.69 Total: -57.19 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -1.30 Total: -8.21 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.45 Total: -0.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.00 -11.17 -43.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327631860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.226 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds