Wall clock time and date at job start Tue Mar 31 2020 22:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00044 * 2 1 4 4 H 1.48504 * 109.46990 * 239.99875 * 3 2 1 5 5 H 1.48497 * 109.47396 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47319 * 120.00138 * 3 2 1 7 7 C 1.38814 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99504 * 168.58214 * 7 2 1 9 9 N 1.36930 * 120.00002 * 348.85662 * 7 2 1 10 10 C 1.46931 * 120.62892 * 149.78732 * 9 7 2 11 11 C 1.53628 * 108.53984 * 126.37133 * 10 9 7 12 12 C 1.53038 * 109.24365 * 54.85529 * 11 10 9 13 13 C 1.53002 * 109.45712 * 178.49127 * 12 11 10 14 14 O 1.42898 * 109.46996 * 295.88265 * 13 12 11 15 15 N 1.46502 * 109.45942 * 58.53454 * 12 11 10 16 16 C 1.34779 * 119.99902 * 178.05222 * 15 12 11 17 17 O 1.21281 * 119.99668 * 4.90967 * 16 15 12 18 18 C 1.50694 * 119.99638 * 184.91580 * 16 15 12 19 19 C 1.53004 * 109.47071 * 179.97438 * 18 16 15 20 20 C 1.50698 * 109.47399 * 180.02562 * 19 18 16 21 21 N 1.29024 * 124.91937 * 89.69405 * 20 19 18 22 22 C 1.31781 * 117.12290 * 179.81692 * 21 20 19 23 23 C 1.33641 * 114.50005 * 0.46884 * 22 21 20 24 24 S 1.70981 * 124.91312 * 269.99874 * 20 19 18 25 25 C 1.53043 * 109.54089 * 298.51064 * 12 11 10 26 26 C 1.46924 * 120.63137 * 330.07216 * 9 7 2 27 27 H 0.97008 * 119.99417 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.58503 * 246.19918 * 10 9 7 29 29 H 1.08999 * 109.58418 * 6.62933 * 10 9 7 30 30 H 1.09004 * 109.63058 * 294.86127 * 11 10 9 31 31 H 1.08996 * 109.42747 * 174.72652 * 11 10 9 32 32 H 1.08995 * 109.47575 * 55.88446 * 13 12 11 33 33 H 1.09004 * 109.46873 * 175.88633 * 13 12 11 34 34 H 0.96704 * 114.00405 * 180.02562 * 14 13 12 35 35 H 0.96995 * 119.99860 * 358.04422 * 15 12 11 36 36 H 1.09002 * 109.46995 * 299.99151 * 18 16 15 37 37 H 1.09000 * 109.47659 * 59.99447 * 18 16 15 38 38 H 1.08999 * 109.46968 * 300.00043 * 19 18 16 39 39 H 1.09000 * 109.47111 * 59.99381 * 19 18 16 40 40 H 1.08004 * 122.74849 * 180.22871 * 22 21 20 41 41 H 1.08007 * 126.03666 * 179.72083 * 23 22 21 42 42 H 1.08995 * 109.49499 * 301.41641 * 25 12 11 43 43 H 1.08991 * 109.52595 * 181.33364 * 25 12 11 44 44 H 1.08996 * 109.58819 * 353.36567 * 26 9 7 45 45 H 1.08999 * 109.59056 * 113.80101 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0742 -1.2115 -0.1846 9 7 1.3448 -2.3767 0.2302 10 6 1.8119 -3.6321 -0.3737 11 6 1.9927 -4.6731 0.7416 12 6 0.6861 -4.8022 1.5278 13 6 0.8490 -5.8651 2.6162 14 8 1.0728 -7.1388 2.0083 15 7 -0.3934 -5.1961 0.6190 16 6 -1.6346 -5.4090 1.0993 17 8 -1.8791 -5.1888 2.2667 18 6 -2.7184 -5.9207 0.1859 19 6 -4.0200 -6.0749 0.9753 20 6 -5.1037 -6.5872 0.0620 21 7 -5.3659 -7.8332 -0.1466 22 6 -6.3527 -8.1090 -0.9753 23 6 -6.9501 -7.0360 -1.5023 24 16 -6.1591 -5.6015 -0.8534 25 6 0.3431 -3.4583 2.1748 26 6 0.1468 -2.4045 1.0803 27 1 -0.4850 0.8402 -0.0004 28 1 1.0745 -3.9879 -1.0932 29 1 2.7643 -3.4637 -0.8762 30 1 2.7912 -4.3561 1.4124 31 1 2.2485 -5.6364 0.3004 32 1 1.6992 -5.6101 3.2488 33 1 -0.0558 -5.9058 3.2226 34 1 1.1849 -7.8621 2.6403 35 1 -0.2149 -5.3035 -0.3283 36 1 -2.8695 -5.2140 -0.6301 37 1 -2.4240 -6.8881 -0.2211 38 1 -3.8686 -6.7817 1.7911 39 1 -4.3146 -5.1077 1.3826 40 1 -6.6514 -9.1195 -1.2124 41 1 -7.7722 -7.0463 -2.2027 42 1 1.1571 -3.1528 2.8321 43 1 -0.5749 -3.5567 2.7540 44 1 0.0003 -1.4260 1.5374 45 1 -0.7236 -2.6623 0.4768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328559501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:58 Heat of formation + Delta-G solvation = -19.838714 kcal Electronic energy + Delta-G solvation = -27982.768912 eV Core-core repulsion = 24127.751726 eV Total energy + Delta-G solvation = -3855.017186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.22024 -39.74225 -37.62168 -36.09064 -34.10049 -33.81851 -31.92387 -30.62823 -29.79093 -29.48669 -26.74302 -26.16198 -23.89944 -23.42582 -22.26665 -21.06918 -20.23033 -19.96563 -18.67851 -18.14662 -17.18978 -17.02822 -16.49603 -15.71624 -15.45180 -15.15011 -14.89034 -14.70594 -14.25793 -14.04511 -13.97816 -13.55867 -13.33926 -13.25460 -13.02516 -12.83908 -12.50127 -12.21168 -12.13593 -11.81756 -11.65561 -11.39900 -11.25475 -11.13728 -10.86566 -10.72236 -10.39156 -10.27327 -10.03283 -9.91702 -9.79384 -9.71772 -9.57817 -9.55085 -9.14754 -8.93438 -8.51245 -8.46567 -6.62740 -5.77075 -3.24387 0.51964 1.19628 1.59751 2.64494 3.01173 3.37935 3.43665 3.44389 3.49266 4.04091 4.47648 4.49395 4.74775 4.94196 4.96761 5.06893 5.14490 5.28537 5.31604 5.41181 5.46163 5.55032 5.58460 5.68811 5.77443 5.78944 5.93294 5.95328 6.04017 6.11898 6.26077 6.37292 6.52775 6.67443 6.69297 6.80655 6.91849 7.09467 7.42211 7.56355 7.73459 7.78431 7.79995 7.96690 8.47851 8.62111 9.23133 9.84778 10.42123 11.30101 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012068 B = 0.003146 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.681083 B = 8898.341168 C =10590.108015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.134 4.134 12 C 0.194 3.806 13 C 0.063 3.937 14 O -0.569 6.569 15 N -0.699 5.699 16 C 0.523 3.477 17 O -0.547 6.547 18 C -0.135 4.135 19 C -0.027 4.027 20 C 0.057 3.943 21 N -0.477 5.477 22 C 0.038 3.962 23 C -0.269 4.269 24 S 0.129 5.871 25 C -0.153 4.153 26 C 0.181 3.819 27 H 0.254 0.746 28 H 0.015 0.985 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.370 0.630 35 H 0.399 0.601 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.174 0.826 41 H 0.176 0.824 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.142 -15.392 -0.335 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.081 0.919 9 N -0.315 5.315 10 C 0.018 3.982 11 C -0.174 4.174 12 C 0.108 3.892 13 C -0.016 4.016 14 O -0.373 6.373 15 N -0.349 5.349 16 C 0.309 3.691 17 O -0.426 6.426 18 C -0.177 4.177 19 C -0.068 4.068 20 C -0.220 4.220 21 N -0.191 5.191 22 C -0.113 4.113 23 C -0.408 4.408 24 S 0.383 5.617 25 C -0.193 4.193 26 C 0.055 3.945 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.215 0.785 35 H 0.234 0.766 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.191 0.809 41 H 0.193 0.807 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -9.277 -14.035 0.078 16.824 hybrid contribution 0.209 -0.448 -0.319 0.588 sum -9.069 -14.483 -0.241 17.090 Atomic orbital electron populations 1.69969 1.05201 1.25506 1.54172 1.25127 0.95402 0.98333 1.00651 0.86343 0.78811 0.83324 0.78062 1.20949 1.21632 1.21036 1.19142 0.90973 0.84066 1.44115 0.91859 1.44074 1.31015 1.02915 1.53486 1.20981 0.97637 0.87205 0.92350 1.22331 0.95370 0.99863 0.99801 1.20297 0.86991 0.92793 0.89073 1.22761 0.99949 0.83314 0.95571 1.86469 1.95506 1.17693 1.37601 1.45860 1.08515 1.68920 1.11609 1.20203 0.83181 0.77170 0.88512 1.90612 1.81790 1.52242 1.17923 1.21622 0.93357 1.03553 0.99141 1.19994 0.88701 1.02919 0.95235 1.27220 1.01691 0.91303 1.01829 1.66311 1.17062 1.18354 1.17401 1.21819 0.93295 1.00510 0.95713 1.27112 1.08636 0.95039 1.10013 1.84281 1.27599 1.11413 1.38387 1.22615 1.01760 0.94327 1.00562 1.20702 0.87666 0.96983 0.89156 0.93592 0.96746 0.92596 0.91071 0.91839 0.93639 0.91805 0.78478 0.76637 0.88750 0.88518 0.87995 0.88552 0.80886 0.80703 0.92233 0.90733 0.89203 0.96489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.89 10.97 55.49 0.61 -25.28 16 2 C 0.00 0.09 5.05 -17.43 -0.09 0.01 16 3 Si 0.90 21.54 29.57 -169.99 -5.03 16.51 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.82 9.60 -15.06 -0.14 -6.97 16 8 H 0.06 1.67 7.85 -52.49 -0.41 1.26 16 9 N -0.59 -14.40 2.99 -172.05 -0.51 -14.91 16 10 C 0.15 2.89 6.27 -3.48 -0.02 2.87 16 11 C -0.13 -2.28 4.89 -26.39 -0.13 -2.41 16 12 C 0.19 3.29 0.44 -131.77 -0.06 3.24 16 13 C 0.06 0.94 5.62 37.16 0.21 1.15 16 14 O -0.57 -7.74 12.91 -35.23 -0.45 -8.19 16 15 N -0.70 -11.04 3.90 -47.57 -0.19 -11.22 16 16 C 0.52 8.14 7.24 -10.99 -0.08 8.06 16 17 O -0.55 -9.82 12.27 5.56 0.07 -9.76 16 18 C -0.14 -1.65 5.68 -27.88 -0.16 -1.81 16 19 C -0.03 -0.33 5.09 -27.88 -0.14 -0.47 16 20 C 0.06 0.67 6.64 -13.46 -0.09 0.58 16 21 N -0.48 -5.87 10.54 -11.86 -0.13 -5.99 16 22 C 0.04 0.37 11.35 -19.18 -0.22 0.16 16 23 C -0.27 -2.34 11.37 29.12 0.33 -2.01 16 24 S 0.13 1.29 23.18 -107.50 -2.49 -1.20 16 25 C -0.15 -3.03 4.69 -26.61 -0.12 -3.15 16 26 C 0.18 4.29 5.01 -3.71 -0.02 4.27 16 27 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.01 0.29 6.90 -51.93 -0.36 -0.07 16 29 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 0.99 7.76 -51.93 -0.40 0.59 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.04 6.33 -51.93 -0.33 0.71 16 34 H 0.37 3.42 9.12 45.56 0.42 3.83 16 35 H 0.40 5.86 7.21 -40.82 -0.29 5.57 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.10 1.28 8.10 -51.93 -0.42 0.86 16 39 H 0.10 1.16 8.10 -51.93 -0.42 0.74 16 40 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.18 1.03 8.06 -52.48 -0.42 0.60 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.07 1.52 6.18 -51.93 -0.32 1.20 16 44 H 0.09 2.45 6.00 -51.93 -0.31 2.13 16 45 H 0.02 0.43 7.74 -51.93 -0.40 0.02 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -32.22 370.93 -9.03 -41.25 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.76 Total: 9.70 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -0.73 Total: 3.51 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.22 Total: -57.41 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.39 Total: -17.95 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.49 Total: -1.20 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.22 -9.03 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328559501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.407 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds