Wall clock time and date at job start Tue Mar 31 2020 22:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00044 * 2 1 4 4 H 1.48504 * 109.46990 * 239.99875 * 3 2 1 5 5 H 1.48497 * 109.47396 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47319 * 120.00138 * 3 2 1 7 7 C 1.38814 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99504 * 168.58214 * 7 2 1 9 9 N 1.36930 * 120.00002 * 348.85662 * 7 2 1 10 10 C 1.46931 * 120.62892 * 149.78732 * 9 7 2 11 11 C 1.53628 * 108.53984 * 126.37133 * 10 9 7 12 12 C 1.53038 * 109.24365 * 54.85529 * 11 10 9 13 13 C 1.53002 * 109.45712 * 178.49127 * 12 11 10 14 14 O 1.42898 * 109.46996 * 295.88265 * 13 12 11 15 15 N 1.46502 * 109.45942 * 58.53454 * 12 11 10 16 16 C 1.34779 * 119.99902 * 178.05222 * 15 12 11 17 17 O 1.21281 * 119.99668 * 4.90967 * 16 15 12 18 18 C 1.50694 * 119.99638 * 184.91580 * 16 15 12 19 19 C 1.53004 * 109.47071 * 179.97438 * 18 16 15 20 20 C 1.50698 * 109.47399 * 180.02562 * 19 18 16 21 21 N 1.29024 * 124.91937 * 89.69405 * 20 19 18 22 22 C 1.31781 * 117.12290 * 179.81692 * 21 20 19 23 23 C 1.33641 * 114.50005 * 0.46884 * 22 21 20 24 24 S 1.70981 * 124.91312 * 269.99874 * 20 19 18 25 25 C 1.53043 * 109.54089 * 298.51064 * 12 11 10 26 26 C 1.46924 * 120.63137 * 330.07216 * 9 7 2 27 27 H 0.97008 * 119.99417 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.58503 * 246.19918 * 10 9 7 29 29 H 1.08999 * 109.58418 * 6.62933 * 10 9 7 30 30 H 1.09004 * 109.63058 * 294.86127 * 11 10 9 31 31 H 1.08996 * 109.42747 * 174.72652 * 11 10 9 32 32 H 1.08995 * 109.47575 * 55.88446 * 13 12 11 33 33 H 1.09004 * 109.46873 * 175.88633 * 13 12 11 34 34 H 0.96704 * 114.00405 * 180.02562 * 14 13 12 35 35 H 0.96995 * 119.99860 * 358.04422 * 15 12 11 36 36 H 1.09002 * 109.46995 * 299.99151 * 18 16 15 37 37 H 1.09000 * 109.47659 * 59.99447 * 18 16 15 38 38 H 1.08999 * 109.46968 * 300.00043 * 19 18 16 39 39 H 1.09000 * 109.47111 * 59.99381 * 19 18 16 40 40 H 1.08004 * 122.74849 * 180.22871 * 22 21 20 41 41 H 1.08007 * 126.03666 * 179.72083 * 23 22 21 42 42 H 1.08995 * 109.49499 * 301.41641 * 25 12 11 43 43 H 1.08991 * 109.52595 * 181.33364 * 25 12 11 44 44 H 1.08996 * 109.58819 * 353.36567 * 26 9 7 45 45 H 1.08999 * 109.59056 * 113.80101 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0742 -1.2115 -0.1846 9 7 1.3448 -2.3767 0.2302 10 6 1.8119 -3.6321 -0.3737 11 6 1.9927 -4.6731 0.7416 12 6 0.6861 -4.8022 1.5278 13 6 0.8490 -5.8651 2.6162 14 8 1.0728 -7.1388 2.0083 15 7 -0.3934 -5.1961 0.6190 16 6 -1.6346 -5.4090 1.0993 17 8 -1.8791 -5.1888 2.2667 18 6 -2.7184 -5.9207 0.1859 19 6 -4.0200 -6.0749 0.9753 20 6 -5.1037 -6.5872 0.0620 21 7 -5.3659 -7.8332 -0.1466 22 6 -6.3527 -8.1090 -0.9753 23 6 -6.9501 -7.0360 -1.5023 24 16 -6.1591 -5.6015 -0.8534 25 6 0.3431 -3.4583 2.1748 26 6 0.1468 -2.4045 1.0803 27 1 -0.4850 0.8402 -0.0004 28 1 1.0745 -3.9879 -1.0932 29 1 2.7643 -3.4637 -0.8762 30 1 2.7912 -4.3561 1.4124 31 1 2.2485 -5.6364 0.3004 32 1 1.6992 -5.6101 3.2488 33 1 -0.0558 -5.9058 3.2226 34 1 1.1849 -7.8621 2.6403 35 1 -0.2149 -5.3035 -0.3283 36 1 -2.8695 -5.2140 -0.6301 37 1 -2.4240 -6.8881 -0.2211 38 1 -3.8686 -6.7817 1.7911 39 1 -4.3146 -5.1077 1.3826 40 1 -6.6514 -9.1195 -1.2124 41 1 -7.7722 -7.0463 -2.2027 42 1 1.1571 -3.1528 2.8321 43 1 -0.5749 -3.5567 2.7540 44 1 0.0003 -1.4260 1.5374 45 1 -0.7236 -2.6623 0.4768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328559501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:57 Heat of formation + Delta-G solvation = -43.117212 kcal Electronic energy + Delta-G solvation = -27983.778343 eV Core-core repulsion = 24127.751726 eV Total energy + Delta-G solvation = -3856.026617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.51954 -40.59047 -39.02360 -37.41363 -35.61840 -34.87095 -33.59913 -32.15969 -31.43350 -30.45801 -28.36777 -27.10901 -25.62754 -24.37710 -23.90254 -22.59063 -21.54425 -20.81015 -20.15192 -19.00128 -18.83975 -18.17737 -17.87635 -16.90139 -16.66523 -16.45796 -16.32746 -15.79325 -15.71107 -15.29107 -15.15244 -15.01180 -14.85390 -14.51037 -14.45083 -14.03449 -13.80606 -13.48619 -13.33205 -13.17019 -13.07826 -12.92932 -12.57393 -12.45052 -12.38888 -12.23044 -12.14219 -12.01374 -11.81917 -11.41395 -11.29804 -11.00820 -10.62581 -10.51772 -10.40641 -10.33054 -9.86400 -9.81860 -8.60756 -7.83377 -5.33154 -0.26009 0.42435 0.83780 1.47807 1.49803 1.56191 1.77994 1.85752 2.30950 2.52499 3.18687 3.29009 3.35993 3.70730 3.74829 3.90554 4.01116 4.04125 4.13947 4.26916 4.35683 4.41945 4.50925 4.55297 4.57064 4.58804 4.65746 4.77585 4.80384 4.84076 4.99972 5.00906 5.05400 5.18721 5.21819 5.26204 5.34036 5.52023 5.65479 5.71598 5.80931 6.42981 6.71610 6.77949 6.91448 7.18337 7.38549 7.88814 8.40764 9.21229 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012068 B = 0.003146 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.681083 B = 8898.341168 C =10590.108015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.280 1.280 7 C -0.262 4.262 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.142 3.858 11 C -0.118 4.118 12 C 0.194 3.806 13 C 0.076 3.924 14 O -0.573 6.573 15 N -0.699 5.699 16 C 0.518 3.482 17 O -0.573 6.573 18 C -0.124 4.124 19 C -0.021 4.021 20 C 0.038 3.962 21 N -0.498 5.498 22 C 0.020 3.980 23 C -0.251 4.251 24 S 0.130 5.870 25 C -0.139 4.139 26 C 0.195 3.805 27 H 0.248 0.752 28 H 0.023 0.977 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.392 0.608 35 H 0.405 0.595 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.199 0.801 41 H 0.207 0.793 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.049 0.951 45 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.877 -17.084 -1.215 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.795 3.205 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.206 1.206 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.016 3.984 11 C -0.158 4.158 12 C 0.108 3.892 13 C -0.003 4.003 14 O -0.380 6.380 15 N -0.349 5.349 16 C 0.306 3.694 17 O -0.454 6.454 18 C -0.165 4.165 19 C -0.062 4.062 20 C -0.239 4.239 21 N -0.214 5.214 22 C -0.130 4.130 23 C -0.390 4.390 24 S 0.383 5.617 25 C -0.179 4.179 26 C 0.069 3.931 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.240 0.760 35 H 0.241 0.759 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.215 0.785 41 H 0.224 0.776 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -8.986 -15.780 -0.807 18.177 hybrid contribution 0.078 0.013 -0.085 0.116 sum -8.908 -15.767 -0.892 18.131 Atomic orbital electron populations 1.70144 1.06564 1.25637 1.55679 1.25855 0.96130 1.01410 1.01136 0.85355 0.77493 0.79371 0.78266 1.20055 1.22234 1.20567 1.19488 0.91402 0.85271 1.43065 0.91507 1.44277 1.30844 1.03792 1.54243 1.21146 0.97679 0.86109 0.93458 1.22162 0.95193 0.99781 0.98619 1.20179 0.87334 0.91935 0.89791 1.22441 0.99918 0.83596 0.94369 1.86400 1.95410 1.17686 1.38551 1.45857 1.08511 1.68762 1.11801 1.20748 0.83560 0.76506 0.88588 1.90600 1.82194 1.53318 1.19280 1.21557 0.92285 1.04157 0.98500 1.19833 0.88944 1.02271 0.95125 1.27039 1.02424 0.91684 1.02786 1.66303 1.18136 1.18741 1.18179 1.22241 0.93077 1.02048 0.95678 1.27498 1.08484 0.93729 1.09329 1.84284 1.27350 1.11981 1.38038 1.22368 1.01270 0.95184 0.99110 1.20344 0.87121 0.96030 0.89593 0.94292 0.95949 0.92367 0.91231 0.89424 0.92378 0.93118 0.75958 0.75919 0.87951 0.87137 0.89019 0.89315 0.78465 0.77616 0.92547 0.91566 0.93273 0.98490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.10 10.97 21.65 0.24 -54.86 16 2 C -0.05 -2.78 5.05 84.86 0.43 -2.35 16 3 Si 0.97 44.78 29.57 68.60 2.03 46.80 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.26 -14.19 9.60 84.04 0.81 -13.38 16 8 H 0.07 3.50 7.85 -2.91 -0.02 3.48 16 9 N -0.61 -29.76 2.99 -698.25 -2.09 -31.85 16 10 C 0.14 5.49 6.27 86.51 0.54 6.03 16 11 C -0.12 -3.79 4.89 30.82 0.15 -3.63 16 12 C 0.19 6.36 0.44 3.63 0.00 6.36 16 13 C 0.08 2.14 5.62 71.98 0.40 2.54 16 14 O -0.57 -13.96 12.91 -148.98 -1.92 -15.88 16 15 N -0.70 -21.44 3.90 -422.80 -1.65 -23.09 16 16 C 0.52 15.99 7.24 87.65 0.63 16.63 16 17 O -0.57 -20.83 12.27 -3.03 -0.04 -20.87 16 18 C -0.12 -2.96 5.68 29.85 0.17 -2.79 16 19 C -0.02 -0.50 5.09 29.85 0.15 -0.34 16 20 C 0.04 0.86 6.64 88.52 0.59 1.45 16 21 N -0.50 -11.74 10.54 -191.44 -2.02 -13.76 16 22 C 0.02 0.35 11.35 83.66 0.95 1.30 16 23 C -0.25 -3.77 11.37 66.78 0.76 -3.01 16 24 S 0.13 2.47 23.18 -56.49 -1.31 1.16 16 25 C -0.14 -5.59 4.69 30.68 0.14 -5.45 16 26 C 0.19 9.53 5.01 86.37 0.43 9.96 16 27 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 28 H 0.02 0.85 6.90 -2.39 -0.02 0.83 16 29 H 0.06 2.21 7.93 -2.39 -0.02 2.20 16 30 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 31 H 0.09 2.44 7.76 -2.39 -0.02 2.42 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.60 6.33 -2.38 -0.02 1.58 16 34 H 0.39 6.02 9.12 -74.05 -0.68 5.34 16 35 H 0.41 11.33 7.21 -92.71 -0.67 10.67 16 36 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.09 2.36 8.10 -2.39 -0.02 2.34 16 39 H 0.09 2.23 8.10 -2.39 -0.02 2.21 16 40 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 41 H 0.21 1.67 8.06 -2.91 -0.02 1.65 16 42 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.07 2.77 6.18 -2.39 -0.01 2.75 16 44 H 0.05 2.80 6.00 -2.39 -0.01 2.78 16 45 H 0.00 -0.16 7.74 -2.39 -0.02 -0.17 16 Total: -1.00 -70.24 370.93 -0.91 -71.15 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: -0.32 Total: 27.88 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 6.16 Total: 13.32 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -5.51 Total: -123.56 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -1.96 Total: -36.75 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.31 Total: 1.16 kcal Total: -70.24 -0.91 -71.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328559501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.030 kcal (2) G-P(sol) polarization free energy of solvation -70.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds