Wall clock time and date at job start Tue Mar 31 2020 22:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99754 * 2 1 4 4 H 1.48504 * 109.46733 * 264.78925 * 3 2 1 5 5 H 1.48496 * 109.47347 * 24.78579 * 3 2 1 6 6 H 1.48494 * 109.47232 * 144.79192 * 3 2 1 7 7 C 1.37880 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99979 * 5.05877 * 7 2 1 9 9 C 1.50701 * 119.99424 * 185.05230 * 7 2 1 10 10 H 1.09000 * 109.52714 * 335.26748 * 9 7 2 11 11 C 1.53049 * 109.49474 * 215.18540 * 9 7 2 12 12 C 1.53042 * 109.53498 * 178.68725 * 11 9 7 13 13 C 1.53184 * 109.31326 * 61.36577 * 12 11 9 14 14 N 1.46923 * 108.77769 * 305.36204 * 13 12 11 15 15 C 1.34775 * 120.63356 * 233.63371 * 14 13 12 16 16 O 1.21285 * 120.00370 * 179.97438 * 15 14 13 17 17 C 1.50707 * 119.99897 * 359.97438 * 15 14 13 18 18 C 1.52998 * 109.47036 * 180.02562 * 17 15 14 19 19 N 1.46505 * 109.47099 * 179.97438 * 18 17 15 20 20 C 1.34557 * 119.50505 * 89.99890 * 19 18 17 21 21 O 1.21246 * 120.01387 * 4.39701 * 20 19 18 22 22 C 1.50798 * 119.96699 * 184.41305 * 20 19 18 23 23 C 1.53044 * 109.18583 * 325.77175 * 22 20 19 24 24 N 1.46410 * 109.51815 * 46.68991 * 23 22 20 25 25 C 1.34191 * 120.88638 * 323.90527 * 24 23 22 26 26 S 1.71201 * 119.14336 * 185.94113 * 25 24 23 27 27 C 1.46924 * 118.73759 * 53.60948 * 14 13 12 28 28 H 0.97000 * 120.00469 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.45934 * 298.70567 * 11 9 7 30 30 H 1.08996 * 109.46130 * 58.66734 * 11 9 7 31 31 H 1.09004 * 109.49435 * 181.31427 * 12 11 9 32 32 H 1.09001 * 109.49712 * 301.41172 * 12 11 9 33 33 H 1.09003 * 109.58497 * 185.57335 * 13 12 11 34 34 H 1.09002 * 109.70462 * 65.22296 * 13 12 11 35 35 H 1.08997 * 109.46697 * 299.99856 * 17 15 14 36 36 H 1.08992 * 109.47077 * 59.99840 * 17 15 14 37 37 H 1.09000 * 109.47659 * 300.00106 * 18 17 15 38 38 H 1.09002 * 109.47342 * 60.00122 * 18 17 15 39 39 H 1.09001 * 109.52066 * 85.68384 * 22 20 19 40 40 H 1.09004 * 109.52188 * 205.85499 * 22 20 19 41 41 H 1.09002 * 109.46013 * 166.70875 * 23 22 20 42 42 H 1.08996 * 109.46181 * 286.68902 * 23 22 20 43 43 H 0.97002 * 119.52865 * 144.14794 * 24 23 22 44 44 H 1.09002 * 109.58515 * 186.60643 * 27 14 13 45 45 H 1.09001 * 109.58655 * 66.18222 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6066 1.9828 -1.3944 5 1 1.3958 2.6820 0.5869 6 1 3.4872 1.4746 0.8072 7 6 2.0045 -1.1941 0.0005 8 1 1.4677 -2.1276 -0.0815 9 6 3.5071 -1.1964 0.1155 10 1 3.9015 -0.2461 -0.2442 11 6 4.0819 -2.3390 -0.7251 12 6 5.6096 -2.3222 -0.6352 13 6 6.0337 -2.5329 0.8216 14 7 5.3689 -1.5246 1.6583 15 6 6.0861 -0.7338 2.4809 16 8 5.5256 0.0952 3.1663 17 6 7.5845 -0.8794 2.5492 18 6 8.1498 0.1287 3.5517 19 7 9.6064 -0.0133 3.6185 20 6 10.3815 0.7107 2.7905 21 8 9.8795 1.5313 2.0525 22 6 11.8747 0.5006 2.7806 23 6 12.3442 0.1606 4.1970 24 7 11.4642 -0.8581 4.7727 25 6 10.1484 -0.8603 4.5093 26 16 9.1368 -1.9753 5.3246 27 6 3.9075 -1.3945 1.5808 28 1 -0.4851 0.8400 -0.0004 29 1 3.7065 -3.2908 -0.3492 30 1 3.7779 -2.2139 -1.7643 31 1 6.0191 -3.1217 -1.2526 32 1 5.9842 -1.3612 -0.9878 33 1 7.1148 -2.4234 0.9069 34 1 5.7406 -3.5304 1.1491 35 1 7.8370 -1.8903 2.8694 36 1 8.0129 -0.6925 1.5646 37 1 7.8972 1.1397 3.2320 38 1 7.7213 -0.0586 4.5363 39 1 12.1226 -0.3205 2.1079 40 1 12.3685 1.4115 2.4420 41 1 13.3649 -0.2200 4.1597 42 1 12.3136 1.0580 4.8149 43 1 11.8372 -1.5383 5.3551 44 1 3.5857 -0.5337 2.1670 45 1 3.4390 -2.2990 1.9686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328775143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:33 Heat of formation + Delta-G solvation = -48.284209 kcal Electronic energy + Delta-G solvation = -27906.162472 eV Core-core repulsion = 24049.911797 eV Total energy + Delta-G solvation = -3856.250675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.19836 -39.68045 -38.58823 -37.11027 -36.26206 -33.39236 -32.47867 -31.94692 -31.50982 -30.31386 -26.79209 -25.62080 -25.14173 -24.78769 -23.24560 -21.82217 -19.78648 -19.63093 -19.41328 -18.66652 -18.43955 -17.17199 -17.08201 -16.70408 -16.00308 -15.70394 -15.48971 -15.35178 -15.02268 -14.58656 -14.31773 -13.89747 -13.82187 -13.60957 -13.34355 -13.18205 -12.88151 -12.58170 -12.47429 -12.33429 -12.15815 -12.12314 -11.75273 -11.25816 -11.18220 -11.02026 -10.76201 -10.68859 -10.51304 -10.13631 -10.00845 -9.67107 -9.58261 -9.23963 -9.03545 -8.53374 -8.38745 -7.98598 -7.95258 -6.07590 -4.08243 0.16160 1.26768 1.79074 1.89697 2.26865 3.05374 3.34693 3.41745 3.44626 3.52198 3.55241 3.56747 4.03416 4.23001 4.46972 4.53097 4.69638 4.73314 4.77509 4.90962 5.13313 5.20524 5.25384 5.30303 5.39646 5.42569 5.58793 5.70077 5.86039 5.89702 6.04550 6.15522 6.19297 6.34112 6.38215 6.46804 6.67244 6.72545 6.84789 6.91781 6.97856 7.31129 7.40780 7.76833 7.95751 8.50727 8.64023 8.97715 9.56072 11.04923 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017722 B = 0.002991 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.561333 B = 9359.453593 C = 9672.341348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.076 3.924 3 Si 0.871 3.129 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.514 4.514 8 H 0.075 0.925 9 C 0.006 3.994 10 H 0.034 0.966 11 C -0.105 4.105 12 C -0.138 4.138 13 C 0.110 3.890 14 N -0.606 5.606 15 C 0.519 3.481 16 O -0.546 6.546 17 C -0.152 4.152 18 C 0.116 3.884 19 N -0.530 5.530 20 C 0.506 3.494 21 O -0.468 6.468 22 C -0.160 4.160 23 C 0.088 3.912 24 N -0.666 5.666 25 C 0.552 3.448 26 S -0.568 6.568 27 C 0.114 3.886 28 H 0.265 0.735 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.132 0.868 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.438 0.562 44 H 0.082 0.918 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.932 -1.933 5.933 32.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.127 4.127 3 Si 0.698 3.302 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.183 1.183 7 C -0.552 4.552 8 H 0.093 0.907 9 C -0.014 4.014 10 H 0.052 0.948 11 C -0.142 4.142 12 C -0.176 4.176 13 C -0.013 4.013 14 N -0.339 5.339 15 C 0.306 3.694 16 O -0.424 6.424 17 C -0.193 4.193 18 C -0.004 4.004 19 N -0.254 5.254 20 C 0.291 3.709 21 O -0.337 6.337 22 C -0.201 4.201 23 C -0.040 4.040 24 N -0.299 5.299 25 C 0.200 3.800 26 S -0.434 6.434 27 C -0.006 4.006 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.150 0.850 41 H 0.134 0.866 42 H 0.107 0.893 43 H 0.280 0.720 44 H 0.101 0.899 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 30.603 -1.389 6.231 31.261 hybrid contribution 1.183 1.132 -0.362 1.676 sum 31.785 -0.258 5.869 32.324 Atomic orbital electron populations 1.69899 1.06346 1.27154 1.49910 1.25069 0.94684 0.99035 0.93914 0.86924 0.80836 0.83684 0.78708 1.20330 1.21481 1.18290 1.20891 0.88681 0.94654 1.50940 0.90661 1.19474 0.96863 0.94714 0.90365 0.94814 1.21578 0.91640 1.00102 1.00926 1.22013 0.99151 1.01409 0.95037 1.21675 0.96409 0.91978 0.91255 1.48437 1.09333 1.35616 1.40509 1.20063 0.88336 0.81114 0.79931 1.90693 1.72467 1.35693 1.43593 1.21917 0.94538 1.02528 1.00311 1.21928 0.72735 1.01651 1.04127 1.45874 1.11132 1.37148 1.31294 1.21263 0.90069 0.79847 0.79719 1.90845 1.75552 1.30271 1.37017 1.22303 0.91239 1.07535 0.99007 1.22032 0.95603 0.93026 0.93301 1.45320 1.04337 1.32009 1.48235 1.22380 0.87033 0.86730 0.83868 1.93879 1.57182 1.35684 1.56692 1.22423 0.75176 1.02093 1.00947 0.92545 0.92680 0.92229 0.91770 0.92233 0.91100 0.91420 0.87220 0.89403 0.87423 0.85782 0.86303 0.84965 0.86646 0.89267 0.71982 0.89924 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.87 22.65 27.00 -169.99 -4.59 18.06 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.26 -6.81 6.81 56.52 0.38 -6.43 16 7 C -0.51 -14.32 8.86 -34.44 -0.31 -14.63 16 8 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 9 C 0.01 0.13 1.92 -91.65 -0.18 -0.05 16 10 H 0.03 0.84 5.28 -51.93 -0.27 0.56 16 11 C -0.10 -2.01 5.15 -26.68 -0.14 -2.15 16 12 C -0.14 -2.09 6.08 -26.61 -0.16 -2.25 16 13 C 0.11 1.60 6.34 -3.72 -0.02 1.58 16 14 N -0.61 -11.38 2.97 -172.77 -0.51 -11.89 16 15 C 0.52 9.72 7.70 -10.98 -0.08 9.64 16 16 O -0.55 -12.31 15.40 5.55 0.09 -12.22 16 17 C -0.15 -2.10 4.29 -27.88 -0.12 -2.22 16 18 C 0.12 1.54 4.05 -4.04 -0.02 1.53 16 19 N -0.53 -5.19 2.54 -117.53 -0.30 -5.49 16 20 C 0.51 4.28 7.48 -11.04 -0.08 4.20 16 21 O -0.47 -5.82 16.60 5.59 0.09 -5.72 16 22 C -0.16 -0.42 6.28 -27.81 -0.17 -0.59 16 23 C 0.09 0.07 7.24 -4.07 -0.03 0.04 16 24 N -0.67 -2.65 5.57 -62.33 -0.35 -3.00 16 25 C 0.55 4.85 7.52 -87.83 -0.66 4.19 16 26 S -0.57 -7.56 27.79 -107.50 -2.99 -10.55 16 27 C 0.11 2.56 5.70 -3.71 -0.02 2.54 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.84 5.93 -51.93 -0.31 0.53 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.11 1.44 7.06 -51.93 -0.37 1.07 16 36 H 0.09 1.11 7.69 -51.93 -0.40 0.71 16 37 H 0.11 1.58 7.28 -51.93 -0.38 1.20 16 38 H 0.12 1.83 6.78 -51.93 -0.35 1.48 16 39 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.13 0.14 8.14 -51.93 -0.42 -0.29 16 41 H 0.12 -0.29 8.14 -51.93 -0.42 -0.71 16 42 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 43 H 0.44 1.09 8.75 -40.82 -0.36 0.73 16 44 H 0.08 2.09 7.00 -51.93 -0.36 1.73 16 45 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -38.21 370.51 -10.89 -49.10 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.60 Total: -0.92 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -2.09 Total: 3.93 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.39 Total: -47.27 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.18 Total: -17.95 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.59 Total: 18.06 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -2.99 Total: -10.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.21 -10.89 -49.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328775143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.818 kcal (2) G-P(sol) polarization free energy of solvation -38.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds