Wall clock time and date at job start Tue Mar 31 2020 22:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99754 * 2 1 4 4 H 1.48504 * 109.46733 * 264.78925 * 3 2 1 5 5 H 1.48496 * 109.47347 * 24.78579 * 3 2 1 6 6 H 1.48494 * 109.47232 * 144.79192 * 3 2 1 7 7 C 1.37880 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99979 * 5.05877 * 7 2 1 9 9 C 1.50701 * 119.99424 * 185.05230 * 7 2 1 10 10 H 1.09000 * 109.52714 * 335.26748 * 9 7 2 11 11 C 1.53049 * 109.49474 * 215.18540 * 9 7 2 12 12 C 1.53042 * 109.53498 * 178.68725 * 11 9 7 13 13 C 1.53184 * 109.31326 * 61.36577 * 12 11 9 14 14 N 1.46923 * 108.77769 * 305.36204 * 13 12 11 15 15 C 1.34775 * 120.63356 * 233.63371 * 14 13 12 16 16 O 1.21285 * 120.00370 * 179.97438 * 15 14 13 17 17 C 1.50707 * 119.99897 * 359.97438 * 15 14 13 18 18 C 1.52998 * 109.47036 * 180.02562 * 17 15 14 19 19 N 1.46505 * 109.47099 * 179.97438 * 18 17 15 20 20 C 1.34557 * 119.50505 * 89.99890 * 19 18 17 21 21 O 1.21246 * 120.01387 * 4.39701 * 20 19 18 22 22 C 1.50798 * 119.96699 * 184.41305 * 20 19 18 23 23 C 1.53044 * 109.18583 * 325.77175 * 22 20 19 24 24 N 1.46410 * 109.51815 * 46.68991 * 23 22 20 25 25 C 1.34191 * 120.88638 * 323.90527 * 24 23 22 26 26 S 1.71201 * 119.14336 * 185.94113 * 25 24 23 27 27 C 1.46924 * 118.73759 * 53.60948 * 14 13 12 28 28 H 0.97000 * 120.00469 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.45934 * 298.70567 * 11 9 7 30 30 H 1.08996 * 109.46130 * 58.66734 * 11 9 7 31 31 H 1.09004 * 109.49435 * 181.31427 * 12 11 9 32 32 H 1.09001 * 109.49712 * 301.41172 * 12 11 9 33 33 H 1.09003 * 109.58497 * 185.57335 * 13 12 11 34 34 H 1.09002 * 109.70462 * 65.22296 * 13 12 11 35 35 H 1.08997 * 109.46697 * 299.99856 * 17 15 14 36 36 H 1.08992 * 109.47077 * 59.99840 * 17 15 14 37 37 H 1.09000 * 109.47659 * 300.00106 * 18 17 15 38 38 H 1.09002 * 109.47342 * 60.00122 * 18 17 15 39 39 H 1.09001 * 109.52066 * 85.68384 * 22 20 19 40 40 H 1.09004 * 109.52188 * 205.85499 * 22 20 19 41 41 H 1.09002 * 109.46013 * 166.70875 * 23 22 20 42 42 H 1.08996 * 109.46181 * 286.68902 * 23 22 20 43 43 H 0.97002 * 119.52865 * 144.14794 * 24 23 22 44 44 H 1.09002 * 109.58515 * 186.60643 * 27 14 13 45 45 H 1.09001 * 109.58655 * 66.18222 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6066 1.9828 -1.3944 5 1 1.3958 2.6820 0.5869 6 1 3.4872 1.4746 0.8072 7 6 2.0045 -1.1941 0.0005 8 1 1.4677 -2.1276 -0.0815 9 6 3.5071 -1.1964 0.1155 10 1 3.9015 -0.2461 -0.2442 11 6 4.0819 -2.3390 -0.7251 12 6 5.6096 -2.3222 -0.6352 13 6 6.0337 -2.5329 0.8216 14 7 5.3689 -1.5246 1.6583 15 6 6.0861 -0.7338 2.4809 16 8 5.5256 0.0952 3.1663 17 6 7.5845 -0.8794 2.5492 18 6 8.1498 0.1287 3.5517 19 7 9.6064 -0.0133 3.6185 20 6 10.3815 0.7107 2.7905 21 8 9.8795 1.5313 2.0525 22 6 11.8747 0.5006 2.7806 23 6 12.3442 0.1606 4.1970 24 7 11.4642 -0.8581 4.7727 25 6 10.1484 -0.8603 4.5093 26 16 9.1368 -1.9753 5.3246 27 6 3.9075 -1.3945 1.5808 28 1 -0.4851 0.8400 -0.0004 29 1 3.7065 -3.2908 -0.3492 30 1 3.7779 -2.2139 -1.7643 31 1 6.0191 -3.1217 -1.2526 32 1 5.9842 -1.3612 -0.9878 33 1 7.1148 -2.4234 0.9069 34 1 5.7406 -3.5304 1.1491 35 1 7.8370 -1.8903 2.8694 36 1 8.0129 -0.6925 1.5646 37 1 7.8972 1.1397 3.2320 38 1 7.7213 -0.0586 4.5363 39 1 12.1226 -0.3205 2.1079 40 1 12.3685 1.4115 2.4420 41 1 13.3649 -0.2200 4.1597 42 1 12.3136 1.0580 4.8149 43 1 11.8372 -1.5383 5.3551 44 1 3.5857 -0.5337 2.1670 45 1 3.4390 -2.2990 1.9686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328775143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:33 Heat of formation + Delta-G solvation = -76.113925 kcal Electronic energy + Delta-G solvation = -27907.369259 eV Core-core repulsion = 24049.911797 eV Total energy + Delta-G solvation = -3857.457462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.89711 -41.16827 -39.26691 -38.59868 -37.07587 -35.31168 -33.71218 -32.89992 -32.70289 -31.90994 -27.79937 -26.94216 -26.43455 -25.68376 -24.35248 -23.37206 -21.35575 -20.32701 -20.05571 -19.97517 -19.26621 -18.98546 -18.24038 -17.73509 -17.02837 -16.78258 -16.66838 -16.35665 -16.13234 -15.83723 -15.37668 -15.19474 -15.06882 -14.82667 -14.57086 -14.40652 -14.19239 -13.87923 -13.71628 -13.58746 -13.36121 -13.04446 -12.89195 -12.73738 -12.68676 -12.39510 -12.32119 -12.02589 -11.77334 -11.64925 -11.44499 -11.33064 -11.09836 -10.85827 -10.74040 -10.66993 -9.57835 -9.26039 -8.95967 -8.36944 -6.38895 -0.52180 0.50702 1.07669 1.13920 1.22742 1.30045 1.40777 1.58344 1.79677 2.09850 2.27076 3.01432 3.01463 3.39771 3.46917 3.65094 3.73035 3.96125 3.98628 4.11448 4.14955 4.17819 4.24768 4.29669 4.47190 4.52741 4.58649 4.62821 4.69344 4.69923 4.76070 4.77020 4.94901 5.00014 5.01643 5.10444 5.23035 5.40399 5.56315 5.63034 5.65030 5.72121 5.79380 6.26774 6.27680 6.48558 6.69726 7.14509 7.27670 8.79528 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017722 B = 0.002991 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.561333 B = 9359.453593 C = 9672.341348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.259 1.259 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.510 4.510 8 H 0.044 0.956 9 C 0.005 3.995 10 H 0.022 0.978 11 C -0.102 4.102 12 C -0.128 4.128 13 C 0.104 3.896 14 N -0.610 5.610 15 C 0.509 3.491 16 O -0.594 6.594 17 C -0.131 4.131 18 C 0.124 3.876 19 N -0.531 5.531 20 C 0.502 3.498 21 O -0.513 6.513 22 C -0.149 4.149 23 C 0.084 3.916 24 N -0.631 5.631 25 C 0.583 3.417 26 S -0.680 6.680 27 C 0.125 3.875 28 H 0.266 0.734 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.144 0.856 40 H 0.157 0.843 41 H 0.169 0.831 42 H 0.103 0.897 43 H 0.449 0.551 44 H 0.043 0.957 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.926 -2.216 4.872 38.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.176 4.176 3 Si 0.757 3.243 4 H -0.184 1.184 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.549 4.549 8 H 0.063 0.937 9 C -0.015 4.015 10 H 0.040 0.960 11 C -0.140 4.140 12 C -0.166 4.166 13 C -0.017 4.017 14 N -0.341 5.341 15 C 0.298 3.702 16 O -0.475 6.475 17 C -0.172 4.172 18 C 0.002 3.998 19 N -0.255 5.255 20 C 0.290 3.710 21 O -0.384 6.384 22 C -0.189 4.189 23 C -0.041 4.041 24 N -0.261 5.261 25 C 0.224 3.776 26 S -0.548 6.548 27 C 0.002 3.998 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.126 0.874 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.141 0.859 36 H 0.127 0.873 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.162 0.838 40 H 0.175 0.825 41 H 0.186 0.814 42 H 0.121 0.879 43 H 0.293 0.707 44 H 0.062 0.938 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 36.720 -1.700 5.154 37.119 hybrid contribution -0.550 1.243 -0.037 1.360 sum 36.171 -0.457 5.117 36.534 Atomic orbital electron populations 1.70016 1.07789 1.27966 1.52309 1.25781 0.95298 1.02230 0.94261 0.85982 0.78971 0.80148 0.79232 1.18423 1.21470 1.19441 1.21214 0.91262 0.93213 1.49185 0.93724 1.19437 0.94031 0.96177 0.91825 0.95969 1.21481 0.95011 0.98001 0.99529 1.21964 0.95490 1.03070 0.96088 1.22049 0.98264 0.91373 0.90059 1.48467 1.07755 1.36623 1.41288 1.20936 0.90356 0.80014 0.78855 1.90668 1.73785 1.37695 1.45398 1.21790 0.90442 1.03366 1.01566 1.21495 0.75294 1.00304 1.02735 1.45776 1.09897 1.37770 1.32099 1.22527 0.92241 0.78253 0.77956 1.90839 1.76747 1.32121 1.38714 1.22500 0.85941 1.09753 1.00702 1.22541 0.96790 0.92687 0.92086 1.45501 1.02589 1.31919 1.46053 1.21735 0.88024 0.85062 0.82755 1.94143 1.60161 1.40099 1.60362 1.21864 0.78236 1.00274 0.99405 0.92442 0.92447 0.92611 0.87433 0.92418 0.87307 0.89852 0.85856 0.87295 0.89383 0.87926 0.83841 0.82511 0.81357 0.87899 0.70650 0.93802 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.40 13.96 21.45 0.30 -60.10 16 2 C 0.02 1.37 5.47 84.66 0.46 1.83 16 3 Si 0.93 48.57 27.00 68.60 1.85 50.42 16 4 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 6 H -0.27 -14.43 6.81 99.48 0.68 -13.75 16 7 C -0.51 -29.58 8.86 25.60 0.23 -29.35 16 8 H 0.04 2.80 8.06 -2.91 -0.02 2.78 16 9 C 0.01 0.24 1.92 -11.46 -0.02 0.22 16 10 H 0.02 1.11 5.28 -2.39 -0.01 1.09 16 11 C -0.10 -3.82 5.15 30.62 0.16 -3.66 16 12 C -0.13 -3.45 6.08 30.67 0.19 -3.26 16 13 C 0.10 2.71 6.34 86.36 0.55 3.26 16 14 N -0.61 -22.66 2.97 -818.91 -2.43 -25.09 16 15 C 0.51 19.33 7.70 87.66 0.67 20.00 16 16 O -0.59 -28.18 15.40 -3.04 -0.05 -28.22 16 17 C -0.13 -3.49 4.29 29.85 0.13 -3.36 16 18 C 0.12 3.33 4.05 86.38 0.35 3.68 16 19 N -0.53 -9.44 2.54 -644.28 -1.64 -11.08 16 20 C 0.50 6.96 7.48 87.72 0.66 7.62 16 21 O -0.51 -11.85 16.60 -2.92 -0.05 -11.89 16 22 C -0.15 0.07 6.28 29.89 0.19 0.26 16 23 C 0.08 -0.41 7.24 86.41 0.63 0.22 16 24 N -0.63 -2.27 5.57 -351.13 -1.96 -4.22 16 25 C 0.58 8.98 7.52 179.37 1.35 10.32 16 26 S -0.68 -18.29 27.79 -56.49 -1.57 -19.86 16 27 C 0.13 5.79 5.70 86.36 0.49 6.28 16 28 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.11 2.07 8.14 -2.38 -0.02 2.06 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.11 2.07 5.93 -2.39 -0.01 2.05 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.12 3.03 7.06 -2.39 -0.02 3.01 16 36 H 0.11 2.46 7.69 -2.39 -0.02 2.44 16 37 H 0.09 2.70 7.28 -2.39 -0.02 2.68 16 38 H 0.10 3.23 6.78 -2.39 -0.02 3.21 16 39 H 0.14 -0.60 8.14 -2.39 -0.02 -0.62 16 40 H 0.16 -0.65 8.14 -2.39 -0.02 -0.67 16 41 H 0.17 -2.28 8.14 -2.39 -0.02 -2.30 16 42 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 43 H 0.45 0.31 8.75 -92.71 -0.81 -0.50 16 44 H 0.04 2.35 7.00 -2.39 -0.02 2.33 16 45 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -93.86 370.51 0.66 -93.21 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: 0.18 Total: 2.80 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 6.02 Total: 14.05 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -5.73 Total: -100.51 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -0.10 Total: -40.12 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 1.85 Total: 50.42 kcal Atomic # 16 Polarization: -18.29 SS G_CDS: -1.57 Total: -19.86 kcal Total: -93.86 0.66 -93.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328775143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.092 kcal (2) G-P(sol) polarization free energy of solvation -93.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds