Wall clock time and date at job start Tue Mar 31 2020 23:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.70442 * 124.59467 * 2 1 4 4 C 1.75508 * 92.44564 * 180.02562 * 3 2 1 5 5 C 1.32767 * 110.57696 * 359.73240 * 4 3 2 6 6 C 1.36013 * 124.58974 * 179.97438 * 2 1 3 7 7 C 1.47189 * 123.46082 * 359.97310 * 6 2 1 8 8 O 1.21640 * 120.00254 * 0.02562 * 7 6 2 9 9 N 1.34781 * 120.00291 * 179.97438 * 7 6 2 10 10 C 1.46496 * 120.00209 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47287 * 325.00796 * 10 9 7 12 12 C 1.53001 * 109.46799 * 84.99950 * 10 9 7 13 13 C 1.52992 * 109.47128 * 204.99948 * 10 9 7 14 14 H 1.08998 * 109.46862 * 65.00901 * 13 10 9 15 15 C 1.52997 * 109.47482 * 305.00336 * 13 10 9 16 16 N 1.46906 * 109.47164 * 184.99869 * 13 10 9 17 17 C 1.46897 * 111.00172 * 205.00386 * 16 13 10 18 18 C 1.50697 * 109.46908 * 180.02562 * 17 16 13 19 19 O 1.21287 * 120.00522 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99988 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00145 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99696 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00073 * 179.97438 * 21 20 18 24 24 N 1.31403 * 119.99964 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99837 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47393 * 89.99670 * 25 23 21 27 27 H 1.48499 * 109.47092 * 210.00201 * 25 23 21 28 28 H 1.48505 * 109.47050 * 329.99511 * 25 23 21 29 29 H 1.09000 * 109.46992 * 270.00544 * 1 2 3 30 30 H 1.09002 * 109.47171 * 30.00209 * 1 2 3 31 31 H 1.08998 * 109.47452 * 150.00451 * 1 2 3 32 32 H 1.08002 * 124.71296 * 179.97438 * 4 3 2 33 33 H 1.07995 * 123.46157 * 180.22666 * 5 4 3 34 34 H 0.96999 * 119.99262 * 0.02562 * 9 7 6 35 35 H 1.09001 * 109.46924 * 60.00177 * 12 10 9 36 36 H 1.09000 * 109.47104 * 179.97438 * 12 10 9 37 37 H 1.08993 * 109.47832 * 299.99970 * 12 10 9 38 38 H 1.09002 * 109.47153 * 59.99783 * 15 13 10 39 39 H 1.09001 * 109.46832 * 299.99974 * 15 13 10 40 40 H 1.09004 * 109.47261 * 179.97438 * 15 13 10 41 41 H 1.00896 * 110.99793 * 328.95910 * 16 13 10 42 42 H 1.09005 * 109.47066 * 299.99968 * 17 16 13 43 43 H 1.09001 * 109.47085 * 59.99954 * 17 16 13 44 44 H 0.97005 * 119.99644 * 359.97438 * 20 18 17 45 45 H 0.97005 * 120.00302 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9606 0.4691 -0.0008 5 6 3.6943 -0.8315 0.0048 6 6 2.2791 -1.1197 0.0005 7 6 1.7289 -2.4849 0.0017 8 8 0.5245 -2.6553 0.0018 9 7 2.5596 -3.5463 0.0016 10 6 2.0120 -4.9051 0.0022 11 1 1.0956 -4.9272 0.5919 12 6 1.7041 -5.3314 -1.4346 13 6 3.0342 -5.8666 0.6116 14 1 3.1868 -5.6169 1.6615 15 6 4.3611 -5.7439 -0.1401 16 7 2.5356 -7.2442 0.5036 17 6 3.1287 -8.1014 1.5386 18 6 2.5953 -9.5036 1.3958 19 8 1.7990 -9.7632 0.5186 20 7 3.0023 -10.4690 2.2437 21 6 2.5167 -11.7445 2.1142 22 1 1.8076 -11.9756 1.3331 23 6 2.9367 -12.7399 2.9880 24 7 2.4708 -13.9623 2.8642 25 14 4.1626 -12.3400 4.3396 26 1 3.4319 -11.9204 5.5624 27 1 4.9791 -13.5436 4.6393 28 1 5.0515 -11.2380 3.8914 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5137 32 1 4.9538 0.8935 -0.0014 33 1 4.4575 -1.5956 0.0090 34 1 3.5200 -3.4104 0.0011 35 1 2.6205 -5.3092 -2.0244 36 1 1.2971 -6.3426 -1.4342 37 1 0.9759 -4.6465 -1.8688 38 1 4.7310 -4.7218 -0.0599 39 1 4.2083 -5.9937 -1.1900 40 1 5.0895 -6.4287 0.2944 41 1 1.5279 -7.2686 0.5477 42 1 4.2127 -8.1121 1.4243 43 1 2.8711 -7.7128 2.5238 44 1 3.6389 -10.2613 2.9456 45 1 2.7643 -14.6574 3.4739 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329028706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:14 Heat of formation + Delta-G solvation = -36.688303 kcal Electronic energy + Delta-G solvation = -26441.282721 eV Core-core repulsion = 22585.534882 eV Total energy + Delta-G solvation = -3855.747839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.43761 -38.73095 -37.83741 -36.91297 -34.59541 -33.86159 -32.29541 -31.69312 -31.11858 -29.27370 -27.47521 -26.74155 -24.84925 -24.08318 -23.07780 -21.89673 -19.87086 -19.75600 -19.39617 -18.41493 -17.68711 -17.12052 -16.19679 -16.02794 -15.59851 -15.43506 -15.25356 -14.81417 -14.56822 -14.02749 -13.96423 -13.87908 -13.74057 -13.50641 -13.15008 -12.99919 -12.84804 -12.60327 -12.43981 -12.38387 -12.15532 -12.08850 -11.96450 -11.89142 -11.57063 -11.45586 -11.21731 -10.99115 -10.74840 -10.60136 -9.98254 -9.95518 -9.57591 -9.35470 -9.18151 -8.85379 -8.59779 -8.23693 -8.17047 -6.31155 -3.82573 0.40951 1.06460 1.47198 1.58684 2.97086 3.01958 3.06161 3.10345 3.14589 3.73676 4.08145 4.11525 4.24811 4.44885 4.54161 4.72464 4.74578 4.88494 4.94479 5.09213 5.14341 5.21131 5.29211 5.37097 5.46735 5.49365 5.53027 5.54846 5.63621 5.72337 5.79213 5.83214 5.84376 5.89939 5.91288 5.97678 6.15816 6.35357 6.41058 7.03402 7.28620 7.50721 7.57944 8.01536 8.14413 8.59455 8.94905 9.42221 9.82300 10.81951 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025670 B = 0.001866 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.499634 B =15004.138756 C =15381.568821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.136 4.136 3 S 0.176 5.824 4 C -0.235 4.235 5 C -0.105 4.105 6 C -0.178 4.178 7 C 0.580 3.420 8 O -0.535 6.535 9 N -0.717 5.717 10 C 0.143 3.857 11 H 0.088 0.912 12 C -0.157 4.157 13 C 0.076 3.924 14 H 0.047 0.953 15 C -0.144 4.144 16 N -0.656 5.656 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.169 0.831 33 H 0.147 0.853 34 H 0.398 0.602 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.353 0.647 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.637 32.754 -3.549 33.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.257 4.257 3 S 0.441 5.559 4 C -0.370 4.370 5 C -0.135 4.135 6 C -0.195 4.195 7 C 0.367 3.633 8 O -0.413 6.413 9 N -0.370 5.370 10 C 0.038 3.962 11 H 0.106 0.894 12 C -0.216 4.216 13 C -0.035 4.035 14 H 0.065 0.935 15 C -0.202 4.202 16 N -0.290 5.290 17 C -0.085 4.085 18 C 0.236 3.764 19 O -0.445 6.445 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.186 0.814 33 H 0.165 0.835 34 H 0.235 0.765 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.174 0.826 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.388 33.556 -4.548 34.146 hybrid contribution 1.604 -1.093 2.032 2.810 sum 5.993 32.463 -2.516 33.107 Atomic orbital electron populations 1.20667 0.86621 1.04515 1.03725 1.24579 1.01954 0.96813 1.02338 1.83130 0.95037 1.07441 1.70243 1.25404 1.02384 0.97235 1.11992 1.21205 0.94500 0.96398 1.01350 1.20157 0.92730 0.93739 1.12850 1.17542 0.86155 0.83648 0.76001 1.90747 1.14412 1.86016 1.50174 1.46014 1.09993 1.05615 1.75395 1.21081 0.96746 0.79942 0.98440 0.89378 1.22128 1.01873 1.02633 0.94926 1.21721 0.95079 0.88660 0.97990 0.93460 1.21888 0.96126 1.00070 1.02134 1.60176 1.13362 1.05977 1.49504 1.21771 1.00478 0.93164 0.93086 1.19677 0.86094 0.85903 0.84752 1.90570 1.36560 1.82240 1.35109 1.42206 1.41438 1.09775 1.29606 1.19432 1.24794 0.82542 1.16564 0.86258 1.25043 0.97993 0.95128 0.98045 1.69619 1.43455 1.01091 1.37935 0.86669 0.81469 0.78625 0.82598 1.19676 1.20176 1.19505 0.90111 0.91521 0.87578 0.81365 0.83533 0.76524 0.92170 0.89930 0.92760 0.93329 0.91004 0.92064 0.82605 0.89421 0.93682 0.79723 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 9.60 36.00 0.35 -0.47 16 2 C -0.14 -1.21 6.34 -35.11 -0.22 -1.43 16 3 S 0.18 1.11 22.97 -107.50 -2.47 -1.36 16 4 C -0.24 -1.38 11.12 28.86 0.32 -1.06 16 5 C -0.11 -0.73 9.91 -39.02 -0.39 -1.11 16 6 C -0.18 -1.69 5.98 -104.63 -0.63 -2.32 16 7 C 0.58 6.62 7.76 -12.62 -0.10 6.52 16 8 O -0.53 -7.69 13.72 5.24 0.07 -7.62 16 9 N -0.72 -6.81 4.97 -54.96 -0.27 -7.09 16 10 C 0.14 1.57 2.30 -67.94 -0.16 1.41 16 11 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 12 C -0.16 -1.83 9.02 37.16 0.34 -1.50 16 13 C 0.08 0.84 2.66 -67.71 -0.18 0.66 16 14 H 0.05 0.50 7.80 -51.93 -0.40 0.10 16 15 C -0.14 -1.36 8.93 37.16 0.33 -1.03 16 16 N -0.66 -9.60 5.14 -108.00 -0.55 -10.16 16 17 C 0.05 0.76 5.96 -4.98 -0.03 0.74 16 18 C 0.45 10.08 7.82 -10.98 -0.09 9.99 16 19 O -0.56 -14.96 15.78 5.55 0.09 -14.88 16 20 N -0.59 -13.98 5.09 -10.96 -0.06 -14.03 16 21 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.76 13.96 55.50 0.77 -24.98 16 25 Si 0.88 19.31 27.74 -169.99 -4.71 14.59 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.11 1.12 5.94 -51.93 -0.31 0.81 16 32 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.15 0.68 7.10 -52.49 -0.37 0.31 16 34 H 0.40 2.83 5.12 -40.82 -0.21 2.62 16 35 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 36 H 0.08 1.07 7.17 -51.93 -0.37 0.70 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.33 6.29 -51.93 -0.33 0.00 16 39 H 0.07 0.74 6.56 -51.93 -0.34 0.40 16 40 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 41 H 0.35 5.50 7.62 -39.29 -0.30 5.20 16 42 H 0.09 1.25 7.44 -51.93 -0.39 0.87 16 43 H 0.05 0.64 8.06 -51.93 -0.42 0.22 16 44 H 0.37 7.67 5.76 -40.82 -0.24 7.43 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 377.77 15.07 5.69 5.69 Total: -1.00 -34.06 377.77 -8.18 -42.24 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -6.04 Total: 14.93 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.70 Total: 2.66 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.11 Total: -56.26 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.16 Total: -22.49 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.59 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.47 Total: -1.36 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.06 -8.18 -42.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329028706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.556 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds